Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 Y_RNA.818-201ENST00000618813 71 ntBASIC1.26□□□□□ -2.21
PCIF1Q9H4Z3 Y_RNA.10-201ENST00000362371 110 ntBASIC1.25□□□□□ -2.21
PCIF1Q9H4Z3 RNU4-58P-201ENST00000363192 141 ntBASIC1.25□□□□□ -2.21
PCIF1Q9H4Z3 RNU6-364P-201ENST00000384387 107 ntBASIC1.25□□□□□ -2.21
PCIF1Q9H4Z3 MIR200A-201ENST00000384875 90 ntBASIC1.25□□□□□ -2.21
PCIF1Q9H4Z3 MIR150-201ENST00000385048 84 ntBASIC1.25□□□□□ -2.21
PCIF1Q9H4Z3 MIR942-201ENST00000401111 86 ntBASIC1.25□□□□□ -2.21
PCIF1Q9H4Z3 Y_RNA.601-201ENST00000410500 113 ntBASIC1.25□□□□□ -2.21
PCIF1Q9H4Z3 RNU7-102P-201ENST00000458948 62 ntBASIC1.25□□□□□ -2.21
PCIF1Q9H4Z3 SCARNA23-201ENST00000516060 130 ntBASIC1.25□□□□□ -2.21
PCIF1Q9H4Z3 AC008608.1-201ENST00000603910 127 ntBASIC1.25□□□□□ -2.21
PCIF1Q9H4Z3 AC096720.1-201ENST00000604441 183 ntBASIC1.25□□□□□ -2.21
PCIF1Q9H4Z3 RMST_2.1-201ENST00000617263 136 ntBASIC1.25□□□□□ -2.21
PCIF1Q9H4Z3 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.24□□□□□ -2.21
PCIF1Q9H4Z3 SNORD45B-201ENST00000364617 72 ntBASIC1.24□□□□□ -2.21
PCIF1Q9H4Z3 SNORD38.2-201ENST00000384470 69 ntBASIC1.24□□□□□ -2.21
PCIF1Q9H4Z3 MIR520F-201ENST00000384824 87 ntBASIC1.24□□□□□ -2.21
PCIF1Q9H4Z3 SNORD89-201ENST00000390981 114 ntBASIC1.24□□□□□ -2.21
PCIF1Q9H4Z3 MIR548G-201ENST00000408442 89 ntBASIC1.24□□□□□ -2.21
PCIF1Q9H4Z3 FABP5P4-201ENST00000437203 171 ntBASIC1.24□□□□□ -2.21
PCIF1Q9H4Z3 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.24□□□□□ -2.21
PCIF1Q9H4Z3 RNU6-795P-201ENST00000516323 103 ntBASIC1.24□□□□□ -2.21
PCIF1Q9H4Z3 MIR548Z-201ENST00000584743 97 ntBASIC1.24□□□□□ -2.21
PCIF1Q9H4Z3 AC012531.4-201ENST00000616509 177 ntBASIC1.24□□□□□ -2.21
PCIF1Q9H4Z3 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
PCIF1Q9H4Z3 Y_RNA.544-201ENST00000384650 113 ntBASIC1.23□□□□□ -2.21
PCIF1Q9H4Z3 MIR618-201ENST00000385287 98 ntBASIC1.23□□□□□ -2.21
PCIF1Q9H4Z3 RNA5SP89-201ENST00000410300 108 ntBASIC1.23□□□□□ -2.21
PCIF1Q9H4Z3 RNU7-56P-201ENST00000458744 62 ntBASIC1.23□□□□□ -2.21
PCIF1Q9H4Z3 RNU6-168P-201ENST00000516189 101 ntBASIC1.23□□□□□ -2.21
PCIF1Q9H4Z3 RNU6-765P-201ENST00000516916 99 ntBASIC1.23□□□□□ -2.21
PCIF1Q9H4Z3 MIR6504-201ENST00000613520 61 ntBASIC1.23□□□□□ -2.21
PCIF1Q9H4Z3 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.23□□□□□ -2.21
