Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RNU6-495P-201ENST00000362995 107 ntBASIC2.67□□□□□ -1.98
VPS9D1Q9Y2B5 RNA5SP264-201ENST00000363115 107 ntBASIC2.67□□□□□ -1.98
VPS9D1Q9Y2B5 MIR4513-201ENST00000581077 86 ntBASIC2.67□□□□□ -1.98
VPS9D1Q9Y2B5 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.67□□□□□ -1.98
VPS9D1Q9Y2B5 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
VPS9D1Q9Y2B5 ZNF658B-202ENST00000615961 3375 ntBASIC2.66□□□□□ -1.98
VPS9D1Q9Y2B5 RNA5SP215-201ENST00000363440 122 ntBASIC2.66□□□□□ -1.98
VPS9D1Q9Y2B5 MIR203A-201ENST00000384836 110 ntBASIC2.66□□□□□ -1.98
VPS9D1Q9Y2B5 RNA5SP270-201ENST00000411361 118 ntBASIC2.66□□□□□ -1.98
VPS9D1Q9Y2B5 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS9D1Q9Y2B5 RNA5SP356-201ENST00000515972 94 ntBASIC2.66□□□□□ -1.98
VPS9D1Q9Y2B5 RNU6-250P-201ENST00000516958 103 ntBASIC2.66□□□□□ -1.98
VPS9D1Q9Y2B5 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS9D1Q9Y2B5 MIR4635-201ENST00000583759 79 ntBASIC2.66□□□□□ -1.98
VPS9D1Q9Y2B5 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.66□□□□□ -1.98
VPS9D1Q9Y2B5 RNA5SP450-201ENST00000411206 102 ntBASIC2.65□□□□□ -1.99
VPS9D1Q9Y2B5 JTBP1-201ENST00000441314 247 ntBASIC2.65□□□□□ -1.99
VPS9D1Q9Y2B5 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS9D1Q9Y2B5 MIR5092-201ENST00000583139 88 ntBASIC2.65□□□□□ -1.99
VPS9D1Q9Y2B5 RNU6-92P-201ENST00000605893 104 ntBASIC2.65□□□□□ -1.99
VPS9D1Q9Y2B5 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
VPS9D1Q9Y2B5 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
VPS9D1Q9Y2B5 AL359511.1-201ENST00000402970 211 ntBASIC2.64□□□□□ -1.99
VPS9D1Q9Y2B5 RNU6ATAC6P-201ENST00000408132 126 ntBASIC2.64□□□□□ -1.99
VPS9D1Q9Y2B5 RNU4-88P-201ENST00000411220 86 ntBASIC2.64□□□□□ -1.99
VPS9D1Q9Y2B5 AC108938.1-201ENST00000451204 136 ntBASIC2.64□□□□□ -1.99
VPS9D1Q9Y2B5 NAMPTP3-201ENST00000569273 224 ntBASIC2.64□□□□□ -1.99
VPS9D1Q9Y2B5 RNA5SP245-201ENST00000364239 121 ntBASIC2.63□□□□□ -1.99
VPS9D1Q9Y2B5 MIR216B-201ENST00000390186 82 ntBASIC2.63□□□□□ -1.99
VPS9D1Q9Y2B5 snoU13.21-201ENST00000459368 105 ntBASIC2.63□□□□□ -1.99
VPS9D1Q9Y2B5 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.63□□□□□ -1.99
VPS9D1Q9Y2B5 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
VPS9D1Q9Y2B5 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
VPS9D1Q9Y2B5 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
VPS9D1Q9Y2B5 RNU1-112P-201ENST00000364401 164 ntBASIC2.62□□□□□ -1.99
VPS9D1Q9Y2B5 RNU6-535P-201ENST00000384722 107 ntBASIC2.62□□□□□ -1.99
VPS9D1Q9Y2B5 RNA5SP282-201ENST00000516355 108 ntBASIC2.62□□□□□ -1.99
VPS9D1Q9Y2B5 AC079600.2-201ENST00000550076 130 ntBASIC2.62□□□□□ -1.99
VPS9D1Q9Y2B5 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
VPS9D1Q9Y2B5 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
VPS9D1Q9Y2B5 MIR449A-201ENST00000362113 91 ntBASIC2.61□□□□□ -1.99
VPS9D1Q9Y2B5 MIR125B2-201ENST00000385128 89 ntBASIC2.61□□□□□ -1.99
VPS9D1Q9Y2B5 SUMO2P12-201ENST00000405924 140 ntBASIC2.61□□□□□ -1.99
VPS9D1Q9Y2B5 SNORD83.1-201ENST00000411362 77 ntBASIC2.61□□□□□ -1.99
VPS9D1Q9Y2B5 MIR4319-201ENST00000577285 85 ntBASIC2.61□□□□□ -1.99
VPS9D1Q9Y2B5 MIR4658-201ENST00000584344 65 ntBASIC2.61□□□□□ -1.99
VPS9D1Q9Y2B5 MIR3657-201ENST00000584818 117 ntBASIC2.61□□□□□ -1.99
VPS9D1Q9Y2B5 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS9D1Q9Y2B5 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS9D1Q9Y2B5 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
