Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-535P-201ENST00000384722 107 ntBASIC0.55□□□□□ -2.32
USP28Q96RU2 MIR548A1-201ENST00000385041 97 ntBASIC0.55□□□□□ -2.32
USP28Q96RU2 MIR759-201ENST00000390224 91 ntBASIC0.55□□□□□ -2.32
USP28Q96RU2 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.55□□□□□ -2.32
USP28Q96RU2 SNORA7.5-201ENST00000410672 110 ntBASIC0.55□□□□□ -2.32
USP28Q96RU2 AP003327.1-201ENST00000529684 127 ntBASIC0.55□□□□□ -2.32
USP28Q96RU2 MIR4500-201ENST00000579472 76 ntBASIC0.55□□□□□ -2.32
USP28Q96RU2 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.55□□□□□ -2.32
USP28Q96RU2 RNU4-58P-201ENST00000363192 141 ntBASIC0.54□□□□□ -2.32
USP28Q96RU2 RNU4-67P-201ENST00000364569 141 ntBASIC0.54□□□□□ -2.32
USP28Q96RU2 RNU6-865P-201ENST00000364772 107 ntBASIC0.54□□□□□ -2.32
USP28Q96RU2 Y_RNA.353-201ENST00000365440 108 ntBASIC0.54□□□□□ -2.32
USP28Q96RU2 RNU6-679P-201ENST00000391003 106 ntBASIC0.54□□□□□ -2.32
USP28Q96RU2 BX276092.1-201ENST00000427368 251 ntBASIC0.54□□□□□ -2.32
USP28Q96RU2 Y_RNA.649-201ENST00000459077 103 ntBASIC0.54□□□□□ -2.32
USP28Q96RU2 RNU6-1194P-201ENST00000516208 104 ntBASIC0.54□□□□□ -2.32
USP28Q96RU2 RNU6-1223P-201ENST00000517124 104 ntBASIC0.54□□□□□ -2.32
USP28Q96RU2 MIR3678-201ENST00000578455 94 ntBASIC0.54□□□□□ -2.32
USP28Q96RU2 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.54□□□□□ -2.32
USP28Q96RU2 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.53□□□□□ -2.32
USP28Q96RU2 Y_RNA.98-201ENST00000363109 102 ntBASIC0.53□□□□□ -2.32
USP28Q96RU2 Y_RNA.247-201ENST00000364500 92 ntBASIC0.53□□□□□ -2.32
USP28Q96RU2 RNA5SP117-201ENST00000365294 118 ntBASIC0.53□□□□□ -2.32
USP28Q96RU2 AP001362.1-201ENST00000625165 124 ntBASIC0.53□□□□□ -2.32
USP28Q96RU2 RNY4P6-201ENST00000363667 96 ntBASIC0.52□□□□□ -2.33
USP28Q96RU2 MIR140-201ENST00000385282 100 ntBASIC0.52□□□□□ -2.33
USP28Q96RU2 AC098934.3-201ENST00000430450 190 ntBASIC0.52□□□□□ -2.33
USP28Q96RU2 AC018659.1-201ENST00000551083 169 ntBASIC0.52□□□□□ -2.33
USP28Q96RU2 AC007012.1-201ENST00000567192 175 ntBASIC0.52□□□□□ -2.33
USP28Q96RU2 AC132825.6-201ENST00000638861 357 ntBASIC0.52□□□□□ -2.33
USP28Q96RU2 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
USP28Q96RU2 MIR101-2-201ENST00000362195 79 ntBASIC0.51□□□□□ -2.33
USP28Q96RU2 RNU6-363P-201ENST00000362895 105 ntBASIC0.51□□□□□ -2.33
USP28Q96RU2 Y_RNA.360-201ENST00000365512 102 ntBASIC0.51□□□□□ -2.33
USP28Q96RU2 RNU6-945P-201ENST00000383947 107 ntBASIC0.51□□□□□ -2.33
USP28Q96RU2 RNU6-429P-201ENST00000384582 108 ntBASIC0.51□□□□□ -2.33
USP28Q96RU2 AC092628.1-201ENST00000436250 252 ntBASIC0.51□□□□□ -2.33
USP28Q96RU2 RNA5SP94-201ENST00000516917 108 ntBASIC0.51□□□□□ -2.33
USP28Q96RU2 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.51□□□□□ -2.33
USP28Q96RU2 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.51□□□□□ -2.33
USP28Q96RU2 SNORA36.1-201ENST00000363424 132 ntBASIC0.5□□□□□ -2.33
USP28Q96RU2 Y_RNA.155-201ENST00000363632 101 ntBASIC0.5□□□□□ -2.33
USP28Q96RU2 SNORD18A-201ENST00000363753 72 ntBASIC0.5□□□□□ -2.33
USP28Q96RU2 RNU6-22P-201ENST00000384355 107 ntBASIC0.5□□□□□ -2.33
USP28Q96RU2 MIR548A3-201ENST00000385297 97 ntBASIC0.5□□□□□ -2.33
USP28Q96RU2 RNU6-816P-201ENST00000390914 107 ntBASIC0.5□□□□□ -2.33
USP28Q96RU2 RNU6-1268P-201ENST00000391214 107 ntBASIC0.5□□□□□ -2.33
USP28Q96RU2 RNU6-1239P-201ENST00000391310 107 ntBASIC0.5□□□□□ -2.33
USP28Q96RU2 RNU6-1006P-201ENST00000516998 103 ntBASIC0.5□□□□□ -2.33
USP28Q96RU2 MIR5000-201ENST00000577717 103 ntBASIC0.5□□□□□ -2.33
USP28Q96RU2 AL162726.3-218ENST00000636401 95 ntBASIC0.5□□□□□ -2.33
USP28Q96RU2 U6.95-201ENST00000636931 70 ntBASIC0.5□□□□□ -2.33
USP28Q96RU2 RNA5SP517-201ENST00000364724 117 ntBASIC0.49□□□□□ -2.33
USP28Q96RU2 Y_RNA.567-201ENST00000384736 106 ntBASIC0.49□□□□□ -2.33
USP28Q96RU2 AC008267.6-201ENST00000441664 139 ntBASIC0.49□□□□□ -2.33
USP28Q96RU2 TRAJ51-201ENST00000504127 63 ntBASIC0.49□□□□□ -2.33
USP28Q96RU2 AL670379.3-201ENST00000605040 251 ntBASIC0.49□□□□□ -2.33
USP28Q96RU2 MIR6515-201ENST00000619843 57 ntBASIC0.49□□□□□ -2.33
USP28Q96RU2 RNU6-1313P-201ENST00000362622 102 ntBASIC0.48□□□□□ -2.33
USP28Q96RU2 RNU6-409P-201ENST00000384114 104 ntBASIC0.48□□□□□ -2.33
USP28Q96RU2 Y_RNA.563-201ENST00000384707 108 ntBASIC0.48□□□□□ -2.33
USP28Q96RU2 AC114737.2-201ENST00000421583 173 ntBASIC0.48□□□□□ -2.33
USP28Q96RU2 RNU6-229P-201ENST00000516614 102 ntBASIC0.48□□□□□ -2.33
USP28Q96RU2 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.48□□□□□ -2.33
USP28Q96RU2 AL512310.12-203ENST00000640543 90 ntBASIC0.48□□□□□ -2.33
USP28Q96RU2 Y_RNA.35-201ENST00000362601 101 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 Y_RNA.56-201ENST00000362798 112 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 Y_RNA.85-201ENST00000363014 111 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 Y_RNA.174-201ENST00000363781 105 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 SNORD113-1-201ENST00000365321 69 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 Y_RNA.507-201ENST00000384500 99 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 RNU6-1117P-201ENST00000384525 104 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 RNU6-1168P-201ENST00000390831 104 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 RNU4-61P-201ENST00000411243 107 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 MIR4679-2-201ENST00000578358 77 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 SNORA25.18-201ENST00000607153 114 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 AC022709.1-201ENST00000615967 87 ntBASIC0.47□□□□□ -2.33
USP28Q96RU2 RNA5SP347-201ENST00000362445 119 ntBASIC0.46□□□□□ -2.34
USP28Q96RU2 RNU4-45P-201ENST00000365469 141 ntBASIC0.46□□□□□ -2.34
USP28Q96RU2 RNU6-1201P-201ENST00000384227 107 ntBASIC0.46□□□□□ -2.34
USP28Q96RU2 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.46□□□□□ -2.34
USP28Q96RU2 SNRPGP12-201ENST00000449481 213 ntBASIC0.46□□□□□ -2.34
USP28Q96RU2 RPL39P34-201ENST00000477141 156 ntBASIC0.46□□□□□ -2.34
USP28Q96RU2 RNU6-469P-201ENST00000516253 101 ntBASIC0.46□□□□□ -2.34
USP28Q96RU2 MIR7111-201ENST00000619751 72 ntBASIC0.46□□□□□ -2.34
USP28Q96RU2 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.46□□□□□ -2.34
USP28Q96RU2 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.45□□□□□ -2.34
USP28Q96RU2 Y_RNA.49-201ENST00000362714 112 ntBASIC0.45□□□□□ -2.34
USP28Q96RU2 RNA5SP205-201ENST00000364653 136 ntBASIC0.45□□□□□ -2.34
USP28Q96RU2 U8.6-201ENST00000364939 135 ntBASIC0.45□□□□□ -2.34
USP28Q96RU2 SNORD28-201ENST00000384706 75 ntBASIC0.45□□□□□ -2.34
USP28Q96RU2 SNORA19-201ENST00000384737 128 ntBASIC0.45□□□□□ -2.34
USP28Q96RU2 MIR489-201ENST00000384923 84 ntBASIC0.45□□□□□ -2.34
USP28Q96RU2 MIR577-201ENST00000385196 96 ntBASIC0.45□□□□□ -2.34
USP28Q96RU2 RNU6-1154P-201ENST00000391001 104 ntBASIC0.45□□□□□ -2.34
USP28Q96RU2 AL606753.1-201ENST00000427435 87 ntBASIC0.45□□□□□ -2.34
USP28Q96RU2 RNU7-106P-201ENST00000459514 67 ntBASIC0.45□□□□□ -2.34
USP28Q96RU2 SNORA68.3-201ENST00000515906 83 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms