Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNU6-681P-201ENST00000364012 104 ntBASIC2.4□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU1-52P-201ENST00000384190 164 ntBASIC2.4□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 SNORD90-201ENST00000391145 111 ntBASIC2.4□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU6ATAC20P-201ENST00000408436 127 ntBASIC2.4□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU6-531P-201ENST00000516694 104 ntBASIC2.4□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU7-10P-201ENST00000607194 63 ntBASIC2.4□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNA5SP457-201ENST00000363657 124 ntBASIC2.39□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 Y_RNA.239-201ENST00000364444 113 ntBASIC2.39□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU6-1051P-201ENST00000365471 102 ntBASIC2.39□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNA5SP259-201ENST00000365541 109 ntBASIC2.39□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU6-154P-201ENST00000384306 106 ntBASIC2.39□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MIR1302-7-201ENST00000408841 72 ntBASIC2.39□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 HMGN2P19-201ENST00000425149 265 ntBASIC2.39□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RPS29P1-201ENST00000465274 159 ntBASIC2.39□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 VPS35-212ENST00000640313 141 ntTSL 5 BASIC2.39□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNA5SP62-201ENST00000363457 110 ntBASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU6-340P-201ENST00000364005 107 ntBASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 Y_RNA.207-201ENST00000364142 106 ntBASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU4-52P-201ENST00000384209 138 ntBASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU6-205P-201ENST00000390858 107 ntBASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 AC244636.1-201ENST00000421152 228 ntBASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RPS27P16-201ENST00000425758 201 ntBASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 snoU13.17-201ENST00000458802 104 ntBASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RPL30P7-201ENST00000479312 323 ntBASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MIR4491-201ENST00000581087 68 ntBASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MIR151B-201ENST00000584249 96 ntBASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MIR3192-201ENST00000584920 77 ntBASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNA5SP363-201ENST00000365072 115 ntBASIC2.37□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 Y_RNA.371-201ENST00000365591 113 ntBASIC2.37□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU6-291P-201ENST00000384720 107 ntBASIC2.37□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MIR513A1-201ENST00000385138 129 ntBASIC2.37□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 SNORD41-201ENST00000386967 70 ntBASIC2.37□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC2.37□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MIR4658-201ENST00000584344 65 ntBASIC2.37□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 AC005520.4-201ENST00000604337 90 ntBASIC2.37□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MIR377-201ENST00000362145 69 ntBASIC2.36□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU6-330P-201ENST00000363015 107 ntBASIC2.36□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 SNORD48-201ENST00000364953 64 ntBASIC2.36□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU6-895P-201ENST00000384125 103 ntBASIC2.36□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MIR519A1-201ENST00000385257 85 ntBASIC2.36□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 SUMO2P12-201ENST00000405924 140 ntBASIC2.36□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RN7SL274P-201ENST00000492268 272 ntBASIC2.36□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 SNORA25.16-201ENST00000516741 121 ntBASIC2.36□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MIR548H5-201ENST00000580314 60 ntBASIC2.36□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 AC245884.12-201ENST00000615364 59 ntBASIC2.36□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MIR101-2-201ENST00000362195 79 ntBASIC2.35□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MIR96-201ENST00000362288 78 ntBASIC2.35□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 SNORD93-201ENST00000408813 74 ntBASIC2.35□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU6-922P-201ENST00000516753 99 ntBASIC2.35□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 AC036111.3-201ENST00000526389 112 ntBASIC2.35□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 AL157834.3-201ENST00000615543 103 ntBASIC2.35□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.34□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 SNORA25.3-201ENST00000363205 127 ntBASIC2.34□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 SNORD100-201ENST00000408573 76 ntBASIC2.34□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNA5SP450-201ENST00000411206 102 ntBASIC2.34□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 HMGN2P38-201ENST00000423806 265 ntBASIC2.34□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNA5SP436-201ENST00000516020 115 ntBASIC2.34□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 RNU11-2P-201ENST00000516898 142 ntBASIC2.34□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 MIR3675-201ENST00000583661 73 ntBASIC2.34□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 AC103810.8-201ENST00000607347 118 ntBASIC2.34□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 TRDV1-202ENST00000621643 102 ntBASIC2.34□□□□□ -2.03
SENP3-EIF4A1A0A087X0R7 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 RNU6-1260P-201ENST00000362944 107 ntBASIC2.33□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 SNORA25.4-201ENST00000363666 124 ntBASIC2.33□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 Y_RNA.536-201ENST00000384621 113 ntBASIC2.33□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 MIR520E-201ENST00000384867 87 ntBASIC2.33□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 Y_RNA.588-201ENST00000391254 102 ntBASIC2.33□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 RNU6-630P-201ENST00000391258 106 ntBASIC2.33□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 Y_RNA.606-201ENST00000410579 103 ntBASIC2.33□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 MIR18B-201ENST00000454574 71 ntBASIC2.33□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 RNU7-195P-201ENST00000458793 62 ntBASIC2.33□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 RNU6-250P-201ENST00000516958 103 ntBASIC2.33□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.33□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 MIR8053-201ENST00000613344 75 ntBASIC2.33□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 SNORA7.1-201ENST00000363750 139 ntBASIC2.32□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 RNU6-35P-201ENST00000384530 107 ntBASIC2.32□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 MIR144-201ENST00000384886 86 ntBASIC2.32□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 MIR216A-201ENST00000385063 110 ntBASIC2.32□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 AL161935.2-201ENST00000414627 60 ntBASIC2.32□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 TRAJ51-201ENST00000504127 63 ntBASIC2.32□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 Y_RNA.809-201ENST00000516058 95 ntBASIC2.32□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 MIR4529-201ENST00000578110 78 ntBASIC2.32□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 RNU6-664P-201ENST00000362381 107 ntBASIC2.31□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 RNU6-403P-201ENST00000363163 104 ntBASIC2.31□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 RNU1-42P-201ENST00000364033 160 ntBASIC2.31□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 RNU1-36P-201ENST00000365130 165 ntBASIC2.31□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 RNU6-499P-201ENST00000365615 107 ntBASIC2.31□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 SNORD101-201ENST00000384027 73 ntBASIC2.31□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 GHRLOS.1-201ENST00000610995 70 ntBASIC2.31□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 MIR6788-201ENST00000618842 66 ntBASIC2.31□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 Y_RNA.56-201ENST00000362798 112 ntBASIC2.3□□□□□ -2.04
SENP3-EIF4A1A0A087X0R7 Y_RNA.115-201ENST00000363272 98 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 167.4 ms