VPS9D1Q9Y2B5 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
VPS9D1Q9Y2B5 RNU6-859P-201ENST00000362728 107 ntBASIC2.6□□□□□ -1.99
VPS9D1Q9Y2B5 RNA5SP126-201ENST00000365092 109 ntBASIC2.6□□□□□ -1.99
VPS9D1Q9Y2B5 RNU6-302P-201ENST00000365249 107 ntBASIC2.6□□□□□ -1.99
VPS9D1Q9Y2B5 AC244505.6-201ENST00000452829 130 ntBASIC2.6□□□□□ -1.99
VPS9D1Q9Y2B5 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.6□□□□□ -1.99
VPS9D1Q9Y2B5 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
VPS9D1Q9Y2B5 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
VPS9D1Q9Y2B5 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS9D1Q9Y2B5 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS9D1Q9Y2B5 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS9D1Q9Y2B5 MIR7-2-201ENST00000384970 110 ntBASIC2.59□□□□□ -1.99
VPS9D1Q9Y2B5 RNU7-13P-201ENST00000516413 62 ntBASIC2.59□□□□□ -1.99
VPS9D1Q9Y2B5 AC008608.1-201ENST00000603910 127 ntBASIC2.59□□□□□ -1.99
VPS9D1Q9Y2B5 AL645939.4-201ENST00000604495 135 ntBASIC2.59□□□□□ -1.99
VPS9D1Q9Y2B5 FO624990.1-201ENST00000636373 85 ntBASIC2.59□□□□□ -1.99
VPS9D1Q9Y2B5 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
VPS9D1Q9Y2B5 RNU6-934P-201ENST00000365154 107 ntBASIC2.58□□□□□ -2
VPS9D1Q9Y2B5 Y_RNA.379-201ENST00000365653 102 ntBASIC2.58□□□□□ -2
VPS9D1Q9Y2B5 SUMO1P4-201ENST00000429430 302 ntBASIC2.58□□□□□ -2
VPS9D1Q9Y2B5 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.58□□□□□ -2
VPS9D1Q9Y2B5 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.58□□□□□ -2
VPS9D1Q9Y2B5 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
VPS9D1Q9Y2B5 RNU6-1312P-201ENST00000362425 108 ntBASIC2.57□□□□□ -2
VPS9D1Q9Y2B5 SNORD60.1-201ENST00000362451 73 ntBASIC2.57□□□□□ -2
VPS9D1Q9Y2B5 U8.2-201ENST00000363156 134 ntBASIC2.57□□□□□ -2
VPS9D1Q9Y2B5 RNU6-260P-201ENST00000384092 107 ntBASIC2.57□□□□□ -2
VPS9D1Q9Y2B5 RNA5SP210-201ENST00000391034 120 ntBASIC2.57□□□□□ -2
VPS9D1Q9Y2B5 RNU6-1089P-201ENST00000516473 104 ntBASIC2.57□□□□□ -2
VPS9D1Q9Y2B5 MIR4446-201ENST00000578505 67 ntBASIC2.57□□□□□ -2
VPS9D1Q9Y2B5 MIR3670-2-201ENST00000582974 65 ntBASIC2.57□□□□□ -2
VPS9D1Q9Y2B5 MIR3670-1-201ENST00000584160 65 ntBASIC2.57□□□□□ -2
VPS9D1Q9Y2B5 MIR3670-3-201ENST00000584855 65 ntBASIC2.57□□□□□ -2
VPS9D1Q9Y2B5 MIR3670-4-201ENST00000612260 65 ntBASIC2.57□□□□□ -2
VPS9D1Q9Y2B5 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.56□□□□□ -2
VPS9D1Q9Y2B5 AC062016.1-201ENST00000355719 319 ntBASIC2.56□□□□□ -2
VPS9D1Q9Y2B5 RNA5SP393-201ENST00000363423 117 ntBASIC2.56□□□□□ -2
VPS9D1Q9Y2B5 MIR4529-201ENST00000578110 78 ntBASIC2.56□□□□□ -2
VPS9D1Q9Y2B5 AL359851.1-201ENST00000569460 4997 ntBASIC2.55□□□□□ -2
VPS9D1Q9Y2B5 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
VPS9D1Q9Y2B5 SNORA75.1-201ENST00000391130 148 ntBASIC2.55□□□□□ -2
VPS9D1Q9Y2B5 AL513328.1-201ENST00000446460 224 ntBASIC2.55□□□□□ -2
VPS9D1Q9Y2B5 SNORD109B-201ENST00000458961 67 ntBASIC2.55□□□□□ -2
VPS9D1Q9Y2B5 SNORD109A-201ENST00000459128 67 ntBASIC2.55□□□□□ -2
VPS9D1Q9Y2B5 SNORA31.11-201ENST00000516528 139 ntBASIC2.55□□□□□ -2
VPS9D1Q9Y2B5 MIR4771-2-201ENST00000577758 74 ntBASIC2.55□□□□□ -2
VPS9D1Q9Y2B5 MIR4771-1-201ENST00000582617 74 ntBASIC2.55□□□□□ -2
VPS9D1Q9Y2B5 AC010297.1-201ENST00000623948 149 ntBASIC2.55□□□□□ -2
VPS9D1Q9Y2B5 RNU6-1126P-201ENST00000384002 107 ntBASIC2.54□□□□□ -2
VPS9D1Q9Y2B5 RN7SL429P-201ENST00000479090 223 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms