Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 Y_RNA.536-201ENST00000384621 113 ntBASIC0.67□□□□□ -2.3
HOXA1P49639 RNU6-351P-201ENST00000516097 100 ntBASIC0.67□□□□□ -2.3
HOXA1P49639 RNU6-765P-201ENST00000516916 99 ntBASIC0.67□□□□□ -2.3
HOXA1P49639 RNU6-1006P-201ENST00000516998 103 ntBASIC0.67□□□□□ -2.3
HOXA1P49639 MIR4679-2-201ENST00000578358 77 ntBASIC0.67□□□□□ -2.3
HOXA1P49639 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
HOXA1P49639 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.66□□□□□ -2.3
HOXA1P49639 MIR101-2-201ENST00000362195 79 ntBASIC0.66□□□□□ -2.3
HOXA1P49639 MIR18A-201ENST00000362310 71 ntBASIC0.66□□□□□ -2.3
HOXA1P49639 RNU6-1056P-201ENST00000383996 107 ntBASIC0.66□□□□□ -2.3
HOXA1P49639 SNORD100-201ENST00000408573 76 ntBASIC0.66□□□□□ -2.3
HOXA1P49639 RPL39P34-201ENST00000477141 156 ntBASIC0.66□□□□□ -2.3
HOXA1P49639 MIR3613-201ENST00000579844 87 ntBASIC0.66□□□□□ -2.3
HOXA1P49639 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.66□□□□□ -2.3
HOXA1P49639 MIR6866-201ENST00000638146 69 ntBASIC0.66□□□□□ -2.3
HOXA1P49639 RNU6-1313P-201ENST00000362622 102 ntBASIC0.65□□□□□ -2.31
HOXA1P49639 Y_RNA.281-201ENST00000364774 94 ntBASIC0.65□□□□□ -2.31
HOXA1P49639 RNU6-1107P-201ENST00000364817 104 ntBASIC0.65□□□□□ -2.31
HOXA1P49639 Y_RNA.309-201ENST00000365046 111 ntBASIC0.65□□□□□ -2.31
HOXA1P49639 RNA5SP117-201ENST00000365294 118 ntBASIC0.65□□□□□ -2.31
HOXA1P49639 MIR577-201ENST00000385196 96 ntBASIC0.65□□□□□ -2.31
HOXA1P49639 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.65□□□□□ -2.31
HOXA1P49639 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.65□□□□□ -2.31
HOXA1P49639 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.65□□□□□ -2.31
HOXA1P49639 MIR4698-201ENST00000577795 80 ntBASIC0.65□□□□□ -2.31
HOXA1P49639 MIR5009-201ENST00000578736 100 ntBASIC0.65□□□□□ -2.31
HOXA1P49639 uc_338.16-201ENST00000621804 95 ntBASIC0.65□□□□□ -2.31
HOXA1P49639 Y_RNA.291-201ENST00000364886 113 ntBASIC0.64□□□□□ -2.31
HOXA1P49639 RNU6-1201P-201ENST00000384227 107 ntBASIC0.64□□□□□ -2.31
HOXA1P49639 RNU6-1081P-201ENST00000384537 107 ntBASIC0.64□□□□□ -2.31
HOXA1P49639 MIR548I2-201ENST00000408348 149 ntBASIC0.64□□□□□ -2.31
HOXA1P49639 MIR1912-201ENST00000410389 80 ntBASIC0.64□□□□□ -2.31
HOXA1P49639 SNORA19.1-201ENST00000410656 129 ntBASIC0.64□□□□□ -2.31
HOXA1P49639 SPINT5P-201ENST00000448174 155 ntBASIC0.64□□□□□ -2.31
HOXA1P49639 AP003327.1-201ENST00000529684 127 ntBASIC0.64□□□□□ -2.31
HOXA1P49639 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
HOXA1P49639 SNORA25.9-201ENST00000365087 128 ntBASIC0.63□□□□□ -2.31
HOXA1P49639 RNU6-1014P-201ENST00000383940 103 ntBASIC0.63□□□□□ -2.31
HOXA1P49639 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.63□□□□□ -2.31
HOXA1P49639 TRAJ51-201ENST00000504127 63 ntBASIC0.63□□□□□ -2.31
HOXA1P49639 MTND5P40-201ENST00000559945 246 ntBASIC0.63□□□□□ -2.31
HOXA1P49639 MIR3678-201ENST00000578455 94 ntBASIC0.63□□□□□ -2.31
HOXA1P49639 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.62□□□□□ -2.31
HOXA1P49639 RNU6-1325P-201ENST00000364905 105 ntBASIC0.62□□□□□ -2.31
HOXA1P49639 AC004941.2-201ENST00000427009 228 ntBASIC0.62□□□□□ -2.31
HOXA1P49639 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.62□□□□□ -2.31
HOXA1P49639 RNU6-589P-201ENST00000516485 107 ntBASIC0.62□□□□□ -2.31
HOXA1P49639 uc_338.28-201ENST00000612082 187 ntBASIC0.62□□□□□ -2.31
HOXA1P49639 AL442128.1-201ENST00000615151 90 ntBASIC0.62□□□□□ -2.31
HOXA1P49639 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.62□□□□□ -2.31
HOXA1P49639 Y_RNA.273-201ENST00000364703 102 ntBASIC0.61□□□□□ -2.31
HOXA1P49639 SNORD20-201ENST00000384550 80 ntBASIC0.61□□□□□ -2.31
HOXA1P49639 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.61□□□□□ -2.31
