Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 MIR583-201ENST00000384846 75 ntBASIC2.33□□□□□ -2.04
NOD1Q9Y239 MIR181B2-201ENST00000385004 89 ntBASIC2.33□□□□□ -2.04
NOD1Q9Y239 SNORA48.3-201ENST00000391081 134 ntBASIC2.33□□□□□ -2.04
NOD1Q9Y239 RNU6-1165P-201ENST00000410119 107 ntBASIC2.33□□□□□ -2.04
NOD1Q9Y239 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC2.33□□□□□ -2.04
NOD1Q9Y239 RNA5SP82-201ENST00000516707 92 ntBASIC2.33□□□□□ -2.04
NOD1Q9Y239 AC019176.1-201ENST00000518519 225 ntBASIC2.33□□□□□ -2.04
NOD1Q9Y239 AP003716.2-201ENST00000528260 108 ntBASIC2.33□□□□□ -2.04
NOD1Q9Y239 AC138749.4-201ENST00000563970 127 ntBASIC2.33□□□□□ -2.04
NOD1Q9Y239 AC090897.1-201ENST00000580909 226 ntBASIC2.33□□□□□ -2.04
NOD1Q9Y239 MIR5694-201ENST00000581190 76 ntBASIC2.33□□□□□ -2.04
NOD1Q9Y239 MIR6073-201ENST00000352083 89 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 MIR103A2-201ENST00000362154 78 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 SNORD1A-201ENST00000364968 72 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 RNU6-979P-201ENST00000383896 107 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 RNU6-1124P-201ENST00000384169 107 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 SNORA2B-201ENST00000384583 137 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
NOD1Q9Y239 MIR1185-1-201ENST00000408598 86 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 RNA5SP181-201ENST00000410246 98 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 RNA5SP233-201ENST00000459153 113 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 RPS27P21-201ENST00000486977 252 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 AC079140.2-201ENST00000506193 142 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 AL513043.2-201ENST00000573941 143 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 MIR4500-201ENST00000579472 76 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 MIR5588-201ENST00000581890 63 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 MIR3202-2-201ENST00000635980 79 ntBASIC2.32□□□□□ -2.04
NOD1Q9Y239 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.31□□□□□ -2.04
NOD1Q9Y239 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.31□□□□□ -2.04
NOD1Q9Y239 MIR302D-201ENST00000362275 68 ntBASIC2.31□□□□□ -2.04
NOD1Q9Y239 MIR30A-201ENST00000385092 71 ntBASIC2.31□□□□□ -2.04
NOD1Q9Y239 U8.13-201ENST00000390842 128 ntBASIC2.31□□□□□ -2.04
NOD1Q9Y239 SNORA26.9-201ENST00000391322 122 ntBASIC2.31□□□□□ -2.04
NOD1Q9Y239 AL356379.1-201ENST00000414105 126 ntBASIC2.31□□□□□ -2.04
NOD1Q9Y239 RNU11-2P-201ENST00000516898 142 ntBASIC2.31□□□□□ -2.04
NOD1Q9Y239 SNORA44.1-201ENST00000517031 108 ntBASIC2.31□□□□□ -2.04
NOD1Q9Y239 AC020891.4-201ENST00000605745 93 ntBASIC2.31□□□□□ -2.04
NOD1Q9Y239 U6.109-201ENST00000636749 87 ntBASIC2.31□□□□□ -2.04
NOD1Q9Y239 RNU6-228P-201ENST00000362700 106 ntBASIC2.3□□□□□ -2.04
NOD1Q9Y239 RNA5SP264-201ENST00000363115 107 ntBASIC2.3□□□□□ -2.04
NOD1Q9Y239 Y_RNA.191-201ENST00000363972 113 ntBASIC2.3□□□□□ -2.04
NOD1Q9Y239 RPL30P7-201ENST00000479312 323 ntBASIC2.3□□□□□ -2.04
NOD1Q9Y239 RNU6-638P-201ENST00000516582 104 ntBASIC2.3□□□□□ -2.04
NOD1Q9Y239 Y_RNA.783-201ENST00000613546 102 ntBASIC2.3□□□□□ -2.04
NOD1Q9Y239 AC025521.1-201ENST00000621624 286 ntBASIC2.3□□□□□ -2.04
NOD1Q9Y239 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.3□□□□□ -2.04
NOD1Q9Y239 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.3□□□□□ -2.04
NOD1Q9Y239 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.29□□□□□ -2.04
