Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNU6-1100P-201ENST00000410691 104 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-860P-201ENST00000410860 104 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-1217P-201ENST00000411276 104 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-785P-201ENST00000411324 104 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 SNORD13-201ENST00000459299 104 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-947P-201ENST00000516264 106 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 AC141846.1-201ENST00000568348 142 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-90P-201ENST00000606352 106 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 U6.90-201ENST00000614007 104 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 U6.70-201ENST00000620287 104 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 MIR548BB-201ENST00000626714 66 ntBASIC1.67□□□□□ -2.14
CLIP3Q96DZ5 RNU6-1125P-201ENST00000363601 107 ntBASIC1.66□□□□□ -2.14
CLIP3Q96DZ5 SNORD38B-201ENST00000384690 67 ntBASIC1.66□□□□□ -2.14
CLIP3Q96DZ5 Y_RNA.609-201ENST00000410669 89 ntBASIC1.66□□□□□ -2.14
CLIP3Q96DZ5 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.66□□□□□ -2.14
CLIP3Q96DZ5 snoU13.25-201ENST00000458945 104 ntBASIC1.66□□□□□ -2.14
CLIP3Q96DZ5 RNU1-98P-201ENST00000458992 160 ntBASIC1.66□□□□□ -2.14
CLIP3Q96DZ5 MIR3192-201ENST00000584920 77 ntBASIC1.66□□□□□ -2.14
CLIP3Q96DZ5 AP000942.3-201ENST00000603702 160 ntBASIC1.66□□□□□ -2.14
CLIP3Q96DZ5 PRELID3BP2-201ENST00000605362 201 ntBASIC1.66□□□□□ -2.14
CLIP3Q96DZ5 SNORD38B-202ENST00000625943 69 ntBASIC1.66□□□□□ -2.14
CLIP3Q96DZ5 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.66□□□□□ -2.14
CLIP3Q96DZ5 Y_RNA.98-201ENST00000363109 102 ntBASIC1.65□□□□□ -2.15
CLIP3Q96DZ5 SNORD115-27-201ENST00000364430 82 ntBASIC1.65□□□□□ -2.15
CLIP3Q96DZ5 Y_RNA.244-201ENST00000364484 109 ntBASIC1.65□□□□□ -2.15
CLIP3Q96DZ5 Y_RNA.426-201ENST00000384068 113 ntBASIC1.65□□□□□ -2.15
CLIP3Q96DZ5 Y_RNA.437-201ENST00000384113 113 ntBASIC1.65□□□□□ -2.15
CLIP3Q96DZ5 SNORA2B-201ENST00000384583 137 ntBASIC1.65□□□□□ -2.15
CLIP3Q96DZ5 AL662814.1-201ENST00000617364 121 ntBASIC1.65□□□□□ -2.15
CLIP3Q96DZ5 AC012676.2-201ENST00000619258 186 ntBASIC1.65□□□□□ -2.15
CLIP3Q96DZ5 HSBP1P2-201ENST00000299671 229 ntBASIC1.64□□□□□ -2.15
CLIP3Q96DZ5 Y_RNA.611-201ENST00000410682 108 ntBASIC1.64□□□□□ -2.15
CLIP3Q96DZ5 RNU6-857P-201ENST00000515893 110 ntBASIC1.64□□□□□ -2.15
CLIP3Q96DZ5 AL513043.2-201ENST00000573941 143 ntBASIC1.64□□□□□ -2.15
CLIP3Q96DZ5 AP001362.1-201ENST00000625165 124 ntBASIC1.64□□□□□ -2.15
CLIP3Q96DZ5 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.63□□□□□ -2.15
CLIP3Q96DZ5 MIR181B2-201ENST00000385004 89 ntBASIC1.63□□□□□ -2.15
CLIP3Q96DZ5 MIR563-201ENST00000385080 79 ntBASIC1.63□□□□□ -2.15
CLIP3Q96DZ5 AL603825.1-201ENST00000438481 80 ntBASIC1.63□□□□□ -2.15
CLIP3Q96DZ5 SPINT5P-201ENST00000448174 155 ntBASIC1.63□□□□□ -2.15
CLIP3Q96DZ5 snoU13.2-201ENST00000459201 104 ntBASIC1.63□□□□□ -2.15
CLIP3Q96DZ5 AL096861.1-201ENST00000610899 123 ntBASIC1.63□□□□□ -2.15
CLIP3Q96DZ5 RNA5SP133-201ENST00000363368 119 ntBASIC1.62□□□□□ -2.15
CLIP3Q96DZ5 Y_RNA.221-201ENST00000364248 96 ntBASIC1.62□□□□□ -2.15
CLIP3Q96DZ5 RNU6-949P-201ENST00000384040 107 ntBASIC1.62□□□□□ -2.15
CLIP3Q96DZ5 AC108667.1-201ENST00000428618 249 ntBASIC1.62□□□□□ -2.15
CLIP3Q96DZ5 AL161932.1-201ENST00000437408 146 ntBASIC1.62□□□□□ -2.15
CLIP3Q96DZ5 RNA5SP48-201ENST00000363969 126 ntBASIC1.61□□□□□ -2.15
CLIP3Q96DZ5 RNY1P2-201ENST00000364820 117 ntBASIC1.61□□□□□ -2.15