PCIF1Q9H4Z3 RNU6-170P-201ENST00000362832 104 ntBASIC1.22□□□□□ -2.21
PCIF1Q9H4Z3 BX276092.1-201ENST00000427368 251 ntBASIC1.22□□□□□ -2.21
PCIF1Q9H4Z3 SPINT5P-201ENST00000448174 155 ntBASIC1.22□□□□□ -2.21
PCIF1Q9H4Z3 SNRPGP12-201ENST00000449481 213 ntBASIC1.22□□□□□ -2.21
PCIF1Q9H4Z3 RNU6-1194P-201ENST00000516208 104 ntBASIC1.22□□□□□ -2.21
PCIF1Q9H4Z3 RNU6-1110P-201ENST00000516462 101 ntBASIC1.22□□□□□ -2.21
PCIF1Q9H4Z3 MTND5P40-201ENST00000559945 246 ntBASIC1.22□□□□□ -2.21
PCIF1Q9H4Z3 AC013244.2-201ENST00000603396 103 ntBASIC1.22□□□□□ -2.21
PCIF1Q9H4Z3 AP001318.4-201ENST00000616637 121 ntBASIC1.22□□□□□ -2.21
PCIF1Q9H4Z3 Y_RNA.95-201ENST00000363079 95 ntBASIC1.21□□□□□ -2.22
PCIF1Q9H4Z3 Y_RNA.107-201ENST00000363190 121 ntBASIC1.21□□□□□ -2.22
PCIF1Q9H4Z3 RNU6-1163P-201ENST00000364516 107 ntBASIC1.21□□□□□ -2.22
PCIF1Q9H4Z3 RNU6-1335P-201ENST00000365426 107 ntBASIC1.21□□□□□ -2.22
PCIF1Q9H4Z3 MIR1276-201ENST00000408707 83 ntBASIC1.21□□□□□ -2.22
PCIF1Q9H4Z3 AC004941.2-201ENST00000427009 228 ntBASIC1.21□□□□□ -2.22
PCIF1Q9H4Z3 AC109327.2-201ENST00000448339 378 ntBASIC1.21□□□□□ -2.22
PCIF1Q9H4Z3 MIR4777-201ENST00000583710 86 ntBASIC1.21□□□□□ -2.22
PCIF1Q9H4Z3 RNU6-90P-201ENST00000606352 106 ntBASIC1.21□□□□□ -2.22
PCIF1Q9H4Z3 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.21□□□□□ -2.22
PCIF1Q9H4Z3 SNORD114-24-201ENST00000365029 72 ntBASIC1.2□□□□□ -2.22
PCIF1Q9H4Z3 Y_RNA.348-201ENST00000365403 103 ntBASIC1.2□□□□□ -2.22
PCIF1Q9H4Z3 Y_RNA.466-201ENST00000384294 113 ntBASIC1.2□□□□□ -2.22
PCIF1Q9H4Z3 MIR518E-201ENST00000385252 88 ntBASIC1.2□□□□□ -2.22
PCIF1Q9H4Z3 RNU1-119P-201ENST00000391122 165 ntBASIC1.2□□□□□ -2.22
PCIF1Q9H4Z3 MIR1285-1-201ENST00000408593 84 ntBASIC1.2□□□□□ -2.22
PCIF1Q9H4Z3 U7.7-201ENST00000459276 60 ntBASIC1.2□□□□□ -2.22
PCIF1Q9H4Z3 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
PCIF1Q9H4Z3 Y_RNA.173-201ENST00000363776 113 ntBASIC1.19□□□□□ -2.22
PCIF1Q9H4Z3 Y_RNA.467-201ENST00000384297 102 ntBASIC1.19□□□□□ -2.22
PCIF1Q9H4Z3 MIR520H-201ENST00000385126 88 ntBASIC1.19□□□□□ -2.22
PCIF1Q9H4Z3 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.19□□□□□ -2.22
PCIF1Q9H4Z3 MIR4295-201ENST00000585286 85 ntBASIC1.19□□□□□ -2.22
PCIF1Q9H4Z3 AL136317.1-201ENST00000612653 226 ntBASIC1.19□□□□□ -2.22
PCIF1Q9H4Z3 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.18□□□□□ -2.22
