Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MIR6755-201ENST00000619993 66 ntBASIC0.1□□□□□ -2.39
CDX1P47902 AC244505.6-201ENST00000452829 130 ntBASIC0.09□□□□□ -2.4
CDX1P47902 RNU7-129P-201ENST00000516128 62 ntBASIC0.09□□□□□ -2.4
CDX1P47902 AC004792.1-201ENST00000614523 137 ntBASIC0.09□□□□□ -2.4
CDX1P47902 MIR6718-201ENST00000616153 80 ntBASIC0.09□□□□□ -2.4
CDX1P47902 RNU6-449P-201ENST00000383914 107 ntBASIC0.08□□□□□ -2.4
CDX1P47902 MIR760-201ENST00000390220 80 ntBASIC0.08□□□□□ -2.4
CDX1P47902 PCNPP3-201ENST00000393579 471 ntBASIC0.08□□□□□ -2.4
CDX1P47902 MIR513C-201ENST00000401352 84 ntBASIC0.08□□□□□ -2.4
CDX1P47902 RNU6-848P-201ENST00000515948 107 ntBASIC0.08□□□□□ -2.4
CDX1P47902 RNU6-617P-201ENST00000516147 107 ntBASIC0.08□□□□□ -2.4
CDX1P47902 RNU6-473P-201ENST00000516164 107 ntBASIC0.08□□□□□ -2.4
CDX1P47902 RNU6-1049P-201ENST00000516414 107 ntBASIC0.08□□□□□ -2.4
CDX1P47902 Y_RNA.692-201ENST00000516627 105 ntBASIC0.08□□□□□ -2.4
CDX1P47902 AC108081.1-201ENST00000604358 221 ntBASIC0.08□□□□□ -2.4
CDX1P47902 MIR2909-201ENST00000617113 69 ntBASIC0.08□□□□□ -2.4
CDX1P47902 RNA5SP214-201ENST00000363378 118 ntBASIC0.07□□□□□ -2.4
CDX1P47902 Y_RNA.257-201ENST00000364596 102 ntBASIC0.07□□□□□ -2.4
CDX1P47902 RNU6-865P-201ENST00000364772 107 ntBASIC0.07□□□□□ -2.4
CDX1P47902 SNORA2A-201ENST00000383885 135 ntBASIC0.07□□□□□ -2.4
CDX1P47902 RNU6-1104P-201ENST00000384723 104 ntBASIC0.07□□□□□ -2.4
CDX1P47902 MIR1295A-201ENST00000408463 79 ntBASIC0.07□□□□□ -2.4
CDX1P47902 RNU7-2P-201ENST00000516096 62 ntBASIC0.07□□□□□ -2.4
CDX1P47902 MIR4752-201ENST00000579672 72 ntBASIC0.07□□□□□ -2.4
CDX1P47902 Y_RNA.778-201ENST00000620203 90 ntBASIC0.07□□□□□ -2.4
CDX1P47902 RNA5SP257-201ENST00000363023 116 ntBASIC0.06□□□□□ -2.4
CDX1P47902 RNU7-104P-201ENST00000459398 79 ntBASIC0.06□□□□□ -2.4
CDX1P47902 AC074198.2-201ENST00000508153 258 ntBASIC0.06□□□□□ -2.4
CDX1P47902 AP001362.1-201ENST00000625165 124 ntBASIC0.06□□□□□ -2.4
CDX1P47902 RNU6-726P-201ENST00000364680 107 ntBASIC0.05□□□□□ -2.4
CDX1P47902 Y_RNA.328-201ENST00000365208 113 ntBASIC0.05□□□□□ -2.4
CDX1P47902 Y_RNA.785-201ENST00000384290 109 ntBASIC0.05□□□□□ -2.4
CDX1P47902 RNU6-616P-201ENST00000384353 107 ntBASIC0.05□□□□□ -2.4
CDX1P47902 RNU6-460P-201ENST00000391158 108 ntBASIC0.05□□□□□ -2.4
CDX1P47902 BX276092.1-201ENST00000427368 251 ntBASIC0.05□□□□□ -2.4
CDX1P47902 RNU7-6P-201ENST00000516845 62 ntBASIC0.05□□□□□ -2.4
CDX1P47902 AC067863.3-201ENST00000624172 122 ntBASIC0.05□□□□□ -2.4
CDX1P47902 RNU6-915P-201ENST00000364943 103 ntBASIC0.04□□□□□ -2.4
CDX1P47902 SNORD115-35-201ENST00000365122 82 ntBASIC0.04□□□□□ -2.4
CDX1P47902 MIR759-201ENST00000390224 91 ntBASIC0.04□□□□□ -2.4
CDX1P47902 RNU7-161P-201ENST00000517289 62 ntBASIC0.04□□□□□ -2.4
CDX1P47902 MIR3121-201ENST00000579680 77 ntBASIC0.04□□□□□ -2.4
CDX1P47902 Y_RNA.221-201ENST00000364248 96 ntBASIC0.03□□□□□ -2.4
CDX1P47902 RNA5SP128-201ENST00000365305 116 ntBASIC0.03□□□□□ -2.4
CDX1P47902 Y_RNA.362-201ENST00000365518 110 ntBASIC0.03□□□□□ -2.4
CDX1P47902 Y_RNA.374-201ENST00000365606 101 ntBASIC0.03□□□□□ -2.4
CDX1P47902 SNORD116-18-201ENST00000383961 92 ntBASIC0.03□□□□□ -2.4
CDX1P47902 MIR599-201ENST00000385069 95 ntBASIC0.03□□□□□ -2.4
CDX1P47902 MIR548I2-201ENST00000408348 149 ntBASIC0.03□□□□□ -2.4
CDX1P47902 TRAJ51-201ENST00000504127 63 ntBASIC0.03□□□□□ -2.4
CDX1P47902 RNU6-182P-201ENST00000516970 105 ntBASIC0.03□□□□□ -2.4