CLIP3Q96DZ5 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
CLIP3Q96DZ5 RNU6-1054P-201ENST00000411293 104 ntBASIC1.61□□□□□ -2.15
CLIP3Q96DZ5 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.61□□□□□ -2.15
CLIP3Q96DZ5 AP003716.2-201ENST00000528260 108 ntBASIC1.61□□□□□ -2.15
CLIP3Q96DZ5 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.61□□□□□ -2.15
CLIP3Q96DZ5 MIR6740-201ENST00000618268 113 ntBASIC1.61□□□□□ -2.15
CLIP3Q96DZ5 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.61□□□□□ -2.15
CLIP3Q96DZ5 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.61□□□□□ -2.15
CLIP3Q96DZ5 Y_RNA.338-201ENST00000365320 114 ntBASIC1.6□□□□□ -2.15
CLIP3Q96DZ5 RNU6-524P-201ENST00000384270 107 ntBASIC1.6□□□□□ -2.15
CLIP3Q96DZ5 SNORD38.2-201ENST00000384470 69 ntBASIC1.6□□□□□ -2.15
CLIP3Q96DZ5 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.6□□□□□ -2.15
CLIP3Q96DZ5 Y_RNA.607-201ENST00000410597 98 ntBASIC1.6□□□□□ -2.15
CLIP3Q96DZ5 AC087499.7-201ENST00000441958 109 ntBASIC1.6□□□□□ -2.15
CLIP3Q96DZ5 AC138749.4-201ENST00000563970 127 ntBASIC1.6□□□□□ -2.15
CLIP3Q96DZ5 AP000648.3-201ENST00000623539 4507 ntBASIC1.6□□□□□ -2.15
CLIP3Q96DZ5 MIR30D-201ENST00000362283 70 ntBASIC1.59□□□□□ -2.15
CLIP3Q96DZ5 Y_RNA.94-201ENST00000363068 106 ntBASIC1.59□□□□□ -2.15
CLIP3Q96DZ5 Y_RNA.316-201ENST00000365118 111 ntBASIC1.59□□□□□ -2.15
CLIP3Q96DZ5 RNU6-652P-201ENST00000365488 107 ntBASIC1.59□□□□□ -2.15
CLIP3Q96DZ5 SNORA17.3-201ENST00000391159 129 ntBASIC1.59□□□□□ -2.15
CLIP3Q96DZ5 RNA5SP237-201ENST00000410414 113 ntBASIC1.59□□□□□ -2.15
CLIP3Q96DZ5 RNU4-83P-201ENST00000410863 133 ntBASIC1.59□□□□□ -2.15
CLIP3Q96DZ5 SNRPGP12-201ENST00000449481 213 ntBASIC1.59□□□□□ -2.15
CLIP3Q96DZ5 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.59□□□□□ -2.15
CLIP3Q96DZ5 MTND5P40-201ENST00000559945 246 ntBASIC1.59□□□□□ -2.15
CLIP3Q96DZ5 AC133485.1-201ENST00000567176 124 ntBASIC1.59□□□□□ -2.15
CLIP3Q96DZ5 AC090897.1-201ENST00000580909 226 ntBASIC1.59□□□□□ -2.15
CLIP3Q96DZ5 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.59□□□□□ -2.16
CLIP3Q96DZ5 SNORD26-201ENST00000384147 75 ntBASIC1.58□□□□□ -2.16
CLIP3Q96DZ5 RNU6-480P-201ENST00000384332 107 ntBASIC1.58□□□□□ -2.16
CLIP3Q96DZ5 RNU6-24P-201ENST00000384440 107 ntBASIC1.58□□□□□ -2.16
CLIP3Q96DZ5 MIR588-201ENST00000384900 83 ntBASIC1.58□□□□□ -2.16
CLIP3Q96DZ5 SNORA67.5-201ENST00000391036 107 ntBASIC1.58□□□□□ -2.16
CLIP3Q96DZ5 AL133373.1-201ENST00000497098 94 ntBASIC1.58□□□□□ -2.16
CLIP3Q96DZ5 SNORA31.2-201ENST00000516019 134 ntBASIC1.58□□□□□ -2.16
CLIP3Q96DZ5 uc_338.6-201ENST00000613544 171 ntBASIC1.58□□□□□ -2.16
CLIP3Q96DZ5 MIR378A-201ENST00000362177 66 ntBASIC1.57□□□□□ -2.16
CLIP3Q96DZ5 SNORA25.3-201ENST00000363205 127 ntBASIC1.57□□□□□ -2.16
CLIP3Q96DZ5 Y_RNA.168-201ENST00000363740 102 ntBASIC1.57□□□□□ -2.16
CLIP3Q96DZ5 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
CLIP3Q96DZ5 RPS29P23-201ENST00000458635 123 ntBASIC1.57□□□□□ -2.16
CLIP3Q96DZ5 AC048334.1-201ENST00000477975 159 ntBASIC1.57□□□□□ -2.16
CLIP3Q96DZ5 SNORD53B-201ENST00000577887 78 ntBASIC1.57□□□□□ -2.16
CLIP3Q96DZ5 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.57□□□□□ -2.16
CLIP3Q96DZ5 AL161722.3-201ENST00000605789 2983 ntBASIC1.57□□□□□ -2.16
CLIP3Q96DZ5 SNORD48-201ENST00000364953 64 ntBASIC1.56□□□□□ -2.16
CLIP3Q96DZ5 AC008163.1-202ENST00000636004 2889 ntBASIC1.56□□□□□ -2.16
CLIP3Q96DZ5 RNU6-396P-201ENST00000365369 105 ntBASIC1.55□□□□□ -2.16
CLIP3Q96DZ5 MIR519C-201ENST00000385053 87 ntBASIC1.55□□□□□ -2.16
CLIP3Q96DZ5 MIR1185-1-201ENST00000408598 86 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms