Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 RNY4P3-201ENST00000365254 95 ntBASIC-1.23□□□□□ -2.61
LIMS3P0CW19 RNU6-1289P-201ENST00000384431 106 ntBASIC-1.23□□□□□ -2.61
LIMS3P0CW19 AL589823.1-201ENST00000429577 183 ntBASIC-1.23□□□□□ -2.61
LIMS3P0CW19 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-1.23□□□□□ -2.61
LIMS3P0CW19 SNORA13-201ENST00000458790 133 ntBASIC-1.23□□□□□ -2.61
LIMS3P0CW19 RNU6-561P-201ENST00000516222 102 ntBASIC-1.23□□□□□ -2.61
LIMS3P0CW19 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-1.23□□□□□ -2.61
LIMS3P0CW19 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-1.23□□□□□ -2.61
LIMS3P0CW19 MIR1302-1-201ENST00000637932 143 ntBASIC-1.23□□□□□ -2.61
LIMS3P0CW19 MIR20A-201ENST00000362279 71 ntBASIC-1.24□□□□□ -2.61
LIMS3P0CW19 snoU2_19.2-201ENST00000363024 80 ntBASIC-1.24□□□□□ -2.61
LIMS3P0CW19 SNORD83B-201ENST00000386745 93 ntBASIC-1.24□□□□□ -2.61
LIMS3P0CW19 RNU6-121P-201ENST00000410525 99 ntBASIC-1.24□□□□□ -2.61
LIMS3P0CW19 RNU6-881P-201ENST00000516813 102 ntBASIC-1.24□□□□□ -2.61
LIMS3P0CW19 AP001362.1-201ENST00000625165 124 ntBASIC-1.24□□□□□ -2.61
LIMS3P0CW19 RNU6-978P-201ENST00000364371 103 ntBASIC-1.25□□□□□ -2.61
LIMS3P0CW19 Y_RNA.448-201ENST00000384185 108 ntBASIC-1.25□□□□□ -2.61
LIMS3P0CW19 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.25□□□□□ -2.61
LIMS3P0CW19 AP000676.1-201ENST00000533307 52 ntBASIC-1.25□□□□□ -2.61
LIMS3P0CW19 RNU4-36P-201ENST00000364294 144 ntBASIC-1.26□□□□□ -2.61
LIMS3P0CW19 Y_RNA.275-201ENST00000364726 110 ntBASIC-1.26□□□□□ -2.61
LIMS3P0CW19 SNORD56B-201ENST00000384713 71 ntBASIC-1.26□□□□□ -2.61
LIMS3P0CW19 MIR206-201ENST00000384872 86 ntBASIC-1.26□□□□□ -2.61
LIMS3P0CW19 Y_RNA.632-201ENST00000459189 102 ntBASIC-1.26□□□□□ -2.61
LIMS3P0CW19 SNORD19B-201ENST00000459623 84 ntBASIC-1.26□□□□□ -2.61
LIMS3P0CW19 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-1.26□□□□□ -2.61
LIMS3P0CW19 Y_RNA.433-201ENST00000384089 102 ntBASIC-1.27□□□□□ -2.61
LIMS3P0CW19 AC098614.3-201ENST00000438957 440 ntBASIC-1.27□□□□□ -2.61
LIMS3P0CW19 SPINT5P-201ENST00000448174 155 ntBASIC-1.27□□□□□ -2.61
LIMS3P0CW19 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.27□□□□□ -2.61
LIMS3P0CW19 RNU5B-6P-201ENST00000516765 68 ntBASIC-1.27□□□□□ -2.61
LIMS3P0CW19 MIR6851-201ENST00000617060 67 ntBASIC-1.27□□□□□ -2.61
LIMS3P0CW19 Y_RNA.142-201ENST00000363491 102 ntBASIC-1.28□□□□□ -2.61
LIMS3P0CW19 RNU6-571P-201ENST00000384128 107 ntBASIC-1.28□□□□□ -2.61
LIMS3P0CW19 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.28□□□□□ -2.61
LIMS3P0CW19 SNORD116-4-201ENST00000384733 96 ntBASIC-1.28□□□□□ -2.61
LIMS3P0CW19 SERF1AP1-201ENST00000514575 187 ntBASIC-1.28□□□□□ -2.61
LIMS3P0CW19 SNORA40.15-201ENST00000516884 107 ntBASIC-1.28□□□□□ -2.61
LIMS3P0CW19 MIR4280-201ENST00000582178 76 ntBASIC-1.28□□□□□ -2.61
LIMS3P0CW19 Y_RNA.70-201ENST00000362886 110 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 Y_RNA.127-201ENST00000363386 109 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 Y_RNA.357-201ENST00000365487 109 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 MT-TY-201ENST00000387409 66 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 RNU6-381P-201ENST00000391259 108 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 MIR1252-201ENST00000408861 65 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 AC244090.1-201ENST00000441884 93 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 MIR2113-201ENST00000459007 91 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 MIR1270-201ENST00000459320 83 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 RNA5SP395-201ENST00000516567 118 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 AC011603.4-201ENST00000611325 277 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 AC093783.1-201ENST00000612976 329 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-1.29□□□□□ -2.62
