Protein–RNA interactions for Protein: Q99453

PHOX2B, Paired mesoderm homeobox protein 2B, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHOX2BQ99453 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PHOX2BQ99453 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.56□□□□□ -2
PHOX2BQ99453 RNA5SP325-201ENST00000363756 130 ntBASIC2.56□□□□□ -2
PHOX2BQ99453 SNORA67.3-201ENST00000384366 140 ntBASIC2.56□□□□□ -2
PHOX2BQ99453 Y_RNA.491-201ENST00000384417 107 ntBASIC2.56□□□□□ -2
PHOX2BQ99453 SNORD63B-201ENST00000411005 70 ntBASIC2.56□□□□□ -2
PHOX2BQ99453 SNORA9.3-201ENST00000516383 129 ntBASIC2.56□□□□□ -2
PHOX2BQ99453 SNORA18.5-201ENST00000516616 101 ntBASIC2.56□□□□□ -2
PHOX2BQ99453 RNU6-807P-201ENST00000516805 107 ntBASIC2.56□□□□□ -2
PHOX2BQ99453 MIR1297-201ENST00000637311 77 ntBASIC2.56□□□□□ -2
PHOX2BQ99453 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
PHOX2BQ99453 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
PHOX2BQ99453 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
PHOX2BQ99453 DEFA7P-201ENST00000382676 285 ntBASIC2.55□□□□□ -2
PHOX2BQ99453 Y_RNA.540-201ENST00000384638 111 ntBASIC2.55□□□□□ -2
PHOX2BQ99453 MIR30A-201ENST00000385092 71 ntBASIC2.55□□□□□ -2
PHOX2BQ99453 MIR519A1-201ENST00000385257 85 ntBASIC2.55□□□□□ -2
PHOX2BQ99453 Y_RNA.588-201ENST00000391254 102 ntBASIC2.55□□□□□ -2
PHOX2BQ99453 RNU6-321P-201ENST00000410912 106 ntBASIC2.55□□□□□ -2
PHOX2BQ99453 snoU13.25-201ENST00000458945 104 ntBASIC2.55□□□□□ -2
PHOX2BQ99453 RNA5SP282-201ENST00000516355 108 ntBASIC2.55□□□□□ -2
PHOX2BQ99453 MIR3664-201ENST00000579074 99 ntBASIC2.55□□□□□ -2
PHOX2BQ99453 AC010297.1-201ENST00000623948 149 ntBASIC2.55□□□□□ -2
PHOX2BQ99453 Z82195.2-201ENST00000612348 18351 ntBASIC2.55□□□□□ -2
PHOX2BQ99453 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.55□□□□□ -2
PHOX2BQ99453 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
PHOX2BQ99453 RNU6-403P-201ENST00000363163 104 ntBASIC2.54□□□□□ -2
PHOX2BQ99453 MIR4299-201ENST00000577899 72 ntBASIC2.54□□□□□ -2
PHOX2BQ99453 MIR3064-201ENST00000581130 66 ntBASIC2.54□□□□□ -2
PHOX2BQ99453 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.54□□□□□ -2
PHOX2BQ99453 snoU13.31-201ENST00000607291 104 ntBASIC2.54□□□□□ -2
PHOX2BQ99453 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.53□□□□□ -2
PHOX2BQ99453 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
PHOX2BQ99453 Y_RNA.56-201ENST00000362798 112 ntBASIC2.53□□□□□ -2
PHOX2BQ99453 SNORD77.2-201ENST00000391045 68 ntBASIC2.53□□□□□ -2
PHOX2BQ99453 RNU6-75P-201ENST00000515944 104 ntBASIC2.53□□□□□ -2
PHOX2BQ99453 SNORA25.16-201ENST00000516741 121 ntBASIC2.53□□□□□ -2
PHOX2BQ99453 MIR4446-201ENST00000578505 67 ntBASIC2.53□□□□□ -2
PHOX2BQ99453 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.53□□□□□ -2
PHOX2BQ99453 MIR337-201ENST00000362281 93 ntBASIC2.52□□□□□ -2.01
PHOX2BQ99453 MIR1257-201ENST00000408490 117 ntBASIC2.52□□□□□ -2.01
PHOX2BQ99453 AC005908.1-201ENST00000468701 347 ntBASIC2.52□□□□□ -2.01
PHOX2BQ99453 SNORA31.11-201ENST00000516528 139 ntBASIC2.52□□□□□ -2.01
PHOX2BQ99453 RNU6-295P-201ENST00000516901 104 ntBASIC2.52□□□□□ -2.01
PHOX2BQ99453 RNU6-765P-201ENST00000516916 99 ntBASIC2.52□□□□□ -2.01
PHOX2BQ99453 MIR302D-201ENST00000362275 68 ntBASIC2.51□□□□□ -2.01
PHOX2BQ99453 RNA5SP393-201ENST00000363423 117 ntBASIC2.51□□□□□ -2.01
PHOX2BQ99453 RNU6-654P-201ENST00000364373 107 ntBASIC2.51□□□□□ -2.01
PHOX2BQ99453 SNORA17.3-201ENST00000391159 129 ntBASIC2.51□□□□□ -2.01
PHOX2BQ99453 SNORD100-201ENST00000408573 76 ntBASIC2.51□□□□□ -2.01
