Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 SNORD74.6-201ENST00000364796 70 ntBASIC-1.71□□□□□ -2.68
USE1Q9NZ43 Y_RNA.394-201ENST00000383942 103 ntBASIC-1.71□□□□□ -2.68
USE1Q9NZ43 Y_RNA.463-201ENST00000384271 102 ntBASIC-1.71□□□□□ -2.68
USE1Q9NZ43 MIR652-201ENST00000385278 98 ntBASIC-1.71□□□□□ -2.68
USE1Q9NZ43 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.71□□□□□ -2.68
USE1Q9NZ43 Y_RNA.641-201ENST00000459414 105 ntBASIC-1.71□□□□□ -2.68
USE1Q9NZ43 RNU7-106P-201ENST00000459514 67 ntBASIC-1.71□□□□□ -2.68
USE1Q9NZ43 SNORA25.1-201ENST00000362326 128 ntBASIC-1.72□□□□□ -2.68
USE1Q9NZ43 Y_RNA.52-201ENST00000362760 96 ntBASIC-1.72□□□□□ -2.68
USE1Q9NZ43 Y_RNA.448-201ENST00000384185 108 ntBASIC-1.72□□□□□ -2.68
USE1Q9NZ43 SNORD116-1-201ENST00000384335 95 ntBASIC-1.72□□□□□ -2.68
USE1Q9NZ43 MIR147A-201ENST00000385079 72 ntBASIC-1.72□□□□□ -2.68
USE1Q9NZ43 MTND4LP30-201ENST00000454092 297 ntBASIC-1.72□□□□□ -2.68
USE1Q9NZ43 RNU6-559P-201ENST00000516151 98 ntBASIC-1.72□□□□□ -2.68
USE1Q9NZ43 AL606534.2-204ENST00000635008 178 ntBASIC-1.72□□□□□ -2.68
USE1Q9NZ43 MIR382-201ENST00000637119 76 ntBASIC-1.72□□□□□ -2.68
USE1Q9NZ43 Y_RNA.98-201ENST00000363109 102 ntBASIC-1.73□□□□□ -2.69
USE1Q9NZ43 Y_RNA.488-201ENST00000384403 102 ntBASIC-1.73□□□□□ -2.69
USE1Q9NZ43 Y_RNA.496-201ENST00000384444 101 ntBASIC-1.73□□□□□ -2.69
USE1Q9NZ43 SNORA49-201ENST00000386157 136 ntBASIC-1.73□□□□□ -2.69
USE1Q9NZ43 SNORA79-201ENST00000408376 140 ntBASIC-1.73□□□□□ -2.69
USE1Q9NZ43 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC-1.73□□□□□ -2.69
USE1Q9NZ43 RNU6-453P-201ENST00000516819 85 ntBASIC-1.73□□□□□ -2.69
USE1Q9NZ43 MIR4306-201ENST00000583390 91 ntBASIC-1.73□□□□□ -2.69
USE1Q9NZ43 Y_RNA.80-201ENST00000362996 102 ntBASIC-1.74□□□□□ -2.69
USE1Q9NZ43 RNU6-973P-201ENST00000364690 107 ntBASIC-1.74□□□□□ -2.69
USE1Q9NZ43 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.74□□□□□ -2.69
USE1Q9NZ43 Y_RNA.485-201ENST00000384395 102 ntBASIC-1.74□□□□□ -2.69
USE1Q9NZ43 Y_RNA.531-201ENST00000384589 121 ntBASIC-1.74□□□□□ -2.69
USE1Q9NZ43 SNORD58B-201ENST00000607313 66 ntBASIC-1.74□□□□□ -2.69
USE1Q9NZ43 AC002553.4-201ENST00000616896 331 ntBASIC-1.74□□□□□ -2.69
USE1Q9NZ43 Y_RNA.35-201ENST00000362601 101 ntBASIC-1.75□□□□□ -2.69
USE1Q9NZ43 Y_RNA.176-201ENST00000363815 109 ntBASIC-1.75□□□□□ -2.69
