Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 RNU7-62P-201ENST00000458856 62 ntBASIC2.56□□□□□ -2
ZC3H4Q9UPT8 AC079804.2-201ENST00000490376 200 ntBASIC2.56□□□□□ -2
ZC3H4Q9UPT8 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.56□□□□□ -2
ZC3H4Q9UPT8 RNU6-850P-201ENST00000516934 103 ntBASIC2.55□□□□□ -2
ZC3H4Q9UPT8 MIR4264-201ENST00000583520 66 ntBASIC2.55□□□□□ -2
ZC3H4Q9UPT8 GHRLOS.1-201ENST00000610995 70 ntBASIC2.55□□□□□ -2
ZC3H4Q9UPT8 AL359851.1-201ENST00000569460 4997 ntBASIC2.55□□□□□ -2
ZC3H4Q9UPT8 Y_RNA.119-201ENST00000363301 96 ntBASIC2.54□□□□□ -2
ZC3H4Q9UPT8 RNU6-776P-201ENST00000364403 104 ntBASIC2.54□□□□□ -2
ZC3H4Q9UPT8 RNU6-1022P-201ENST00000365049 104 ntBASIC2.54□□□□□ -2
ZC3H4Q9UPT8 RNU6-1165P-201ENST00000410119 107 ntBASIC2.54□□□□□ -2
ZC3H4Q9UPT8 TRMT112P2-201ENST00000512910 132 ntBASIC2.54□□□□□ -2
ZC3H4Q9UPT8 MIR8063-201ENST00000621930 81 ntBASIC2.54□□□□□ -2
ZC3H4Q9UPT8 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
ZC3H4Q9UPT8 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.53□□□□□ -2
ZC3H4Q9UPT8 MIR1302-7-201ENST00000408841 72 ntBASIC2.53□□□□□ -2
ZC3H4Q9UPT8 AC087499.7-201ENST00000441958 109 ntBASIC2.53□□□□□ -2
ZC3H4Q9UPT8 SNRPGP12-201ENST00000449481 213 ntBASIC2.53□□□□□ -2
ZC3H4Q9UPT8 MIR2115-201ENST00000516657 100 ntBASIC2.53□□□□□ -2
ZC3H4Q9UPT8 MIR4712-201ENST00000583750 82 ntBASIC2.53□□□□□ -2
ZC3H4Q9UPT8 AP000553.5-201ENST00000641933 54 ntBASIC2.53□□□□□ -2
ZC3H4Q9UPT8 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.52□□□□□ -2.01
ZC3H4Q9UPT8 MIR1236-201ENST00000408340 102 ntBASIC2.52□□□□□ -2.01
ZC3H4Q9UPT8 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC2.52□□□□□ -2.01
ZC3H4Q9UPT8 RNU7-153P-201ENST00000516455 62 ntBASIC2.52□□□□□ -2.01
ZC3H4Q9UPT8 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.52□□□□□ -2.01
ZC3H4Q9UPT8 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
ZC3H4Q9UPT8 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
ZC3H4Q9UPT8 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.51□□□□□ -2.01
ZC3H4Q9UPT8 Y_RNA.94-201ENST00000363068 106 ntBASIC2.51□□□□□ -2.01
ZC3H4Q9UPT8 MIR563-201ENST00000385080 79 ntBASIC2.5□□□□□ -2.01
ZC3H4Q9UPT8 RN7SL274P-201ENST00000492268 272 ntBASIC2.5□□□□□ -2.01
ZC3H4Q9UPT8 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.5□□□□□ -2.01
ZC3H4Q9UPT8 MIR103A2-201ENST00000362154 78 ntBASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 MIR30D-201ENST00000362283 70 ntBASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 RNU6-571P-201ENST00000384128 107 ntBASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 AP1B1P2-201ENST00000416196 106 ntBASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 SNORD4B-201ENST00000459083 72 ntBASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 AC104435.1-201ENST00000483483 166 ntBASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 AC140658.3-201ENST00000567603 271 ntBASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 AC015688.6-201ENST00000577737 104 ntBASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 MIR3198-2-201ENST00000577868 80 ntBASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
ZC3H4Q9UPT8 RNA5SP190-201ENST00000365222 118 ntBASIC2.48□□□□□ -2.01
ZC3H4Q9UPT8 SNORA72.6-201ENST00000384520 129 ntBASIC2.48□□□□□ -2.01
ZC3H4Q9UPT8 MIR30A-201ENST00000385092 71 ntBASIC2.48□□□□□ -2.01