LIMS3P0CW19 MIR6086-201ENST00000638065 55 ntBASIC-1.29□□□□□ -2.62
LIMS3P0CW19 RNU6-502P-201ENST00000362419 108 ntBASIC-1.3□□□□□ -2.62
LIMS3P0CW19 Y_RNA.299-201ENST00000364973 94 ntBASIC-1.3□□□□□ -2.62
LIMS3P0CW19 RNU6-690P-201ENST00000365242 106 ntBASIC-1.3□□□□□ -2.62
LIMS3P0CW19 Y_RNA.374-201ENST00000365606 101 ntBASIC-1.3□□□□□ -2.62
LIMS3P0CW19 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.3□□□□□ -2.62
LIMS3P0CW19 RNU6-30P-201ENST00000384561 107 ntBASIC-1.3□□□□□ -2.62
LIMS3P0CW19 RNU4-69P-201ENST00000410677 143 ntBASIC-1.3□□□□□ -2.62
LIMS3P0CW19 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-1.3□□□□□ -2.62
LIMS3P0CW19 MIR6738-201ENST00000619620 64 ntBASIC-1.3□□□□□ -2.62
LIMS3P0CW19 Y_RNA.31-201ENST00000362574 102 ntBASIC-1.31□□□□□ -2.62
LIMS3P0CW19 Y_RNA.117-201ENST00000363294 101 ntBASIC-1.31□□□□□ -2.62
LIMS3P0CW19 Y_RNA.568-201ENST00000384742 113 ntBASIC-1.31□□□□□ -2.62
LIMS3P0CW19 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.31□□□□□ -2.62
LIMS3P0CW19 snoU13.19-201ENST00000459148 104 ntBASIC-1.31□□□□□ -2.62
LIMS3P0CW19 RNU7-106P-201ENST00000459514 67 ntBASIC-1.31□□□□□ -2.62
LIMS3P0CW19 RNU2-35P-201ENST00000516446 142 ntBASIC-1.31□□□□□ -2.62
LIMS3P0CW19 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.31□□□□□ -2.62
LIMS3P0CW19 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC-1.31□□□□□ -2.62
LIMS3P0CW19 AL132765.2-201ENST00000610812 351 ntBASIC-1.31□□□□□ -2.62
LIMS3P0CW19 Y_RNA.16-201ENST00000362421 102 ntBASIC-1.32□□□□□ -2.62
LIMS3P0CW19 Y_RNA.60-201ENST00000362831 98 ntBASIC-1.32□□□□□ -2.62
LIMS3P0CW19 RNU6-103P-201ENST00000363686 107 ntBASIC-1.32□□□□□ -2.62
LIMS3P0CW19 Y_RNA.390-201ENST00000383932 102 ntBASIC-1.32□□□□□ -2.62
LIMS3P0CW19 SNORA51.5-201ENST00000384126 131 ntBASIC-1.32□□□□□ -2.62
LIMS3P0CW19 RNU6-823P-201ENST00000391042 103 ntBASIC-1.32□□□□□ -2.62
LIMS3P0CW19 SNORD38.3-201ENST00000516599 73 ntBASIC-1.32□□□□□ -2.62
LIMS3P0CW19 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.32□□□□□ -2.62
LIMS3P0CW19 Y_RNA.197-201ENST00000364004 102 ntBASIC-1.33□□□□□ -2.62
LIMS3P0CW19 Y_RNA.328-201ENST00000365208 113 ntBASIC-1.33□□□□□ -2.62
LIMS3P0CW19 AL121914.1-201ENST00000450188 156 ntBASIC-1.33□□□□□ -2.62
LIMS3P0CW19 SNORD2.1-201ENST00000458762 69 ntBASIC-1.33□□□□□ -2.62
LIMS3P0CW19 snoU13.11-201ENST00000459219 104 ntBASIC-1.33□□□□□ -2.62
LIMS3P0CW19 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-1.33□□□□□ -2.62
LIMS3P0CW19 Y_RNA.64-201ENST00000362845 102 ntBASIC-1.34□□□□□ -2.62
LIMS3P0CW19 RNU6-770P-201ENST00000363929 105 ntBASIC-1.34□□□□□ -2.62
LIMS3P0CW19 Y_RNA.518-201ENST00000384552 113 ntBASIC-1.34□□□□□ -2.62
LIMS3P0CW19 SNORD77B-201ENST00000391112 67 ntBASIC-1.34□□□□□ -2.62
LIMS3P0CW19 AL500527.2-201ENST00000454105 95 ntBASIC-1.34□□□□□ -2.62
LIMS3P0CW19 RNU7-55P-201ENST00000459426 62 ntBASIC-1.34□□□□□ -2.62
LIMS3P0CW19 RNU6-287P-201ENST00000516230 98 ntBASIC-1.34□□□□□ -2.62
LIMS3P0CW19 MIR4324-201ENST00000584846 72 ntBASIC-1.34□□□□□ -2.62
LIMS3P0CW19 Y_RNA.315-201ENST00000365117 102 ntBASIC-1.35□□□□□ -2.63
LIMS3P0CW19 Y_RNA.342-201ENST00000365352 113 ntBASIC-1.35□□□□□ -2.63
LIMS3P0CW19 RNU4-17P-201ENST00000365598 141 ntBASIC-1.35□□□□□ -2.63
LIMS3P0CW19 Y_RNA.645-201ENST00000391229 102 ntBASIC-1.35□□□□□ -2.63
LIMS3P0CW19 RNU6-101P-201ENST00000410323 104 ntBASIC-1.35□□□□□ -2.63
LIMS3P0CW19 RNU7-2P-201ENST00000516096 62 ntBASIC-1.35□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 147 ms