USE1Q9NZ43 SNORD81.2-201ENST00000365153 76 ntBASIC-1.75□□□□□ -2.69
USE1Q9NZ43 MIR1270-201ENST00000459320 83 ntBASIC-1.75□□□□□ -2.69
USE1Q9NZ43 RNU6-287P-201ENST00000516230 98 ntBASIC-1.75□□□□□ -2.69
USE1Q9NZ43 U4.5-201ENST00000617137 123 ntBASIC-1.75□□□□□ -2.69
USE1Q9NZ43 AC104985.2-201ENST00000620598 500 ntBASIC-1.75□□□□□ -2.69
USE1Q9NZ43 AP001362.1-201ENST00000625165 124 ntBASIC-1.75□□□□□ -2.69
USE1Q9NZ43 MIR206-201ENST00000384872 86 ntBASIC-1.76□□□□□ -2.69
USE1Q9NZ43 Y_RNA.661-201ENST00000516003 99 ntBASIC-1.76□□□□□ -2.69
USE1Q9NZ43 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC-1.76□□□□□ -2.69
USE1Q9NZ43 AC007012.1-201ENST00000567192 175 ntBASIC-1.76□□□□□ -2.69
USE1Q9NZ43 MIR3115-201ENST00000577915 68 ntBASIC-1.76□□□□□ -2.69
USE1Q9NZ43 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC-1.76□□□□□ -2.69
USE1Q9NZ43 MIR5704-201ENST00000584029 77 ntBASIC-1.76□□□□□ -2.69
USE1Q9NZ43 Y_RNA.194-201ENST00000363985 102 ntBASIC-1.77□□□□□ -2.69
USE1Q9NZ43 RNU6-211P-201ENST00000384047 107 ntBASIC-1.77□□□□□ -2.69
USE1Q9NZ43 Y_RNA.785-201ENST00000384290 109 ntBASIC-1.77□□□□□ -2.69
USE1Q9NZ43 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.77□□□□□ -2.69
USE1Q9NZ43 MIR616-201ENST00000385293 97 ntBASIC-1.77□□□□□ -2.69
USE1Q9NZ43 RNU6-561P-201ENST00000516222 102 ntBASIC-1.77□□□□□ -2.69
USE1Q9NZ43 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.77□□□□□ -2.69
USE1Q9NZ43 AC037487.3-201ENST00000606668 112 ntBASIC-1.77□□□□□ -2.69
USE1Q9NZ43 AC025253.1-201ENST00000613623 543 ntBASIC-1.77□□□□□ -2.69
USE1Q9NZ43 Y_RNA.127-201ENST00000363386 109 ntBASIC-1.78□□□□□ -2.69
USE1Q9NZ43 snoU2_19.4-201ENST00000364329 80 ntBASIC-1.78□□□□□ -2.69
USE1Q9NZ43 RNU6-290P-201ENST00000365212 101 ntBASIC-1.78□□□□□ -2.69
USE1Q9NZ43 SNORD115-46-201ENST00000390982 71 ntBASIC-1.78□□□□□ -2.69
USE1Q9NZ43 MIR6854-201ENST00000614935 69 ntBASIC-1.78□□□□□ -2.69
USE1Q9NZ43 MTND4LP32-201ENST00000636111 270 ntBASIC-1.78□□□□□ -2.69
USE1Q9NZ43 MIR198-201ENST00000637333 62 ntBASIC-1.78□□□□□ -2.69
USE1Q9NZ43 RNU6-845P-201ENST00000362578 103 ntBASIC-1.79□□□□□ -2.7
USE1Q9NZ43 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.79□□□□□ -2.7
USE1Q9NZ43 Y_RNA.259-201ENST00000364619 101 ntBASIC-1.79□□□□□ -2.7
USE1Q9NZ43 Y_RNA.445-201ENST00000384168 102 ntBASIC-1.79□□□□□ -2.7
USE1Q9NZ43 MIR1277-201ENST00000408536 78 ntBASIC-1.79□□□□□ -2.7
USE1Q9NZ43 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC-1.79□□□□□ -2.7
USE1Q9NZ43 U4.1-201ENST00000620349 87 ntBASIC-1.79□□□□□ -2.7
USE1Q9NZ43 AP000770.2-201ENST00000623694 100 ntBASIC-1.79□□□□□ -2.7
USE1Q9NZ43 AC112487.2-201ENST00000637950 304 ntBASIC-1.79□□□□□ -2.7
USE1Q9NZ43 SNORD115-35-201ENST00000365122 82 ntBASIC-1.8□□□□□ -2.7
USE1Q9NZ43 RNU6-571P-201ENST00000384128 107 ntBASIC-1.8□□□□□ -2.7
USE1Q9NZ43 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.8□□□□□ -2.7
USE1Q9NZ43 AC069439.1-201ENST00000494739 167 ntBASIC-1.8□□□□□ -2.7
USE1Q9NZ43 Y_RNA.700-201ENST00000516806 100 ntBASIC-1.8□□□□□ -2.7
USE1Q9NZ43 snoU83B.1-201ENST00000517136 88 ntBASIC-1.8□□□□□ -2.7
USE1Q9NZ43 AC113139.1-201ENST00000605049 239 ntBASIC-1.8□□□□□ -2.7
USE1Q9NZ43 AC022079.1-201ENST00000621546 602 ntBASIC-1.8□□□□□ -2.7
USE1Q9NZ43 Y_RNA.166-201ENST00000363730 102 ntBASIC-1.81□□□□□ -2.7
USE1Q9NZ43 Y_RNA.215-201ENST00000364204 112 ntBASIC-1.81□□□□□ -2.7
USE1Q9NZ43 RNU1-115P-201ENST00000365329 160 ntBASIC-1.81□□□□□ -2.7
USE1Q9NZ43 RNU6-326P-201ENST00000365480 107 ntBASIC-1.81□□□□□ -2.7
USE1Q9NZ43 RNU6-1307P-201ENST00000391012 103 ntBASIC-1.81□□□□□ -2.7
USE1Q9NZ43 Y_RNA.581-201ENST00000391017 97 ntBASIC-1.81□□□□□ -2.7
USE1Q9NZ43 SNORD2-201ENST00000459163 69 ntBASIC-1.81□□□□□ -2.7
USE1Q9NZ43 RNU6-718P-201ENST00000516166 105 ntBASIC-1.81□□□□□ -2.7
USE1Q9NZ43 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-1.82□□□□□ -2.7
USE1Q9NZ43 Y_RNA.474-201ENST00000384341 102 ntBASIC-1.82□□□□□ -2.7
USE1Q9NZ43 MIR624-201ENST00000385217 97 ntBASIC-1.82□□□□□ -2.7
USE1Q9NZ43 RNU2-35P-201ENST00000516446 142 ntBASIC-1.82□□□□□ -2.7
USE1Q9NZ43 SNORD116-25-201ENST00000516517 92 ntBASIC-1.82□□□□□ -2.7
USE1Q9NZ43 MIR8068-201ENST00000618032 68 ntBASIC-1.82□□□□□ -2.7
USE1Q9NZ43 Y_RNA.328-201ENST00000365208 113 ntBASIC-1.83□□□□□ -2.7
USE1Q9NZ43 Y_RNA.342-201ENST00000365352 113 ntBASIC-1.83□□□□□ -2.7
USE1Q9NZ43 RNU6-728P-201ENST00000365375 104 ntBASIC-1.83□□□□□ -2.7
USE1Q9NZ43 MIR516A2-201ENST00000384888 90 ntBASIC-1.83□□□□□ -2.7
USE1Q9NZ43 MIR516A1-201ENST00000385033 90 ntBASIC-1.83□□□□□ -2.7
USE1Q9NZ43 MIR601-201ENST00000385256 79 ntBASIC-1.83□□□□□ -2.7
USE1Q9NZ43 RNY4P36-201ENST00000391116 96 ntBASIC-1.84□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 221.4 ms