PCIF1Q9H4Z3 Y_RNA.93-201ENST00000363066 109 ntBASIC1.18□□□□□ -2.22
PCIF1Q9H4Z3 RNU6-640P-201ENST00000363693 105 ntBASIC1.18□□□□□ -2.22
PCIF1Q9H4Z3 RNU6-571P-201ENST00000384128 107 ntBASIC1.18□□□□□ -2.22
PCIF1Q9H4Z3 RNA5SP255-201ENST00000516370 107 ntBASIC1.18□□□□□ -2.22
PCIF1Q9H4Z3 Y_RNA.677-201ENST00000516401 85 ntBASIC1.18□□□□□ -2.22
PCIF1Q9H4Z3 RNU6-850P-201ENST00000516934 103 ntBASIC1.18□□□□□ -2.22
PCIF1Q9H4Z3 RNU6-158P-201ENST00000517104 100 ntBASIC1.18□□□□□ -2.22
PCIF1Q9H4Z3 MIR101-2-201ENST00000362195 79 ntBASIC1.17□□□□□ -2.22
PCIF1Q9H4Z3 RNU6-1244P-201ENST00000363614 108 ntBASIC1.17□□□□□ -2.22
PCIF1Q9H4Z3 RNU6-905P-201ENST00000384434 107 ntBASIC1.17□□□□□ -2.22
PCIF1Q9H4Z3 Y_RNA.567-201ENST00000384736 106 ntBASIC1.17□□□□□ -2.22
PCIF1Q9H4Z3 SNORD105-201ENST00000386910 85 ntBASIC1.17□□□□□ -2.22
PCIF1Q9H4Z3 SNORD100-201ENST00000408573 76 ntBASIC1.17□□□□□ -2.22
PCIF1Q9H4Z3 Y_RNA.697-201ENST00000516776 113 ntBASIC1.17□□□□□ -2.22
PCIF1Q9H4Z3 AP003327.1-201ENST00000529684 127 ntBASIC1.17□□□□□ -2.22
PCIF1Q9H4Z3 MIR4439-201ENST00000583746 80 ntBASIC1.17□□□□□ -2.22
PCIF1Q9H4Z3 SNORD114-21-201ENST00000606412 72 ntBASIC1.17□□□□□ -2.22
PCIF1Q9H4Z3 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.17□□□□□ -2.22
PCIF1Q9H4Z3 MTATP8P2-201ENST00000435212 202 ntBASIC1.16□□□□□ -2.22
PCIF1Q9H4Z3 AC087343.1-201ENST00000477341 475 ntBASIC1.16□□□□□ -2.22
PCIF1Q9H4Z3 SNORA40.13-201ENST00000516379 120 ntBASIC1.16□□□□□ -2.22
PCIF1Q9H4Z3 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.16□□□□□ -2.22
PCIF1Q9H4Z3 RNU6-291P-201ENST00000384720 107 ntBASIC1.15□□□□□ -2.23
PCIF1Q9H4Z3 RNU6-644P-201ENST00000391155 98 ntBASIC1.15□□□□□ -2.23
PCIF1Q9H4Z3 RNU7-61P-201ENST00000515897 61 ntBASIC1.15□□□□□ -2.23
PCIF1Q9H4Z3 RNU6-448P-201ENST00000517052 107 ntBASIC1.15□□□□□ -2.23
PCIF1Q9H4Z3 RNU6-86P-201ENST00000606534 107 ntBASIC1.15□□□□□ -2.23
PCIF1Q9H4Z3 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.191-201ENST00000363972 113 ntBASIC1.14□□□□□ -2.23
PCIF1Q9H4Z3 Y_RNA.536-201ENST00000384621 113 ntBASIC1.14□□□□□ -2.23
PCIF1Q9H4Z3 RNU6-939P-201ENST00000384634 107 ntBASIC1.14□□□□□ -2.23
PCIF1Q9H4Z3 RNA5SP102-201ENST00000516865 106 ntBASIC1.14□□□□□ -2.23
PCIF1Q9H4Z3 SNORD114-27-201ENST00000363766 70 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 180.9 ms