NOD1Q9Y239 Y_RNA.676-201ENST00000516393 96 ntBASIC2.29□□□□□ -2.04
NOD1Q9Y239 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.29□□□□□ -2.04
NOD1Q9Y239 uc_338.6-201ENST00000613544 171 ntBASIC2.29□□□□□ -2.04
NOD1Q9Y239 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
NOD1Q9Y239 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.28□□□□□ -2.04
NOD1Q9Y239 RNA5SP133-201ENST00000363368 119 ntBASIC2.28□□□□□ -2.04
NOD1Q9Y239 RNU6-654P-201ENST00000364373 107 ntBASIC2.28□□□□□ -2.04
NOD1Q9Y239 MT-TF-201ENST00000387314 71 ntBASIC2.28□□□□□ -2.04
NOD1Q9Y239 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
NOD1Q9Y239 RNU6-613P-201ENST00000410412 108 ntBASIC2.28□□□□□ -2.04
NOD1Q9Y239 Y_RNA.611-201ENST00000410682 108 ntBASIC2.28□□□□□ -2.04
NOD1Q9Y239 HMGN2P19-201ENST00000425149 265 ntBASIC2.28□□□□□ -2.04
NOD1Q9Y239 AC245517.4-201ENST00000448601 281 ntBASIC2.28□□□□□ -2.04
NOD1Q9Y239 SNORA31.11-201ENST00000516528 139 ntBASIC2.28□□□□□ -2.04
NOD1Q9Y239 MIR3937-201ENST00000580135 106 ntBASIC2.28□□□□□ -2.04
NOD1Q9Y239 MIR6840-201ENST00000611937 71 ntBASIC2.28□□□□□ -2.04
NOD1Q9Y239 MIR6845-201ENST00000613182 61 ntBASIC2.28□□□□□ -2.04
NOD1Q9Y239 Y_RNA.4-201ENST00000362333 112 ntBASIC2.27□□□□□ -2.05
NOD1Q9Y239 SNORD33-201ENST00000362761 85 ntBASIC2.27□□□□□ -2.05
NOD1Q9Y239 Y_RNA.119-201ENST00000363301 96 ntBASIC2.27□□□□□ -2.05
NOD1Q9Y239 RNU6-509P-201ENST00000363519 107 ntBASIC2.27□□□□□ -2.05
NOD1Q9Y239 RNU6-1065P-201ENST00000384513 106 ntBASIC2.27□□□□□ -2.05
NOD1Q9Y239 RNA5SP95-201ENST00000410319 137 ntBASIC2.27□□□□□ -2.05
NOD1Q9Y239 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
NOD1Q9Y239 AL161722.3-201ENST00000605789 2983 ntBASIC2.26□□□□□ -2.05
NOD1Q9Y239 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
NOD1Q9Y239 MIR377-201ENST00000362145 69 ntBASIC2.26□□□□□ -2.05
NOD1Q9Y239 MIRLET7G-201ENST00000362280 84 ntBASIC2.26□□□□□ -2.05
NOD1Q9Y239 RNU6-633P-201ENST00000362612 103 ntBASIC2.26□□□□□ -2.05
NOD1Q9Y239 Y_RNA.338-201ENST00000365320 114 ntBASIC2.26□□□□□ -2.05
NOD1Q9Y239 RNU7-171P-201ENST00000459581 62 ntBASIC2.26□□□□□ -2.05
NOD1Q9Y239 AC121758.2-201ENST00000553271 193 ntBASIC2.26□□□□□ -2.05
NOD1Q9Y239 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
NOD1Q9Y239 Y_RNA.426-201ENST00000384068 113 ntBASIC2.25□□□□□ -2.05
NOD1Q9Y239 MIR1255A-201ENST00000408338 113 ntBASIC2.25□□□□□ -2.05
NOD1Q9Y239 AL161932.1-201ENST00000437408 146 ntBASIC2.25□□□□□ -2.05
NOD1Q9Y239 SNRPGP12-201ENST00000449481 213 ntBASIC2.25□□□□□ -2.05
NOD1Q9Y239 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC2.25□□□□□ -2.05
NOD1Q9Y239 MIR8066-201ENST00000617280 78 ntBASIC2.25□□□□□ -2.05
NOD1Q9Y239 MIR548BB-201ENST00000626714 66 ntBASIC2.25□□□□□ -2.05
NOD1Q9Y239 RNU1-17P-201ENST00000363022 152 ntBASIC2.24□□□□□ -2.05
NOD1Q9Y239 MIR676-201ENST00000390702 67 ntBASIC2.24□□□□□ -2.05
NOD1Q9Y239 SNORA40.18-201ENST00000391200 128 ntBASIC2.24□□□□□ -2.05
NOD1Q9Y239 RNA5SP225-201ENST00000410874 135 ntBASIC2.24□□□□□ -2.05
NOD1Q9Y239 BX276092.1-201ENST00000427368 251 ntBASIC2.24□□□□□ -2.05
NOD1Q9Y239 MIR3664-201ENST00000579074 99 ntBASIC2.24□□□□□ -2.05
NOD1Q9Y239 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.24□□□□□ -2.05
NOD1Q9Y239 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.24□□□□□ -2.05
NOD1Q9Y239 RNU4-83P-201ENST00000410863 133 ntBASIC2.23□□□□□ -2.05
NOD1Q9Y239 RNA5SP182-201ENST00000516064 82 ntBASIC2.23□□□□□ -2.05
NOD1Q9Y239 RNU6-850P-201ENST00000516934 103 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 197.8 ms