Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 Y_RNA.549-201ENST00000384657 102 ntBASIC0.76□□□□□ -2.29
DDX56Q9NY93 AC004941.2-201ENST00000427009 228 ntBASIC0.76□□□□□ -2.29
DDX56Q9NY93 RNU4-54P-201ENST00000516428 129 ntBASIC0.76□□□□□ -2.29
DDX56Q9NY93 RNU6-135P-201ENST00000516769 101 ntBASIC0.76□□□□□ -2.29
DDX56Q9NY93 MIR6767-201ENST00000637302 66 ntBASIC0.76□□□□□ -2.29
DDX56Q9NY93 Y_RNA.155-201ENST00000363632 101 ntBASIC0.75□□□□□ -2.29
DDX56Q9NY93 RNU6-22P-201ENST00000384355 107 ntBASIC0.75□□□□□ -2.29
DDX56Q9NY93 Y_RNA.507-201ENST00000384500 99 ntBASIC0.75□□□□□ -2.29
DDX56Q9NY93 RNU6-816P-201ENST00000390914 107 ntBASIC0.75□□□□□ -2.29
DDX56Q9NY93 RNU6-1268P-201ENST00000391214 107 ntBASIC0.75□□□□□ -2.29
DDX56Q9NY93 RNU6-1239P-201ENST00000391310 107 ntBASIC0.75□□□□□ -2.29
DDX56Q9NY93 RNU6-62P-201ENST00000516526 102 ntBASIC0.75□□□□□ -2.29
DDX56Q9NY93 MIR4679-2-201ENST00000578358 77 ntBASIC0.75□□□□□ -2.29
DDX56Q9NY93 AL670379.3-201ENST00000605040 251 ntBASIC0.75□□□□□ -2.29
DDX56Q9NY93 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.75□□□□□ -2.29
DDX56Q9NY93 AL035470.1-201ENST00000622571 220 ntBASIC0.75□□□□□ -2.29
DDX56Q9NY93 AL512310.12-203ENST00000640543 90 ntBASIC0.75□□□□□ -2.29
DDX56Q9NY93 Y_RNA.56-201ENST00000362798 112 ntBASIC0.74□□□□□ -2.29
DDX56Q9NY93 SNORA63.5-201ENST00000363548 123 ntBASIC0.74□□□□□ -2.29
DDX56Q9NY93 RNU6-945P-201ENST00000383947 107 ntBASIC0.74□□□□□ -2.29
DDX56Q9NY93 RNU6-409P-201ENST00000384114 104 ntBASIC0.74□□□□□ -2.29
DDX56Q9NY93 Y_RNA.563-201ENST00000384707 108 ntBASIC0.74□□□□□ -2.29
DDX56Q9NY93 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.74□□□□□ -2.29
DDX56Q9NY93 BX276092.1-201ENST00000427368 251 ntBASIC0.74□□□□□ -2.29
DDX56Q9NY93 RPL39P34-201ENST00000477141 156 ntBASIC0.74□□□□□ -2.29
DDX56Q9NY93 AL162726.3-218ENST00000636401 95 ntBASIC0.74□□□□□ -2.29
DDX56Q9NY93 Y_RNA.85-201ENST00000363014 111 ntBASIC0.73□□□□□ -2.29
DDX56Q9NY93 Y_RNA.116-201ENST00000363292 103 ntBASIC0.73□□□□□ -2.29
DDX56Q9NY93 RNU4-61P-201ENST00000411243 107 ntBASIC0.73□□□□□ -2.29
DDX56Q9NY93 AL353813.1-201ENST00000440700 253 ntBASIC0.73□□□□□ -2.29
DDX56Q9NY93 RN7SKP12-201ENST00000516275 143 ntBASIC0.73□□□□□ -2.29
DDX56Q9NY93 AL078603.1-201ENST00000603824 313 ntBASIC0.73□□□□□ -2.29
DDX56Q9NY93 MIR520E-201ENST00000384867 87 ntBASIC0.72□□□□□ -2.29
DDX56Q9NY93 MIR518E-201ENST00000385252 88 ntBASIC0.72□□□□□ -2.29
DDX56Q9NY93 RNU6-1168P-201ENST00000390831 104 ntBASIC0.72□□□□□ -2.29
DDX56Q9NY93 RNU6-733P-201ENST00000410759 104 ntBASIC0.72□□□□□ -2.29
DDX56Q9NY93 AL606753.1-201ENST00000427435 87 ntBASIC0.72□□□□□ -2.29
DDX56Q9NY93 AC092634.7-201ENST00000621022 103 ntBASIC0.72□□□□□ -2.29
DDX56Q9NY93 MIR1912-201ENST00000410389 80 ntBASIC0.71□□□□□ -2.3
DDX56Q9NY93 RNU6-789P-201ENST00000517105 102 ntBASIC0.71□□□□□ -2.3
DDX56Q9NY93 MIR548H5-201ENST00000580314 60 ntBASIC0.71□□□□□ -2.3
DDX56Q9NY93 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.71□□□□□ -2.3
DDX56Q9NY93 MIR6835-201ENST00000621552 64 ntBASIC0.71□□□□□ -2.3
DDX56Q9NY93 RNU6-1313P-201ENST00000362622 102 ntBASIC0.7□□□□□ -2.3
DDX56Q9NY93 SNORD18A-201ENST00000363753 72 ntBASIC0.7□□□□□ -2.3
DDX56Q9NY93 Y_RNA.309-201ENST00000365046 111 ntBASIC0.7□□□□□ -2.3
DDX56Q9NY93 RNU6-1154P-201ENST00000391001 104 ntBASIC0.7□□□□□ -2.3
DDX56Q9NY93 AC092628.1-201ENST00000436250 252 ntBASIC0.7□□□□□ -2.3
DDX56Q9NY93 RPS29P1-201ENST00000465274 159 ntBASIC0.7□□□□□ -2.3
DDX56Q9NY93 RNA5SP220-201ENST00000516298 104 ntBASIC0.7□□□□□ -2.3
DDX56Q9NY93 RNU6-1018P-201ENST00000516577 106 ntBASIC0.7□□□□□ -2.3