PHOX2BQ99453 RNU7-106P-201ENST00000459514 67 ntBASIC2.51□□□□□ -2.01
PHOX2BQ99453 RNU4ATAC9P-201ENST00000517146 126 ntBASIC2.51□□□□□ -2.01
PHOX2BQ99453 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
PHOX2BQ99453 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.51□□□□□ -2.01
PHOX2BQ99453 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
PHOX2BQ99453 MIR6073-201ENST00000352083 89 ntBASIC2.5□□□□□ -2.01
PHOX2BQ99453 SNORA16B-201ENST00000364674 135 ntBASIC2.5□□□□□ -2.01
PHOX2BQ99453 RNA5SP292-201ENST00000390974 118 ntBASIC2.5□□□□□ -2.01
PHOX2BQ99453 RNU7-185P-201ENST00000459215 60 ntBASIC2.5□□□□□ -2.01
PHOX2BQ99453 MIR514B-201ENST00000516774 80 ntBASIC2.5□□□□□ -2.01
PHOX2BQ99453 uc_338.6-201ENST00000613544 171 ntBASIC2.5□□□□□ -2.01
PHOX2BQ99453 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.49□□□□□ -2.01
PHOX2BQ99453 RNU6-161P-201ENST00000363051 106 ntBASIC2.49□□□□□ -2.01
PHOX2BQ99453 SNORD1A-201ENST00000364968 72 ntBASIC2.49□□□□□ -2.01
PHOX2BQ99453 RNU6-411P-201ENST00000384451 107 ntBASIC2.49□□□□□ -2.01
PHOX2BQ99453 Y_RNA.536-201ENST00000384621 113 ntBASIC2.49□□□□□ -2.01
PHOX2BQ99453 AC015818.7-201ENST00000428754 109 ntBASIC2.49□□□□□ -2.01
PHOX2BQ99453 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.49□□□□□ -2.01
PHOX2BQ99453 RNU6-871P-201ENST00000516122 100 ntBASIC2.49□□□□□ -2.01
PHOX2BQ99453 MIR3937-201ENST00000580135 106 ntBASIC2.49□□□□□ -2.01
PHOX2BQ99453 MIR6873-201ENST00000622788 63 ntBASIC2.49□□□□□ -2.01
PHOX2BQ99453 VPS35-212ENST00000640313 141 ntTSL 5 BASIC2.49□□□□□ -2.01
PHOX2BQ99453 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.48□□□□□ -2.01
PHOX2BQ99453 AC023934.1-201ENST00000574529 2389 ntBASIC2.48□□□□□ -2.01
PHOX2BQ99453 RNU6-1260P-201ENST00000362944 107 ntBASIC2.48□□□□□ -2.01
PHOX2BQ99453 RNY4P3-201ENST00000365254 95 ntBASIC2.48□□□□□ -2.01
PHOX2BQ99453 RNA5SP210-201ENST00000391034 120 ntBASIC2.48□□□□□ -2.01
PHOX2BQ99453 RNA5SP181-201ENST00000410246 98 ntBASIC2.48□□□□□ -2.01
PHOX2BQ99453 RNA5SP480-201ENST00000516840 109 ntBASIC2.48□□□□□ -2.01
PHOX2BQ99453 AL049779.4-201ENST00000604500 156 ntBASIC2.48□□□□□ -2.01
PHOX2BQ99453 AC103810.8-201ENST00000607347 118 ntBASIC2.48□□□□□ -2.01
PHOX2BQ99453 MIR6082-201ENST00000613604 109 ntBASIC2.48□□□□□ -2.01
PHOX2BQ99453 FO624990.1-201ENST00000636373 85 ntBASIC2.48□□□□□ -2.01
PHOX2BQ99453 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
PHOX2BQ99453 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.48□□□□□ -2.01
PHOX2BQ99453 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
PHOX2BQ99453 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
PHOX2BQ99453 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
PHOX2BQ99453 SNORD113.3-201ENST00000364630 78 ntBASIC2.47□□□□□ -2.01
PHOX2BQ99453 U8.13-201ENST00000390842 128 ntBASIC2.47□□□□□ -2.01
PHOX2BQ99453 RNU6-1108P-201ENST00000516308 104 ntBASIC2.47□□□□□ -2.01
PHOX2BQ99453 MIR3198-2-201ENST00000577868 80 ntBASIC2.47□□□□□ -2.01
PHOX2BQ99453 MIR3605-201ENST00000583214 100 ntBASIC2.47□□□□□ -2.01
PHOX2BQ99453 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
PHOX2BQ99453 RNU6-208P-201ENST00000362431 107 ntBASIC2.46□□□□□ -2.02
PHOX2BQ99453 Y_RNA.224-201ENST00000364308 111 ntBASIC2.46□□□□□ -2.02
PHOX2BQ99453 RNU6-132P-201ENST00000383863 107 ntBASIC2.46□□□□□ -2.02
PHOX2BQ99453 MIR17-201ENST00000385012 84 ntBASIC2.46□□□□□ -2.02
PHOX2BQ99453 SNORA26.9-201ENST00000391322 122 ntBASIC2.46□□□□□ -2.02
PHOX2BQ99453 RNU6ATAC6P-201ENST00000408132 126 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms