Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 Y_RNA.549-201ENST00000384657 102 ntBASIC0.69□□□□□ -2.3
PCDH9Q9HC56 RNU6-816P-201ENST00000390914 107 ntBASIC0.69□□□□□ -2.3
PCDH9Q9HC56 RNU6-1268P-201ENST00000391214 107 ntBASIC0.69□□□□□ -2.3
PCDH9Q9HC56 RNU6-1239P-201ENST00000391310 107 ntBASIC0.69□□□□□ -2.3
PCDH9Q9HC56 RNU6-765P-201ENST00000516916 99 ntBASIC0.69□□□□□ -2.3
PCDH9Q9HC56 AL670379.3-201ENST00000605040 251 ntBASIC0.69□□□□□ -2.3
PCDH9Q9HC56 Y_RNA.507-201ENST00000384500 99 ntBASIC0.68□□□□□ -2.3
PCDH9Q9HC56 RNU6-535P-201ENST00000384722 107 ntBASIC0.68□□□□□ -2.3
PCDH9Q9HC56 SNORA19-201ENST00000384737 128 ntBASIC0.68□□□□□ -2.3
PCDH9Q9HC56 MIR34C-201ENST00000384831 77 ntBASIC0.68□□□□□ -2.3
PCDH9Q9HC56 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
PCDH9Q9HC56 SNORD100-201ENST00000408573 76 ntBASIC0.68□□□□□ -2.3
PCDH9Q9HC56 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.68□□□□□ -2.3
PCDH9Q9HC56 AC022709.1-201ENST00000615967 87 ntBASIC0.68□□□□□ -2.3
PCDH9Q9HC56 AL035470.1-201ENST00000622571 220 ntBASIC0.68□□□□□ -2.3
PCDH9Q9HC56 AP001362.1-201ENST00000625165 124 ntBASIC0.68□□□□□ -2.3
PCDH9Q9HC56 RNU6-363P-201ENST00000362895 105 ntBASIC0.67□□□□□ -2.3
PCDH9Q9HC56 Y_RNA.353-201ENST00000365440 108 ntBASIC0.67□□□□□ -2.3
PCDH9Q9HC56 RNU6-409P-201ENST00000384114 104 ntBASIC0.67□□□□□ -2.3
PCDH9Q9HC56 Y_RNA.536-201ENST00000384621 113 ntBASIC0.67□□□□□ -2.3
PCDH9Q9HC56 MIR508-201ENST00000384857 115 ntBASIC0.67□□□□□ -2.3
PCDH9Q9HC56 RNU6-1168P-201ENST00000390831 104 ntBASIC0.67□□□□□ -2.3
PCDH9Q9HC56 RNU6-679P-201ENST00000391003 106 ntBASIC0.67□□□□□ -2.3
PCDH9Q9HC56 BX276092.1-201ENST00000427368 251 ntBASIC0.67□□□□□ -2.3
PCDH9Q9HC56 RNU6-313P-201ENST00000516317 112 ntBASIC0.67□□□□□ -2.3
PCDH9Q9HC56 AP003327.1-201ENST00000529684 127 ntBASIC0.67□□□□□ -2.3
PCDH9Q9HC56 AC138907.6-201ENST00000568401 126 ntBASIC0.67□□□□□ -2.3
PCDH9Q9HC56 AL590095.2-201ENST00000604136 117 ntBASIC0.67□□□□□ -2.3
PCDH9Q9HC56 MIR18A-201ENST00000362310 71 ntBASIC0.66□□□□□ -2.3
PCDH9Q9HC56 Y_RNA.360-201ENST00000365512 102 ntBASIC0.66□□□□□ -2.3
PCDH9Q9HC56 RNY1P8-201ENST00000383970 114 ntBASIC0.66□□□□□ -2.3
PCDH9Q9HC56 Y_RNA.466-201ENST00000384294 113 ntBASIC0.66□□□□□ -2.3
PCDH9Q9HC56 RNU6-429P-201ENST00000384582 108 ntBASIC0.66□□□□□ -2.3
PCDH9Q9HC56 RNU6-291P-201ENST00000384720 107 ntBASIC0.66□□□□□ -2.3
PCDH9Q9HC56 MIR644A-201ENST00000385262 94 ntBASIC0.66□□□□□ -2.3
PCDH9Q9HC56 AL162726.3-218ENST00000636401 95 ntBASIC0.66□□□□□ -2.3
PCDH9Q9HC56 SNORD116-21-201ENST00000384507 92 ntBASIC0.65□□□□□ -2.31
PCDH9Q9HC56 RNU6-733P-201ENST00000410759 104 ntBASIC0.65□□□□□ -2.31
PCDH9Q9HC56 SNORA31.14-201ENST00000516728 116 ntBASIC0.65□□□□□ -2.31
PCDH9Q9HC56 MIR5000-201ENST00000577717 103 ntBASIC0.65□□□□□ -2.31
PCDH9Q9HC56 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.65□□□□□ -2.31
PCDH9Q9HC56 Y_RNA.32-201ENST00000362589 110 ntBASIC0.64□□□□□ -2.31
PCDH9Q9HC56 Y_RNA.563-201ENST00000384707 108 ntBASIC0.64□□□□□ -2.31
PCDH9Q9HC56 MIR598-201ENST00000384868 97 ntBASIC0.64□□□□□ -2.31
PCDH9Q9HC56 AL353813.1-201ENST00000440700 253 ntBASIC0.64□□□□□ -2.31
PCDH9Q9HC56 RPL39P34-201ENST00000477141 156 ntBASIC0.64□□□□□ -2.31
PCDH9Q9HC56 RNU6-469P-201ENST00000516253 101 ntBASIC0.64□□□□□ -2.31
PCDH9Q9HC56 MTND5P40-201ENST00000559945 246 ntBASIC0.64□□□□□ -2.31
PCDH9Q9HC56 MIR3678-201ENST00000578455 94 ntBASIC0.64□□□□□ -2.31
PCDH9Q9HC56 uc_338.16-201ENST00000621804 95 ntBASIC0.64□□□□□ -2.31
PCDH9Q9HC56 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.64□□□□□ -2.31
