Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
UBE3DQ7Z6J8 RNU6-24P-201ENST00000384440 107 ntBASIC1.81□□□□□ -2.12
UBE3DQ7Z6J8 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
UBE3DQ7Z6J8 RNU4-83P-201ENST00000410863 133 ntBASIC1.81□□□□□ -2.12
UBE3DQ7Z6J8 AC087499.7-201ENST00000441958 109 ntBASIC1.81□□□□□ -2.12
UBE3DQ7Z6J8 AC019176.1-201ENST00000518519 225 ntBASIC1.81□□□□□ -2.12
UBE3DQ7Z6J8 RNU7-10P-201ENST00000607194 63 ntBASIC1.81□□□□□ -2.12
UBE3DQ7Z6J8 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 SNORD114-1-201ENST00000362705 72 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 RNU6-654P-201ENST00000364373 107 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 RNU1-36P-201ENST00000365130 165 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 SNORA72.6-201ENST00000384520 129 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 RNU1-78P-201ENST00000391248 165 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 RNU6-1254P-201ENST00000391266 104 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 SNORD93-201ENST00000408813 74 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 SNORD4B-201ENST00000459083 72 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 RN7SL429P-201ENST00000479090 223 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 RN7SL489P-201ENST00000486185 223 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 RN7SL327P-201ENST00000488659 223 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 AC008834.1-201ENST00000511612 175 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 RNU6-165P-201ENST00000517170 99 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 AC019288.1-201ENST00000557918 224 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 MIR4491-201ENST00000581087 68 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 uc_338.6-201ENST00000613544 171 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 RN7SL853P-201ENST00000617250 223 ntBASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
UBE3DQ7Z6J8 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.79□□□□□ -2.12
UBE3DQ7Z6J8 SNORD115-27-201ENST00000364430 82 ntBASIC1.79□□□□□ -2.12
UBE3DQ7Z6J8 Y_RNA.588-201ENST00000391254 102 ntBASIC1.79□□□□□ -2.12
UBE3DQ7Z6J8 BX276092.1-201ENST00000427368 251 ntBASIC1.79□□□□□ -2.12
UBE3DQ7Z6J8 RNU6-857P-201ENST00000515893 110 ntBASIC1.79□□□□□ -2.12
UBE3DQ7Z6J8 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
UBE3DQ7Z6J8 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.79□□□□□ -2.12
UBE3DQ7Z6J8 Y_RNA.313-201ENST00000365095 103 ntBASIC1.78□□□□□ -2.12
UBE3DQ7Z6J8 AC003989.2-201ENST00000440224 169 ntBASIC1.78□□□□□ -2.12
UBE3DQ7Z6J8 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.78□□□□□ -2.12
UBE3DQ7Z6J8 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
UBE3DQ7Z6J8 SNORD113.3-201ENST00000364630 78 ntBASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 Y_RNA.316-201ENST00000365118 111 ntBASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 RNU6-524P-201ENST00000384270 107 ntBASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 MIR519A1-201ENST00000385257 85 ntBASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 RNU6-243P-201ENST00000391140 107 ntBASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 SUMO2P12-201ENST00000405924 140 ntBASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 MIR1257-201ENST00000408490 117 ntBASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 AC140658.3-201ENST00000567603 271 ntBASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 AC012493.3-201ENST00000604494 112 ntBASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.77□□□□□ -2.13
UBE3DQ7Z6J8 SNORD36A-201ENST00000362874 73 ntBASIC1.76□□□□□ -2.13
UBE3DQ7Z6J8 RNA5SP489-201ENST00000410986 109 ntBASIC1.76□□□□□ -2.13
UBE3DQ7Z6J8 HMGN2P19-201ENST00000425149 265 ntBASIC1.76□□□□□ -2.13
UBE3DQ7Z6J8 RNU6-531P-201ENST00000516694 104 ntBASIC1.76□□□□□ -2.13
UBE3DQ7Z6J8 RNU6-765P-201ENST00000516916 99 ntBASIC1.76□□□□□ -2.13
UBE3DQ7Z6J8 MIR548H5-201ENST00000580314 60 ntBASIC1.76□□□□□ -2.13
UBE3DQ7Z6J8 Y_RNA.244-201ENST00000364484 109 ntBASIC1.75□□□□□ -2.13
UBE3DQ7Z6J8 RNU6-652P-201ENST00000365488 107 ntBASIC1.75□□□□□ -2.13
UBE3DQ7Z6J8 MIR9-3-201ENST00000385084 90 ntBASIC1.75□□□□□ -2.13
UBE3DQ7Z6J8 MIR934-201ENST00000401241 83 ntBASIC1.75□□□□□ -2.13
UBE3DQ7Z6J8 RNA5SP95-201ENST00000410319 137 ntBASIC1.75□□□□□ -2.13
UBE3DQ7Z6J8 RNU7-185P-201ENST00000459215 60 ntBASIC1.75□□□□□ -2.13
UBE3DQ7Z6J8 RPL23AP42-201ENST00000471152 471 ntBASIC1.75□□□□□ -2.13
UBE3DQ7Z6J8 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.75□□□□□ -2.13
UBE3DQ7Z6J8 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.75□□□□□ -2.13
UBE3DQ7Z6J8 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
UBE3DQ7Z6J8 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
UBE3DQ7Z6J8 SNORA16.1-201ENST00000364597 132 ntBASIC1.74□□□□□ -2.13
UBE3DQ7Z6J8 SNORD111-201ENST00000408139 94 ntBASIC1.74□□□□□ -2.13
UBE3DQ7Z6J8 RNU7-85P-201ENST00000458851 63 ntBASIC1.74□□□□□ -2.13
UBE3DQ7Z6J8 RNA5SP182-201ENST00000516064 82 ntBASIC1.74□□□□□ -2.13
UBE3DQ7Z6J8 SNORA25.16-201ENST00000516741 121 ntBASIC1.74□□□□□ -2.13
UBE3DQ7Z6J8 RN7SKP88-201ENST00000516847 250 ntBASIC1.74□□□□□ -2.13
UBE3DQ7Z6J8 7SK.8-201ENST00000612110 250 ntBASIC1.74□□□□□ -2.13
UBE3DQ7Z6J8 7SK.11-201ENST00000615477 250 ntBASIC1.74□□□□□ -2.13
UBE3DQ7Z6J8 7SK.13-201ENST00000622040 250 ntBASIC1.74□□□□□ -2.13
UBE3DQ7Z6J8 AC023934.1-201ENST00000574529 2389 ntBASIC1.73□□□□□ -2.13
UBE3DQ7Z6J8 MIR101-2-201ENST00000362195 79 ntBASIC1.73□□□□□ -2.13
UBE3DQ7Z6J8 RNU6-315P-201ENST00000362666 107 ntBASIC1.73□□□□□ -2.13
UBE3DQ7Z6J8 RNU6-1296P-201ENST00000383879 107 ntBASIC1.73□□□□□ -2.13
UBE3DQ7Z6J8 U8.13-201ENST00000390842 128 ntBASIC1.73□□□□□ -2.13
UBE3DQ7Z6J8 RNU6-466P-201ENST00000391224 103 ntBASIC1.73□□□□□ -2.13
UBE3DQ7Z6J8 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.73□□□□□ -2.13
UBE3DQ7Z6J8 RNU6-65P-201ENST00000516332 98 ntBASIC1.73□□□□□ -2.13
UBE3DQ7Z6J8 RNU6-902P-201ENST00000517212 91 ntBASIC1.73□□□□□ -2.13
UBE3DQ7Z6J8 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.73□□□□□ -2.13
UBE3DQ7Z6J8 Y_RNA.56-201ENST00000362798 112 ntBASIC1.72□□□□□ -2.13
UBE3DQ7Z6J8 RNU6-403P-201ENST00000363163 104 ntBASIC1.72□□□□□ -2.13
UBE3DQ7Z6J8 MIR516A2-201ENST00000384888 90 ntBASIC1.72□□□□□ -2.13
UBE3DQ7Z6J8 MIR516A1-201ENST00000385033 90 ntBASIC1.72□□□□□ -2.13
UBE3DQ7Z6J8 SNORA40.18-201ENST00000391200 128 ntBASIC1.72□□□□□ -2.13
UBE3DQ7Z6J8 RPS27P16-201ENST00000425758 201 ntBASIC1.72□□□□□ -2.13
UBE3DQ7Z6J8 snoU13.15-201ENST00000459407 104 ntBASIC1.72□□□□□ -2.13
UBE3DQ7Z6J8 SNORD92-201ENST00000585078 85 ntBASIC1.72□□□□□ -2.13
UBE3DQ7Z6J8 MIR6082-201ENST00000613604 109 ntBASIC1.72□□□□□ -2.13
UBE3DQ7Z6J8 MIR635-201ENST00000384830 98 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 194.5 ms