ZC3H4Q9UPT8 AL512598.1-201ENST00000610158 273 ntBASIC2.48□□□□□ -2.01
ZC3H4Q9UPT8 MIR8074-201ENST00000615081 81 ntBASIC2.48□□□□□ -2.01
ZC3H4Q9UPT8 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
ZC3H4Q9UPT8 RNU6-53P-201ENST00000365367 106 ntBASIC2.47□□□□□ -2.01
ZC3H4Q9UPT8 SNORA67.5-201ENST00000391036 107 ntBASIC2.47□□□□□ -2.01
ZC3H4Q9UPT8 RNA5SP95-201ENST00000410319 137 ntBASIC2.47□□□□□ -2.01
ZC3H4Q9UPT8 RNA5SP338-201ENST00000410495 85 ntBASIC2.47□□□□□ -2.01
ZC3H4Q9UPT8 uc_338.6-201ENST00000613544 171 ntBASIC2.47□□□□□ -2.01
ZC3H4Q9UPT8 MIR6516-201ENST00000630554 81 ntBASIC2.47□□□□□ -2.01
ZC3H4Q9UPT8 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
ZC3H4Q9UPT8 SNORA40.18-201ENST00000391200 128 ntBASIC2.46□□□□□ -2.02
ZC3H4Q9UPT8 HMGN2P38-201ENST00000423806 265 ntBASIC2.46□□□□□ -2.02
ZC3H4Q9UPT8 SNORA25.13-201ENST00000516395 103 ntBASIC2.46□□□□□ -2.02
ZC3H4Q9UPT8 AC019176.1-201ENST00000518519 225 ntBASIC2.46□□□□□ -2.02
ZC3H4Q9UPT8 MIR4255-201ENST00000579351 72 ntBASIC2.46□□□□□ -2.02
ZC3H4Q9UPT8 MIR7-2-201ENST00000384970 110 ntBASIC2.45□□□□□ -2.02
ZC3H4Q9UPT8 MT-TF-201ENST00000387314 71 ntBASIC2.45□□□□□ -2.02
ZC3H4Q9UPT8 MT-TN-201ENST00000387400 73 ntBASIC2.45□□□□□ -2.02
ZC3H4Q9UPT8 RNU7-85P-201ENST00000458851 63 ntBASIC2.45□□□□□ -2.02
ZC3H4Q9UPT8 snoU13.25-201ENST00000458945 104 ntBASIC2.45□□□□□ -2.02
ZC3H4Q9UPT8 SNORD13-201ENST00000459299 104 ntBASIC2.45□□□□□ -2.02
ZC3H4Q9UPT8 RNU6-250P-201ENST00000516958 103 ntBASIC2.45□□□□□ -2.02
ZC3H4Q9UPT8 SNORA77B-201ENST00000578179 125 ntBASIC2.45□□□□□ -2.02
ZC3H4Q9UPT8 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
ZC3H4Q9UPT8 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
ZC3H4Q9UPT8 RNU6-654P-201ENST00000364373 107 ntBASIC2.44□□□□□ -2.02
ZC3H4Q9UPT8 Y_RNA.540-201ENST00000384638 111 ntBASIC2.44□□□□□ -2.02
ZC3H4Q9UPT8 SNORD93-201ENST00000408813 74 ntBASIC2.44□□□□□ -2.02
ZC3H4Q9UPT8 AC073261.1-201ENST00000429409 121 ntBASIC2.44□□□□□ -2.02
ZC3H4Q9UPT8 Y_RNA.648-201ENST00000459455 110 ntBASIC2.44□□□□□ -2.02
ZC3H4Q9UPT8 SNRPGP19-201ENST00000603826 189 ntBASIC2.44□□□□□ -2.02
ZC3H4Q9UPT8 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
ZC3H4Q9UPT8 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
ZC3H4Q9UPT8 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
ZC3H4Q9UPT8 RNU6-403P-201ENST00000363163 104 ntBASIC2.43□□□□□ -2.02
ZC3H4Q9UPT8 MIR516A2-201ENST00000384888 90 ntBASIC2.43□□□□□ -2.02
ZC3H4Q9UPT8 MIR516A1-201ENST00000385033 90 ntBASIC2.43□□□□□ -2.02
ZC3H4Q9UPT8 RNU6-129P-201ENST00000391022 107 ntBASIC2.43□□□□□ -2.02
ZC3H4Q9UPT8 snoU13.11-201ENST00000459219 104 ntBASIC2.43□□□□□ -2.02
ZC3H4Q9UPT8 RPL30P7-201ENST00000479312 323 ntBASIC2.43□□□□□ -2.02
ZC3H4Q9UPT8 AC090255.1-201ENST00000495779 349 ntBASIC2.43□□□□□ -2.02
ZC3H4Q9UPT8 RNU6-531P-201ENST00000516694 104 ntBASIC2.43□□□□□ -2.02
ZC3H4Q9UPT8 RNU6-243P-201ENST00000391140 107 ntBASIC2.42□□□□□ -2.02
ZC3H4Q9UPT8 MIR1185-1-201ENST00000408598 86 ntBASIC2.42□□□□□ -2.02
ZC3H4Q9UPT8 RNU6-65P-201ENST00000516332 98 ntBASIC2.42□□□□□ -2.02
ZC3H4Q9UPT8 SNORA25.16-201ENST00000516741 121 ntBASIC2.42□□□□□ -2.02
ZC3H4Q9UPT8 MIR5002-201ENST00000584713 97 ntBASIC2.42□□□□□ -2.02
ZC3H4Q9UPT8 RNU4-62P-201ENST00000410125 130 ntBASIC2.42□□□□□ -2.02
ZC3H4Q9UPT8 snoU13.9-201ENST00000458927 103 ntBASIC2.42□□□□□ -2.02
ZC3H4Q9UPT8 AL133373.1-201ENST00000497098 94 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 197 ms