PCDH9Q9HC56 Y_RNA.35-201ENST00000362601 101 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 Y_RNA.85-201ENST00000363014 111 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 RNA5SP245-201ENST00000364239 121 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 RNA5SP205-201ENST00000364653 136 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 Y_RNA.309-201ENST00000365046 111 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 SNORD113-1-201ENST00000365321 69 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 RNU6-110P-201ENST00000384508 104 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 MIR1912-201ENST00000410389 80 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 RNU2-51P-201ENST00000410708 197 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 RNU6-479P-201ENST00000516348 105 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 RNU6-406P-201ENST00000516470 107 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 MIR4679-2-201ENST00000578358 77 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 MIR4714-201ENST00000580728 77 ntBASIC0.63□□□□□ -2.31
PCDH9Q9HC56 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
PCDH9Q9HC56 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.62□□□□□ -2.31
PCDH9Q9HC56 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.62□□□□□ -2.31
PCDH9Q9HC56 RNU6-1064P-201ENST00000410626 104 ntBASIC0.62□□□□□ -2.31
PCDH9Q9HC56 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.62□□□□□ -2.31
PCDH9Q9HC56 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.62□□□□□ -2.31
PCDH9Q9HC56 AC068339.1-201ENST00000526965 141 ntBASIC0.62□□□□□ -2.31
PCDH9Q9HC56 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.62□□□□□ -2.31
PCDH9Q9HC56 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.62□□□□□ -2.31
PCDH9Q9HC56 Y_RNA.56-201ENST00000362798 112 ntBASIC0.61□□□□□ -2.31
PCDH9Q9HC56 Y_RNA.174-201ENST00000363781 105 ntBASIC0.61□□□□□ -2.31
PCDH9Q9HC56 RNU6-1144P-201ENST00000384247 104 ntBASIC0.61□□□□□ -2.31
PCDH9Q9HC56 SNORD38.2-201ENST00000384470 69 ntBASIC0.61□□□□□ -2.31
PCDH9Q9HC56 RNU6-880P-201ENST00000384526 107 ntBASIC0.61□□□□□ -2.31
PCDH9Q9HC56 RNU6-476P-201ENST00000384726 107 ntBASIC0.61□□□□□ -2.31
PCDH9Q9HC56 MIR92A1-201ENST00000385233 78 ntBASIC0.61□□□□□ -2.31
PCDH9Q9HC56 SPINT5P-201ENST00000448174 155 ntBASIC0.61□□□□□ -2.31
PCDH9Q9HC56 MIR6129-201ENST00000616087 109 ntBASIC0.61□□□□□ -2.31
PCDH9Q9HC56 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
PCDH9Q9HC56 RNU6-1313P-201ENST00000362622 102 ntBASIC0.6□□□□□ -2.31
PCDH9Q9HC56 Y_RNA.247-201ENST00000364500 92 ntBASIC0.6□□□□□ -2.31
PCDH9Q9HC56 U8.6-201ENST00000364939 135 ntBASIC0.6□□□□□ -2.31
PCDH9Q9HC56 RNU6-1056P-201ENST00000383996 107 ntBASIC0.6□□□□□ -2.31
PCDH9Q9HC56 MIR635-201ENST00000384830 98 ntBASIC0.6□□□□□ -2.31
PCDH9Q9HC56 RNA5SP480-201ENST00000516840 109 ntBASIC0.6□□□□□ -2.31
PCDH9Q9HC56 MIR548H5-201ENST00000580314 60 ntBASIC0.6□□□□□ -2.31
PCDH9Q9HC56 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.6□□□□□ -2.31
PCDH9Q9HC56 U2.22-201ENST00000636441 106 ntBASIC0.6□□□□□ -2.31
PCDH9Q9HC56 MIR140-201ENST00000385282 100 ntBASIC0.59□□□□□ -2.31
PCDH9Q9HC56 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.59□□□□□ -2.31
PCDH9Q9HC56 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.59□□□□□ -2.31
PCDH9Q9HC56 AC092628.1-201ENST00000436250 252 ntBASIC0.59□□□□□ -2.31
PCDH9Q9HC56 RNU6-1006P-201ENST00000516998 103 ntBASIC0.59□□□□□ -2.31
PCDH9Q9HC56 MIR5009-201ENST00000578736 100 ntBASIC0.59□□□□□ -2.31
PCDH9Q9HC56 Y_RNA.49-201ENST00000362714 112 ntBASIC0.58□□□□□ -2.32
PCDH9Q9HC56 RNU4-45P-201ENST00000365469 141 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 178.9 ms