Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 RNA5SP95-201ENST00000410319 137 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 snoU13.11-201ENST00000459219 104 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 RNU6-1194P-201ENST00000516208 104 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 RNU6-531P-201ENST00000516694 104 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 RNU6-557P-201ENST00000516842 110 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 RNU6-165P-201ENST00000517170 99 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 MIR6845-201ENST00000613182 61 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 MIR8063-201ENST00000621930 81 ntBASIC1.65□□□□□ -2.15
LIMS1P48059 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
LIMS1P48059 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
LIMS1P48059 RNU4-58P-201ENST00000363192 141 ntBASIC1.64□□□□□ -2.15
LIMS1P48059 Y_RNA.508-201ENST00000384502 114 ntBASIC1.64□□□□□ -2.15
LIMS1P48059 SNORA25.16-201ENST00000516741 121 ntBASIC1.64□□□□□ -2.15
LIMS1P48059 AC145423.2-201ENST00000610631 239 ntBASIC1.64□□□□□ -2.15
LIMS1P48059 MIR337-201ENST00000362281 93 ntBASIC1.63□□□□□ -2.15
LIMS1P48059 RNU1-17P-201ENST00000363022 152 ntBASIC1.63□□□□□ -2.15
LIMS1P48059 Y_RNA.283-201ENST00000364798 112 ntBASIC1.63□□□□□ -2.15
LIMS1P48059 RNU1-36P-201ENST00000365130 165 ntBASIC1.63□□□□□ -2.15
LIMS1P48059 RNU6-53P-201ENST00000365367 106 ntBASIC1.63□□□□□ -2.15
LIMS1P48059 AC073261.1-201ENST00000429409 121 ntBASIC1.63□□□□□ -2.15
LIMS1P48059 snoU13.9-201ENST00000458927 103 ntBASIC1.63□□□□□ -2.15
LIMS1P48059 MIR4796-201ENST00000580742 81 ntBASIC1.63□□□□□ -2.15
LIMS1P48059 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
LIMS1P48059 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.63□□□□□ -2.15
LIMS1P48059 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
LIMS1P48059 SNORD33-201ENST00000362761 85 ntBASIC1.62□□□□□ -2.15
LIMS1P48059 Y_RNA.164-201ENST00000363709 102 ntBASIC1.62□□□□□ -2.15
LIMS1P48059 RNU6-811P-201ENST00000384069 107 ntBASIC1.62□□□□□ -2.15
LIMS1P48059 MIR9-3-201ENST00000385084 90 ntBASIC1.62□□□□□ -2.15
LIMS1P48059 MIR30A-201ENST00000385092 71 ntBASIC1.62□□□□□ -2.15
LIMS1P48059 MIR519A1-201ENST00000385257 85 ntBASIC1.62□□□□□ -2.15
LIMS1P48059 RNA5SP292-201ENST00000390974 118 ntBASIC1.62□□□□□ -2.15
LIMS1P48059 RNU6-243P-201ENST00000391140 107 ntBASIC1.62□□□□□ -2.15
LIMS1P48059 AC003989.2-201ENST00000440224 169 ntBASIC1.62□□□□□ -2.15
LIMS1P48059 AL450471.1-201ENST00000447509 127 ntBASIC1.62□□□□□ -2.15
LIMS1P48059 RNU7-106P-201ENST00000459514 67 ntBASIC1.62□□□□□ -2.15
LIMS1P48059 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.62□□□□□ -2.15
LIMS1P48059 MIR3664-201ENST00000579074 99 ntBASIC1.62□□□□□ -2.15
LIMS1P48059 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
LIMS1P48059 SNORA63.2-201ENST00000362603 126 ntBASIC1.61□□□□□ -2.15
LIMS1P48059 MIR889-201ENST00000401280 79 ntBASIC1.61□□□□□ -2.15
LIMS1P48059 SNORD93-201ENST00000408813 74 ntBASIC1.61□□□□□ -2.15
LIMS1P48059 SNORD63B-201ENST00000411005 70 ntBASIC1.61□□□□□ -2.15
LIMS1P48059 AC079140.2-201ENST00000506193 142 ntBASIC1.61□□□□□ -2.15
LIMS1P48059 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.61□□□□□ -2.15
LIMS1P48059 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.61□□□□□ -2.15
LIMS1P48059 MIRLET7A1-201ENST00000362295 80 ntBASIC1.6□□□□□ -2.15
LIMS1P48059 RNU6-1054P-201ENST00000411293 104 ntBASIC1.6□□□□□ -2.15
LIMS1P48059 AC023790.1-201ENST00000482174 347 ntBASIC1.6□□□□□ -2.15