DDX56Q9NY93 RNA5SP94-201ENST00000516917 108 ntBASIC0.7□□□□□ -2.3
DDX56Q9NY93 MIR635-201ENST00000384830 98 ntBASIC0.69□□□□□ -2.3
DDX56Q9NY93 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.69□□□□□ -2.3
DDX56Q9NY93 SNORD71-201ENST00000411292 86 ntBASIC0.69□□□□□ -2.3
DDX56Q9NY93 MIR6788-201ENST00000618842 66 ntBASIC0.69□□□□□ -2.3
DDX56Q9NY93 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.69□□□□□ -2.3
DDX56Q9NY93 Y_RNA.247-201ENST00000364500 92 ntBASIC0.68□□□□□ -2.3
DDX56Q9NY93 RNA5SP205-201ENST00000364653 136 ntBASIC0.68□□□□□ -2.3
DDX56Q9NY93 SNORD113-1-201ENST00000365321 69 ntBASIC0.68□□□□□ -2.3
DDX56Q9NY93 SNORD38.2-201ENST00000384470 69 ntBASIC0.68□□□□□ -2.3
DDX56Q9NY93 SNORD116-21-201ENST00000384507 92 ntBASIC0.68□□□□□ -2.3
DDX56Q9NY93 Y_RNA.567-201ENST00000384736 106 ntBASIC0.68□□□□□ -2.3
DDX56Q9NY93 TRAJ51-201ENST00000504127 63 ntBASIC0.68□□□□□ -2.3
DDX56Q9NY93 RNU6-1006P-201ENST00000516998 103 ntBASIC0.68□□□□□ -2.3
DDX56Q9NY93 AC068339.1-201ENST00000526965 141 ntBASIC0.68□□□□□ -2.3
DDX56Q9NY93 MTND5P40-201ENST00000559945 246 ntBASIC0.68□□□□□ -2.3
DDX56Q9NY93 MIR151B-201ENST00000584249 96 ntBASIC0.68□□□□□ -2.3
DDX56Q9NY93 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
DDX56Q9NY93 RNU6-1229P-201ENST00000364295 107 ntBASIC0.67□□□□□ -2.3
DDX56Q9NY93 RNA5SP517-201ENST00000364724 117 ntBASIC0.67□□□□□ -2.3
DDX56Q9NY93 RNU6-42P-201ENST00000384165 107 ntBASIC0.67□□□□□ -2.3
DDX56Q9NY93 MIR548I2-201ENST00000408348 149 ntBASIC0.67□□□□□ -2.3
DDX56Q9NY93 RNU6-313P-201ENST00000516317 112 ntBASIC0.67□□□□□ -2.3
DDX56Q9NY93 RNU6-479P-201ENST00000516348 105 ntBASIC0.67□□□□□ -2.3
DDX56Q9NY93 AC138907.6-201ENST00000568401 126 ntBASIC0.67□□□□□ -2.3
DDX56Q9NY93 AC138869.1-201ENST00000568623 124 ntBASIC0.67□□□□□ -2.3
DDX56Q9NY93 RNU7-10P-201ENST00000607194 63 ntBASIC0.67□□□□□ -2.3
DDX56Q9NY93 RNU6-1201P-201ENST00000384227 107 ntBASIC0.66□□□□□ -2.3
DDX56Q9NY93 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.66□□□□□ -2.3
DDX56Q9NY93 MIR548J-201ENST00000408833 112 ntBASIC0.66□□□□□ -2.3
DDX56Q9NY93 SPINT5P-201ENST00000448174 155 ntBASIC0.66□□□□□ -2.3
DDX56Q9NY93 RNU6-406P-201ENST00000516470 107 ntBASIC0.66□□□□□ -2.3
DDX56Q9NY93 CYP3A137P-201ENST00000562436 69 ntBASIC0.66□□□□□ -2.3
DDX56Q9NY93 Y_RNA.35-201ENST00000362601 101 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 Y_RNA.49-201ENST00000362714 112 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 U8.6-201ENST00000364939 135 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 RNU6-571P-201ENST00000384128 107 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 RNU6-880P-201ENST00000384526 107 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 SNORD28-201ENST00000384706 75 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 SNORA40.8-201ENST00000411034 126 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 SNRPGP12-201ENST00000449481 213 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 RNU6-850P-201ENST00000516934 103 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 RNU6-1223P-201ENST00000517124 104 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 AL442128.1-201ENST00000615151 90 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 MIR6734-201ENST00000621166 68 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.65□□□□□ -2.31
DDX56Q9NY93 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
DDX56Q9NY93 SNORA36.1-201ENST00000363424 132 ntBASIC0.64□□□□□ -2.31
DDX56Q9NY93 SNORD38.1-201ENST00000363863 68 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 169 ms