CDX1P47902 AC104408.1-201ENST00000605241 170 ntBASIC0.03□□□□□ -2.4
CDX1P47902 AC021753.1-201ENST00000635724 168 ntBASIC0.03□□□□□ -2.4
CDX1P47902 Y_RNA.127-201ENST00000363386 109 ntBASIC0.02□□□□□ -2.41
CDX1P47902 SNORA42.1-201ENST00000363515 137 ntBASIC0.02□□□□□ -2.41
CDX1P47902 SNORD114-9-201ENST00000364370 72 ntBASIC0.02□□□□□ -2.41
CDX1P47902 RNU6-1130P-201ENST00000365434 107 ntBASIC0.02□□□□□ -2.41
CDX1P47902 MIR610-201ENST00000385139 96 ntBASIC0.02□□□□□ -2.41
CDX1P47902 Y_RNA.580-201ENST00000391004 95 ntBASIC0.02□□□□□ -2.41
CDX1P47902 RNU7-197P-201ENST00000458836 62 ntBASIC0.02□□□□□ -2.41
CDX1P47902 RPL39P34-201ENST00000477141 156 ntBASIC0.02□□□□□ -2.41
CDX1P47902 MIR5190-201ENST00000581537 80 ntBASIC0.02□□□□□ -2.41
CDX1P47902 MIR499B-201ENST00000636498 73 ntBASIC0.02□□□□□ -2.41
CDX1P47902 Y_RNA.8-201ENST00000362353 102 ntBASIC0.01□□□□□ -2.41
CDX1P47902 MIR643-201ENST00000385267 97 ntBASIC0.01□□□□□ -2.41
CDX1P47902 RNU6-127P-201ENST00000390897 107 ntBASIC0.01□□□□□ -2.41
CDX1P47902 RNU6-1307P-201ENST00000391012 103 ntBASIC0.01□□□□□ -2.41
CDX1P47902 Y_RNA.660-201ENST00000516002 120 ntBASIC0.01□□□□□ -2.41
CDX1P47902 AP001328.1-201ENST00000528550 176 ntBASIC0.01□□□□□ -2.41
CDX1P47902 MIR4768-201ENST00000585270 74 ntBASIC0.01□□□□□ -2.41
CDX1P47902 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.01□□□□□ -2.41
CDX1P47902 RNA5SP403-201ENST00000363598 108 ntBASIC0□□□□□ -2.41
CDX1P47902 Y_RNA.280-201ENST00000364765 112 ntBASIC0□□□□□ -2.41
CDX1P47902 snosnR66.1-201ENST00000391095 99 ntBASIC0□□□□□ -2.41
CDX1P47902 RNU6-394P-201ENST00000410735 107 ntBASIC0□□□□□ -2.41
CDX1P47902 MIR548X2-201ENST00000579776 100 ntBASIC0□□□□□ -2.41
CDX1P47902 MIR3163-201ENST00000581592 73 ntBASIC0□□□□□ -2.41
CDX1P47902 MIR376B-201ENST00000614515 100 ntBASIC0□□□□□ -2.41
CDX1P47902 Y_RNA.114-201ENST00000363265 113 ntBASIC-0.01□□□□□ -2.41
CDX1P47902 AC108059.2-201ENST00000434626 151 ntBASIC-0.01□□□□□ -2.41
CDX1P47902 AC097635.1-201ENST00000450678 155 ntBASIC-0.01□□□□□ -2.41
CDX1P47902 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.01□□□□□ -2.41
CDX1P47902 MIR4667-201ENST00000578933 66 ntBASIC-0.01□□□□□ -2.41
CDX1P47902 AL162376.1-201ENST00000624117 175 ntBASIC-0.01□□□□□ -2.41
CDX1P47902 Y_RNA.213-201ENST00000364178 111 ntBASIC-0.02□□□□□ -2.41
CDX1P47902 RNU6-647P-201ENST00000364243 107 ntBASIC-0.02□□□□□ -2.41
CDX1P47902 RN7SKP19-201ENST00000516016 252 ntBASIC-0.02□□□□□ -2.41
CDX1P47902 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.02□□□□□ -2.41
CDX1P47902 MIR5706-201ENST00000579841 80 ntBASIC-0.02□□□□□ -2.41
CDX1P47902 U7.6-201ENST00000610841 64 ntBASIC-0.02□□□□□ -2.41
CDX1P47902 AC087741.2-201ENST00000619415 172 ntBASIC-0.02□□□□□ -2.41
CDX1P47902 SNORD114-16-201ENST00000363044 70 ntBASIC-0.03□□□□□ -2.41
CDX1P47902 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.03□□□□□ -2.41
CDX1P47902 Y_RNA.294-201ENST00000364916 102 ntBASIC-0.03□□□□□ -2.41
CDX1P47902 RNU6-804P-201ENST00000384286 107 ntBASIC-0.03□□□□□ -2.41
CDX1P47902 MIR1263-201ENST00000408324 86 ntBASIC-0.03□□□□□ -2.41
CDX1P47902 SNORD63B-201ENST00000411005 70 ntBASIC-0.03□□□□□ -2.41
CDX1P47902 Y_RNA.809-201ENST00000516058 95 ntBASIC-0.03□□□□□ -2.41
CDX1P47902 RNU6-521P-201ENST00000516663 105 ntBASIC-0.03□□□□□ -2.41
CDX1P47902 IGKV1-22-201ENST00000524313 326 ntBASIC-0.03□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 227.3 ms