LIMS1P48059 AC139453.2-201ENST00000487255 133 ntBASIC1.6□□□□□ -2.15
LIMS1P48059 AC019176.1-201ENST00000518519 225 ntBASIC1.6□□□□□ -2.15
LIMS1P48059 MIR3064-201ENST00000581130 66 ntBASIC1.6□□□□□ -2.15
LIMS1P48059 MIR4536-1-201ENST00000583537 88 ntBASIC1.6□□□□□ -2.15
LIMS1P48059 SNORD92-201ENST00000585078 85 ntBASIC1.6□□□□□ -2.15
LIMS1P48059 snoU13.31-201ENST00000607291 104 ntBASIC1.6□□□□□ -2.15
LIMS1P48059 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.6□□□□□ -2.15
LIMS1P48059 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
LIMS1P48059 RNU6-132P-201ENST00000383863 107 ntBASIC1.59□□□□□ -2.15
LIMS1P48059 RNU6-1065P-201ENST00000384513 106 ntBASIC1.59□□□□□ -2.15
LIMS1P48059 RNU6-466P-201ENST00000391224 103 ntBASIC1.59□□□□□ -2.15
LIMS1P48059 SNORD100-201ENST00000408573 76 ntBASIC1.59□□□□□ -2.15
LIMS1P48059 RNU7-185P-201ENST00000459215 60 ntBASIC1.59□□□□□ -2.15
LIMS1P48059 FGF7P7-201ENST00000514120 227 ntBASIC1.59□□□□□ -2.15
LIMS1P48059 SNORA44.1-201ENST00000517031 108 ntBASIC1.59□□□□□ -2.15
LIMS1P48059 AL512310.8-201ENST00000550183 120 ntBASIC1.59□□□□□ -2.15
LIMS1P48059 AC104996.3-201ENST00000590718 94 ntBASIC1.59□□□□□ -2.15
LIMS1P48059 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
LIMS1P48059 Y_RNA.226-201ENST00000364337 114 ntBASIC1.58□□□□□ -2.16
LIMS1P48059 MIR520H-201ENST00000385126 88 ntBASIC1.58□□□□□ -2.16
LIMS1P48059 SNORA40.18-201ENST00000391200 128 ntBASIC1.58□□□□□ -2.16
LIMS1P48059 snoU13.21-201ENST00000459368 105 ntBASIC1.58□□□□□ -2.16
LIMS1P48059 Y_RNA.660-201ENST00000516002 120 ntBASIC1.58□□□□□ -2.16
LIMS1P48059 SNORA18.5-201ENST00000516616 101 ntBASIC1.58□□□□□ -2.16
LIMS1P48059 U7.4-201ENST00000614961 63 ntBASIC1.58□□□□□ -2.16
LIMS1P48059 MIR378A-201ENST00000362177 66 ntBASIC1.57□□□□□ -2.16
LIMS1P48059 RNU6-1094P-201ENST00000362416 104 ntBASIC1.57□□□□□ -2.16
LIMS1P48059 RNU6-957P-201ENST00000363652 99 ntBASIC1.57□□□□□ -2.16
LIMS1P48059 RNU6-686P-201ENST00000364839 107 ntBASIC1.57□□□□□ -2.16
LIMS1P48059 TRAJ51-201ENST00000504127 63 ntBASIC1.57□□□□□ -2.16
LIMS1P48059 SNORA25.15-201ENST00000516487 89 ntBASIC1.57□□□□□ -2.16
LIMS1P48059 RNU6-765P-201ENST00000516916 99 ntBASIC1.57□□□□□ -2.16
LIMS1P48059 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.57□□□□□ -2.16
LIMS1P48059 MIR6082-201ENST00000613604 109 ntBASIC1.57□□□□□ -2.16
LIMS1P48059 AC023934.1-201ENST00000574529 2389 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 RNU6-403P-201ENST00000363163 104 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 Y_RNA.536-201ENST00000384621 113 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
LIMS1P48059 MIR548U-201ENST00000390728 81 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 MIR1257-201ENST00000408490 117 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 AC108667.1-201ENST00000428618 249 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 MIR3198-2-201ENST00000577868 80 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 MIR3937-201ENST00000580135 106 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 MIR548H5-201ENST00000580314 60 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 MIR4285-201ENST00000581001 85 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 MIR4781-201ENST00000585250 76 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 AC013244.2-201ENST00000603396 103 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 RNU7-10P-201ENST00000607194 63 ntBASIC1.56□□□□□ -2.16
LIMS1P48059 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 169.9 ms