HOXA1P49639 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.61□□□□□ -2.31
HOXA1P49639 AC092628.1-201ENST00000436250 252 ntBASIC0.61□□□□□ -2.31
HOXA1P49639 SNRPGP12-201ENST00000449481 213 ntBASIC0.61□□□□□ -2.31
HOXA1P49639 RNU6-850P-201ENST00000516934 103 ntBASIC0.61□□□□□ -2.31
HOXA1P49639 AC141557.1-201ENST00000540982 400 ntBASIC0.61□□□□□ -2.31
HOXA1P49639 MIR548Z-201ENST00000584743 97 ntBASIC0.61□□□□□ -2.31
HOXA1P49639 AC091304.10-201ENST00000641554 121 ntBASIC0.61□□□□□ -2.31
HOXA1P49639 Y_RNA.56-201ENST00000362798 112 ntBASIC0.6□□□□□ -2.31
HOXA1P49639 RNU6-832P-201ENST00000363319 107 ntBASIC0.6□□□□□ -2.31
HOXA1P49639 RNU6-1099P-201ENST00000363533 107 ntBASIC0.6□□□□□ -2.31
HOXA1P49639 Y_RNA.323-201ENST00000365157 109 ntBASIC0.6□□□□□ -2.31
HOXA1P49639 MIR548G-201ENST00000408442 89 ntBASIC0.6□□□□□ -2.31
HOXA1P49639 RNU7-106P-201ENST00000459514 67 ntBASIC0.6□□□□□ -2.31
HOXA1P49639 RNU6-1018P-201ENST00000516577 106 ntBASIC0.6□□□□□ -2.31
HOXA1P49639 RNA5SP102-201ENST00000516865 106 ntBASIC0.6□□□□□ -2.31
HOXA1P49639 MIR8070-201ENST00000616510 88 ntBASIC0.6□□□□□ -2.31
HOXA1P49639 Y_RNA.49-201ENST00000362714 112 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 SNORD114-27-201ENST00000363766 70 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 SNORD38.1-201ENST00000363863 68 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 MIR499A-201ENST00000384903 122 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 RNY4P18-201ENST00000391107 89 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 SNORD63B-201ENST00000411005 70 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 RNU7-195P-201ENST00000458793 62 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 Y_RNA.659-201ENST00000515994 113 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 RNU6-412P-201ENST00000516434 106 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 Y_RNA.709-201ENST00000516952 92 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 MIR4694-201ENST00000578534 80 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 MIR548AI-201ENST00000579940 88 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 MIR6504-201ENST00000613520 61 ntBASIC0.59□□□□□ -2.31
HOXA1P49639 RNU6-834P-201ENST00000362367 110 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 SNORA63.4-201ENST00000362763 126 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 RNY3P2-201ENST00000362918 102 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 SNORD18A-201ENST00000363753 72 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 Y_RNA.191-201ENST00000363972 113 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 Y_RNA.224-201ENST00000364308 111 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 Y_RNA.567-201ENST00000384736 106 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 MIR635-201ENST00000384830 98 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 MIR516A2-201ENST00000384888 90 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 MIR516A1-201ENST00000385033 90 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 MIR140-201ENST00000385282 100 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 RNU6-554P-201ENST00000410466 106 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 RNA5SP247-201ENST00000411181 105 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 Y_RNA.629-201ENST00000411368 105 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 MIR3973-201ENST00000579824 107 ntBASIC0.58□□□□□ -2.32
HOXA1P49639 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
HOXA1P49639 RNU6-170P-201ENST00000362832 104 ntBASIC0.57□□□□□ -2.32
HOXA1P49639 SNORA36.1-201ENST00000363424 132 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 211.9 ms