Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 RNU6-1076P-201ENST00000410397 104 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNU6-355P-201ENST00000410427 104 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNU6-791P-201ENST00000410467 104 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNU6-705P-201ENST00000410601 104 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNU6-1100P-201ENST00000410691 104 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNU6-733P-201ENST00000410759 104 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNU6-860P-201ENST00000410860 104 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNU6-1217P-201ENST00000411276 104 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RNU6-785P-201ENST00000411324 104 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 RPL39P25-201ENST00000449384 154 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 MTND5P34-201ENST00000568888 325 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 AC011195.1-201ENST00000578177 177 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 U6.90-201ENST00000614007 104 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 U6.70-201ENST00000620287 104 ntBASIC0.63□□□□□ -2.31
UPF3AQ9H1J1 MIR330-201ENST00000362196 94 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.115-201ENST00000363272 98 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 RNY1P2-201ENST00000364820 117 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.346-201ENST00000365385 112 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.362-201ENST00000365518 110 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 SNORA72.6-201ENST00000384520 129 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 RNU6-1168P-201ENST00000390831 104 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 RNU4-61P-201ENST00000411243 107 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 AC002350.1-201ENST00000490759 375 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 RNU6-521P-201ENST00000516663 105 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 RNU6-765P-201ENST00000516916 99 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 MIR376B-201ENST00000614515 100 ntBASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.119-201ENST00000363301 96 ntBASIC0.61□□□□□ -2.31
UPF3AQ9H1J1 MIR34C-201ENST00000384831 77 ntBASIC0.61□□□□□ -2.31
UPF3AQ9H1J1 MIR92A1-201ENST00000385233 78 ntBASIC0.61□□□□□ -2.31
UPF3AQ9H1J1 RNU7-48P-201ENST00000458875 63 ntBASIC0.61□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.649-201ENST00000459077 103 ntBASIC0.61□□□□□ -2.31
UPF3AQ9H1J1 MIR3612-201ENST00000579753 87 ntBASIC0.61□□□□□ -2.31
UPF3AQ9H1J1 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.61□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.32-201ENST00000362589 110 ntBASIC0.6□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.328-201ENST00000365208 113 ntBASIC0.6□□□□□ -2.31
UPF3AQ9H1J1 RNU6-291P-201ENST00000384720 107 ntBASIC0.6□□□□□ -2.31
UPF3AQ9H1J1 MIR548A1-201ENST00000385041 97 ntBASIC0.6□□□□□ -2.31
UPF3AQ9H1J1 RNU6-679P-201ENST00000391003 106 ntBASIC0.6□□□□□ -2.31
UPF3AQ9H1J1 AC008267.6-201ENST00000441664 139 ntBASIC0.6□□□□□ -2.31
UPF3AQ9H1J1 RNU6-229P-201ENST00000516614 102 ntBASIC0.6□□□□□ -2.31
UPF3AQ9H1J1 RNU6-448P-201ENST00000517052 107 ntBASIC0.6□□□□□ -2.31
UPF3AQ9H1J1 AC007012.1-201ENST00000567192 175 ntBASIC0.6□□□□□ -2.31
UPF3AQ9H1J1 U6.95-201ENST00000636931 70 ntBASIC0.6□□□□□ -2.31
UPF3AQ9H1J1 MIR18A-201ENST00000362310 71 ntBASIC0.59□□□□□ -2.31
UPF3AQ9H1J1 RNU6-363P-201ENST00000362895 105 ntBASIC0.59□□□□□ -2.31
UPF3AQ9H1J1 Y_RNA.85-201ENST00000363014 111 ntBASIC0.59□□□□□ -2.31
UPF3AQ9H1J1 RNY4P6-201ENST00000363667 96 ntBASIC0.59□□□□□ -2.31
UPF3AQ9H1J1 RNA5SP245-201ENST00000364239 121 ntBASIC0.59□□□□□ -2.31
UPF3AQ9H1J1 RNA5SP205-201ENST00000364653 136 ntBASIC0.59□□□□□ -2.31
UPF3AQ9H1J1 RNU6-1117P-201ENST00000384525 104 ntBASIC0.59□□□□□ -2.31
UPF3AQ9H1J1 RNU6-1006P-201ENST00000516998 103 ntBASIC0.59□□□□□ -2.31
UPF3AQ9H1J1 AP003327.1-201ENST00000529684 127 ntBASIC0.59□□□□□ -2.31
UPF3AQ9H1J1 uc_338.16-201ENST00000621804 95 ntBASIC0.59□□□□□ -2.31
UPF3AQ9H1J1 MIR5087-201ENST00000635826 76 ntBASIC0.59□□□□□ -2.31
UPF3AQ9H1J1 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.58□□□□□ -2.32
UPF3AQ9H1J1 Y_RNA.247-201ENST00000364500 92 ntBASIC0.58□□□□□ -2.32
UPF3AQ9H1J1 RNU4-67P-201ENST00000364569 141 ntBASIC0.58□□□□□ -2.32
UPF3AQ9H1J1 MIR759-201ENST00000390224 91 ntBASIC0.58□□□□□ -2.32
UPF3AQ9H1J1 SNORA7.5-201ENST00000410672 110 ntBASIC0.58□□□□□ -2.32
UPF3AQ9H1J1 AL606753.1-201ENST00000427435 87 ntBASIC0.58□□□□□ -2.32
UPF3AQ9H1J1 SNORA31.14-201ENST00000516728 116 ntBASIC0.58□□□□□ -2.32
UPF3AQ9H1J1 MIR4679-2-201ENST00000578358 77 ntBASIC0.58□□□□□ -2.32
UPF3AQ9H1J1 MIR8087-201ENST00000612745 78 ntBASIC0.58□□□□□ -2.32
UPF3AQ9H1J1 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.58□□□□□ -2.32
UPF3AQ9H1J1 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.57□□□□□ -2.32
UPF3AQ9H1J1 Y_RNA.98-201ENST00000363109 102 ntBASIC0.57□□□□□ -2.32
UPF3AQ9H1J1 Y_RNA.536-201ENST00000384621 113 ntBASIC0.57□□□□□ -2.32
UPF3AQ9H1J1 SNORA19-201ENST00000384737 128 ntBASIC0.57□□□□□ -2.32
UPF3AQ9H1J1 RNA5SP222-201ENST00000411039 105 ntBASIC0.57□□□□□ -2.32
UPF3AQ9H1J1 RNU6-1194P-201ENST00000516208 104 ntBASIC0.57□□□□□ -2.32
UPF3AQ9H1J1 RNU6-479P-201ENST00000516348 105 ntBASIC0.57□□□□□ -2.32
UPF3AQ9H1J1 DEFB131E-201ENST00000532329 154 ntBASIC0.57□□□□□ -2.32
UPF3AQ9H1J1 AP001362.1-201ENST00000625165 124 ntBASIC0.57□□□□□ -2.32
UPF3AQ9H1J1 AL162726.3-218ENST00000636401 95 ntBASIC0.57□□□□□ -2.32
UPF3AQ9H1J1 RNU4-58P-201ENST00000363192 141 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 SNORA63.5-201ENST00000363548 123 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 Y_RNA.360-201ENST00000365512 102 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 RNU6-429P-201ENST00000384582 108 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 MIR644A-201ENST00000385262 94 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 MIR548A3-201ENST00000385297 97 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 RNU6-816P-201ENST00000390914 107 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 RNU6-1268P-201ENST00000391214 107 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 RNU6-1239P-201ENST00000391310 107 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 Y_RNA.697-201ENST00000516776 113 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 RNU6-789P-201ENST00000517105 102 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 AL670379.3-201ENST00000605040 251 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 AL109933.3-201ENST00000619095 188 ntBASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.56□□□□□ -2.32
UPF3AQ9H1J1 Y_RNA.35-201ENST00000362601 101 ntBASIC0.55□□□□□ -2.32
UPF3AQ9H1J1 RNU6-1313P-201ENST00000362622 102 ntBASIC0.55□□□□□ -2.32
UPF3AQ9H1J1 RNU6-865P-201ENST00000364772 107 ntBASIC0.55□□□□□ -2.32
UPF3AQ9H1J1 RNU6-535P-201ENST00000384722 107 ntBASIC0.55□□□□□ -2.32
UPF3AQ9H1J1 RNU6-1154P-201ENST00000391001 104 ntBASIC0.55□□□□□ -2.32
UPF3AQ9H1J1 BX276092.1-201ENST00000427368 251 ntBASIC0.55□□□□□ -2.32
UPF3AQ9H1J1 RPL39P34-201ENST00000477141 156 ntBASIC0.55□□□□□ -2.32
UPF3AQ9H1J1 RNA5SP121-201ENST00000516537 101 ntBASIC0.55□□□□□ -2.32
UPF3AQ9H1J1 MIR4500-201ENST00000579472 76 ntBASIC0.55□□□□□ -2.32
UPF3AQ9H1J1 AC243829.6-201ENST00000612652 106 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 159.2 ms