Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC098479.1-201ENST00000609225 154 ntBASIC-0.04□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.56-201ENST00000362798 112 ntBASIC-0.05□□□□□ -2.42
CHMP4AQ9BY43 SNORD114-16-201ENST00000363044 70 ntBASIC-0.05□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.133-201ENST00000363428 110 ntBASIC-0.05□□□□□ -2.42
CHMP4AQ9BY43 SNORA20.1-201ENST00000364790 130 ntBASIC-0.05□□□□□ -2.42
CHMP4AQ9BY43 MIR610-201ENST00000385139 96 ntBASIC-0.05□□□□□ -2.42
CHMP4AQ9BY43 RNU6-918P-201ENST00000391219 106 ntBASIC-0.05□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.680-201ENST00000516441 93 ntBASIC-0.05□□□□□ -2.42
CHMP4AQ9BY43 RNU6-111P-201ENST00000517179 105 ntBASIC-0.05□□□□□ -2.42
CHMP4AQ9BY43 AC138907.4-201ENST00000570107 226 ntBASIC-0.05□□□□□ -2.42
CHMP4AQ9BY43 AC021443.1-201ENST00000604478 211 ntBASIC-0.05□□□□□ -2.42
CHMP4AQ9BY43 MIR2909-201ENST00000617113 69 ntBASIC-0.05□□□□□ -2.42
CHMP4AQ9BY43 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.05□□□□□ -2.42
CHMP4AQ9BY43 SNORD114-10-201ENST00000363409 72 ntBASIC-0.06□□□□□ -2.42
CHMP4AQ9BY43 RNU6-702P-201ENST00000364982 107 ntBASIC-0.06□□□□□ -2.42
CHMP4AQ9BY43 RNA5SP128-201ENST00000365305 116 ntBASIC-0.06□□□□□ -2.42
CHMP4AQ9BY43 MTATP6P21-201ENST00000440681 189 ntBASIC-0.06□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.06□□□□□ -2.42
CHMP4AQ9BY43 MIR499B-201ENST00000636498 73 ntBASIC-0.06□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.337-201ENST00000365312 102 ntBASIC-0.07□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.07□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.07□□□□□ -2.42
CHMP4AQ9BY43 MIR892B-201ENST00000401279 77 ntBASIC-0.07□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.793-201ENST00000411222 111 ntBASIC-0.07□□□□□ -2.42
CHMP4AQ9BY43 AC011603.4-201ENST00000611325 277 ntBASIC-0.07□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.357-201ENST00000365487 109 ntBASIC-0.08□□□□□ -2.42
CHMP4AQ9BY43 SNORA75.5-201ENST00000391291 81 ntBASIC-0.08□□□□□ -2.42
CHMP4AQ9BY43 RNU7-164P-201ENST00000459221 62 ntBASIC-0.08□□□□□ -2.42
CHMP4AQ9BY43 RPL39P34-201ENST00000477141 156 ntBASIC-0.08□□□□□ -2.42
CHMP4AQ9BY43 AC138869.1-201ENST00000568623 124 ntBASIC-0.08□□□□□ -2.42
CHMP4AQ9BY43 MIR6844-201ENST00000637122 62 ntBASIC-0.08□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.83-201ENST00000363005 113 ntBASIC-0.09□□□□□ -2.42
