Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 MIR892B-201ENST00000401279 77 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 MIR1302-3-201ENST00000408128 138 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 RNU7-48P-201ENST00000458875 63 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 RN7SKP12-201ENST00000516275 143 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 Y_RNA.720-201ENST00000517166 92 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 MIR548H5-201ENST00000580314 60 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 MIR548AD-201ENST00000584780 82 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 AC009779.6-201ENST00000603972 165 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 RNU1-29P-201ENST00000606574 126 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 AC098479.1-201ENST00000609225 154 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 SNORD115-2-201ENST00000362842 82 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 RNU6-309P-201ENST00000364573 106 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 SNORD115-20-201ENST00000365099 82 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 MIR4500-201ENST00000579472 76 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 MIR6086-201ENST00000638065 55 ntBASIC-0.03□□□□□ -2.41
SCN1AP35498 RNU6-187P-201ENST00000384139 106 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 MIR593-201ENST00000384856 100 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 HAR1A.1-201ENST00000459583 118 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 RNU6-240P-201ENST00000516098 97 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 RNU6-1023P-201ENST00000516137 106 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 Y_RNA.668-201ENST00000516233 93 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 MIR3128-201ENST00000581957 66 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 MIR3149-201ENST00000584629 83 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 MIR6828-201ENST00000636181 60 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 Y_RNA.83-201ENST00000363005 113 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 RNY1P2-201ENST00000364820 117 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 RNU6-918P-201ENST00000391219 106 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 AC069271.1-201ENST00000445577 156 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 DNAJC19P2-201ENST00000593340 302 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 RNU7-10P-201ENST00000607194 63 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 U4.1-201ENST00000620349 87 ntBASIC-0.04□□□□□ -2.42
SCN1AP35498 Y_RNA.459-201ENST00000384251 102 ntBASIC-0.05□□□□□ -2.42
SCN1AP35498 RNU6-35P-201ENST00000384530 107 ntBASIC-0.05□□□□□ -2.42
SCN1AP35498 MIR501-201ENST00000390204 84 ntBASIC-0.05□□□□□ -2.42
SCN1AP35498 RNU6-588P-201ENST00000410281 105 ntBASIC-0.05□□□□□ -2.42
SCN1AP35498 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.05□□□□□ -2.42
SCN1AP35498 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.05□□□□□ -2.42
SCN1AP35498 MIR4743-201ENST00000584576 69 ntBASIC-0.05□□□□□ -2.42
SCN1AP35498 Y_RNA.49-201ENST00000362714 112 ntBASIC-0.06□□□□□ -2.42
SCN1AP35498 Y_RNA.288-201ENST00000364854 92 ntBASIC-0.06□□□□□ -2.42
SCN1AP35498 TRAJ51-201ENST00000504127 63 ntBASIC-0.06□□□□□ -2.42
SCN1AP35498 MIR4802-201ENST00000581881 80 ntBASIC-0.06□□□□□ -2.42
SCN1AP35498 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.06□□□□□ -2.42
SCN1AP35498 Y_RNA.20-201ENST00000362479 113 ntBASIC-0.06□□□□□ -2.42
SCN1AP35498 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.06□□□□□ -2.42
SCN1AP35498 SNORA75.1-201ENST00000391130 148 ntBASIC-0.06□□□□□ -2.42
SCN1AP35498 MTND3P2-201ENST00000438452 342 ntBASIC-0.06□□□□□ -2.42
SCN1AP35498 MTATP8P1-201ENST00000467115 207 ntBASIC-0.06□□□□□ -2.42
SCN1AP35498 RNU6-694P-201ENST00000364071 147 ntBASIC-0.07□□□□□ -2.42
SCN1AP35498 RNU6-929P-201ENST00000384429 107 ntBASIC-0.07□□□□□ -2.42
SCN1AP35498 MIR145-201ENST00000384967 88 ntBASIC-0.07□□□□□ -2.42
SCN1AP35498 RNU6-269P-201ENST00000391077 97 ntBASIC-0.07□□□□□ -2.42
SCN1AP35498 AC097635.1-201ENST00000450678 155 ntBASIC-0.07□□□□□ -2.42
SCN1AP35498 SCARNA15.1-201ENST00000516384 125 ntBASIC-0.07□□□□□ -2.42
SCN1AP35498 RNU7-137P-201ENST00000516788 62 ntBASIC-0.07□□□□□ -2.42
SCN1AP35498 AL137067.1-201ENST00000615933 120 ntBASIC-0.07□□□□□ -2.42
SCN1AP35498 Y_RNA.149-201ENST00000363558 117 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 Y_RNA.200-201ENST00000364018 102 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 PCNPP3-201ENST00000393579 471 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 RNY4P20-201ENST00000516678 93 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.08□□□□□ -2.42
SCN1AP35498 AP002392.1-201ENST00000537692 208 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 Y_RNA.162-201ENST00000363683 102 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 RNA5SP245-201ENST00000364239 121 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 RNU6-275P-201ENST00000364910 107 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 RNU6-46P-201ENST00000383860 107 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 Y_RNA.556-201ENST00000384677 113 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 MIR617-201ENST00000385030 97 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 MTND2P23-201ENST00000422990 651 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 AC141273.2-201ENST00000618989 130 ntBASIC-0.08□□□□□ -2.42
SCN1AP35498 Y_RNA.8-201ENST00000362353 102 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 RNU6-508P-201ENST00000363231 103 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 RNU4-84P-201ENST00000364200 139 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 SNORA25.7-201ENST00000364375 127 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 RNU6-815P-201ENST00000384080 113 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 Y_RNA.447-201ENST00000384184 113 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 MIR568-201ENST00000385036 95 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 HMGN2P22-201ENST00000427588 175 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 RPL39P34-201ENST00000477141 156 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 RNA5SP395-201ENST00000516567 118 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 MIR4677-201ENST00000584153 80 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 AP001180.6-201ENST00000584918 159 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 Y_RNA.56-201ENST00000362798 112 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 RNU6-978P-201ENST00000364371 103 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 Y_RNA.435-201ENST00000384095 112 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 MIR516B1-201ENST00000385211 90 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 MIR548AE2-201ENST00000583456 67 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 MIR4719-201ENST00000585233 84 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 AL359881.1-201ENST00000602916 267 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 MIR8066-201ENST00000617280 78 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 MIR1295B-201ENST00000636144 60 ntBASIC-0.09□□□□□ -2.42
SCN1AP35498 RNA5SP368-201ENST00000364298 116 ntBASIC-0.1□□□□□ -2.43
SCN1AP35498 SNORA20.1-201ENST00000364790 130 ntBASIC-0.1□□□□□ -2.43
SCN1AP35498 RNU6-47P-201ENST00000383866 107 ntBASIC-0.1□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 223.4 ms