CHMP4AQ9BY43 RNU6-1020P-201ENST00000363684 107 ntBASIC-0.09□□□□□ -2.42
CHMP4AQ9BY43 RNY1P2-201ENST00000364820 117 ntBASIC-0.09□□□□□ -2.42
CHMP4AQ9BY43 RNU6-47P-201ENST00000383866 107 ntBASIC-0.09□□□□□ -2.42
CHMP4AQ9BY43 MIR329-2-201ENST00000385029 84 ntBASIC-0.09□□□□□ -2.42
CHMP4AQ9BY43 RNU7-104P-201ENST00000459398 79 ntBASIC-0.09□□□□□ -2.42
CHMP4AQ9BY43 RNU6-1023P-201ENST00000516137 106 ntBASIC-0.09□□□□□ -2.42
CHMP4AQ9BY43 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.09□□□□□ -2.42
CHMP4AQ9BY43 RNA5SP285-201ENST00000516619 119 ntBASIC-0.09□□□□□ -2.42
CHMP4AQ9BY43 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.09□□□□□ -2.42
CHMP4AQ9BY43 MIR548H5-201ENST00000580314 60 ntBASIC-0.09□□□□□ -2.42
CHMP4AQ9BY43 MIR4290-201ENST00000583807 95 ntBASIC-0.09□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.200-201ENST00000364018 102 ntBASIC-0.1□□□□□ -2.43
CHMP4AQ9BY43 MIR593-201ENST00000384856 100 ntBASIC-0.1□□□□□ -2.43
CHMP4AQ9BY43 U4.1-201ENST00000620349 87 ntBASIC-0.1□□□□□ -2.43
CHMP4AQ9BY43 RNU6-694P-201ENST00000364071 147 ntBASIC-0.11□□□□□ -2.43
CHMP4AQ9BY43 Y_RNA.435-201ENST00000384095 112 ntBASIC-0.11□□□□□ -2.43
CHMP4AQ9BY43 Y_RNA.447-201ENST00000384184 113 ntBASIC-0.11□□□□□ -2.43
CHMP4AQ9BY43 Y_RNA.497-201ENST00000384447 98 ntBASIC-0.11□□□□□ -2.43
CHMP4AQ9BY43 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.11□□□□□ -2.43
CHMP4AQ9BY43 RNU6-588P-201ENST00000410281 105 ntBASIC-0.11□□□□□ -2.43
CHMP4AQ9BY43 AC244505.6-201ENST00000452829 130 ntBASIC-0.11□□□□□ -2.43
CHMP4AQ9BY43 RNU6-312P-201ENST00000364629 107 ntBASIC-0.12□□□□□ -2.43
CHMP4AQ9BY43 RNU6-726P-201ENST00000364680 107 ntBASIC-0.12□□□□□ -2.43
CHMP4AQ9BY43 SNORD18B-201ENST00000365659 72 ntBASIC-0.12□□□□□ -2.43
CHMP4AQ9BY43 RNU6-429P-201ENST00000384582 108 ntBASIC-0.12□□□□□ -2.43
CHMP4AQ9BY43 IGHVII-40-1-201ENST00000517316 58 ntBASIC-0.12□□□□□ -2.43
CHMP4AQ9BY43 MIR4500-201ENST00000579472 76 ntBASIC-0.12□□□□□ -2.43
CHMP4AQ9BY43 MIR1295B-201ENST00000636144 60 ntBASIC-0.12□□□□□ -2.43
CHMP4AQ9BY43 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.13□□□□□ -2.43
CHMP4AQ9BY43 RNU4-69P-201ENST00000410677 143 ntBASIC-0.13□□□□□ -2.43
CHMP4AQ9BY43 AC108059.2-201ENST00000434626 151 ntBASIC-0.13□□□□□ -2.43
CHMP4AQ9BY43 RNU7-123P-201ENST00000515911 60 ntBASIC-0.13□□□□□ -2.43
CHMP4AQ9BY43 RNU6-1219P-201ENST00000516143 112 ntBASIC-0.13□□□□□ -2.43
CHMP4AQ9BY43 RNU7-161P-201ENST00000517289 62 ntBASIC-0.13□□□□□ -2.43
CHMP4AQ9BY43 MIR3149-201ENST00000584629 83 ntBASIC-0.13□□□□□ -2.43
CHMP4AQ9BY43 RNU7-10P-201ENST00000607194 63 ntBASIC-0.13□□□□□ -2.43
CHMP4AQ9BY43 Y_RNA.162-201ENST00000363683 102 ntBASIC-0.14□□□□□ -2.43
CHMP4AQ9BY43 Y_RNA.307-201ENST00000365022 117 ntBASIC-0.14□□□□□ -2.43
CHMP4AQ9BY43 MIR145-201ENST00000384967 88 ntBASIC-0.14□□□□□ -2.43
CHMP4AQ9BY43 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.14□□□□□ -2.43
CHMP4AQ9BY43 SNORD37.2-201ENST00000391075 66 ntBASIC-0.14□□□□□ -2.43
CHMP4AQ9BY43 RNU6-1045P-201ENST00000516321 107 ntBASIC-0.14□□□□□ -2.43
CHMP4AQ9BY43 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.15□□□□□ -2.43
CHMP4AQ9BY43 RNU6V-201ENST00000384105 107 ntBASIC-0.15□□□□□ -2.43
CHMP4AQ9BY43 Y_RNA.448-201ENST00000384185 108 ntBASIC-0.15□□□□□ -2.43
CHMP4AQ9BY43 MIR1270-201ENST00000459320 83 ntBASIC-0.15□□□□□ -2.43
CHMP4AQ9BY43 AC022559.1-201ENST00000520905 205 ntBASIC-0.15□□□□□ -2.43
CHMP4AQ9BY43 RNU1-29P-201ENST00000606574 126 ntBASIC-0.15□□□□□ -2.43
CHMP4AQ9BY43 AC067863.3-201ENST00000624172 122 ntBASIC-0.15□□□□□ -2.43
CHMP4AQ9BY43 Y_RNA.233-201ENST00000364407 101 ntBASIC-0.16□□□□□ -2.44
CHMP4AQ9BY43 MIR635-201ENST00000384830 98 ntBASIC-0.16□□□□□ -2.44
CHMP4AQ9BY43 SNORD77B-201ENST00000391112 67 ntBASIC-0.16□□□□□ -2.44
CHMP4AQ9BY43 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.16□□□□□ -2.44
CHMP4AQ9BY43 RNU2-60P-201ENST00000517290 128 ntBASIC-0.16□□□□□ -2.44
CHMP4AQ9BY43 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.17□□□□□ -2.44
CHMP4AQ9BY43 RNU6-302P-201ENST00000365249 107 ntBASIC-0.17□□□□□ -2.44
CHMP4AQ9BY43 RNU7-48P-201ENST00000458875 63 ntBASIC-0.17□□□□□ -2.44
CHMP4AQ9BY43 MIR3646-201ENST00000578301 84 ntBASIC-0.17□□□□□ -2.44
CHMP4AQ9BY43 SNORA70.25-201ENST00000612741 95 ntBASIC-0.17□□□□□ -2.44
CHMP4AQ9BY43 RNU6-196P-201ENST00000384315 107 ntBASIC-0.18□□□□□ -2.44
CHMP4AQ9BY43 MIR206-201ENST00000384872 86 ntBASIC-0.18□□□□□ -2.44
CHMP4AQ9BY43 AL162376.1-201ENST00000624117 175 ntBASIC-0.18□□□□□ -2.44
CHMP4AQ9BY43 RNU6-508P-201ENST00000363231 103 ntBASIC-0.19□□□□□ -2.44
CHMP4AQ9BY43 Y_RNA.298-201ENST00000364960 107 ntBASIC-0.19□□□□□ -2.44
CHMP4AQ9BY43 RNU6-652P-201ENST00000365488 107 ntBASIC-0.19□□□□□ -2.44
CHMP4AQ9BY43 RNU6-239P-201ENST00000390990 99 ntBASIC-0.19□□□□□ -2.44
CHMP4AQ9BY43 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.19□□□□□ -2.44
CHMP4AQ9BY43 SCARNA15.1-201ENST00000516384 125 ntBASIC-0.19□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms