Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 ZNF209P-201ENST00000593450 2304 ntBASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 RNA5SP325-201ENST00000363756 130 ntBASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 Y_RNA.544-201ENST00000384650 113 ntBASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 MIR206-201ENST00000384872 86 ntBASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 MIR605-201ENST00000385078 83 ntBASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 RNU2-40P-201ENST00000410833 196 ntBASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 RNU7-62P-201ENST00000458856 62 ntBASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 RNU6-902P-201ENST00000517212 91 ntBASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 RNU6-537P-201ENST00000517277 103 ntBASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 DEFB131E-201ENST00000532329 154 ntBASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 AL512310.12-203ENST00000640543 90 ntBASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.73□□□□□ -2.13
NKX2-4Q9H2Z4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
NKX2-4Q9H2Z4 RNY3P2-201ENST00000362918 102 ntBASIC1.72□□□□□ -2.13
NKX2-4Q9H2Z4 MIR590-201ENST00000385008 97 ntBASIC1.72□□□□□ -2.13
NKX2-4Q9H2Z4 RNU6-679P-201ENST00000391003 106 ntBASIC1.72□□□□□ -2.13
NKX2-4Q9H2Z4 RNU6-613P-201ENST00000410412 108 ntBASIC1.72□□□□□ -2.13
NKX2-4Q9H2Z4 SNORA19.1-201ENST00000410656 129 ntBASIC1.72□□□□□ -2.13
NKX2-4Q9H2Z4 Y_RNA.677-201ENST00000516401 85 ntBASIC1.72□□□□□ -2.13
NKX2-4Q9H2Z4 RNU6-1018P-201ENST00000516577 106 ntBASIC1.72□□□□□ -2.13
NKX2-4Q9H2Z4 SNORD114-10-201ENST00000363409 72 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-1099P-201ENST00000363533 107 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 RNY1P13-201ENST00000365030 105 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-53P-201ENST00000365367 106 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 MIR1323-201ENST00000408090 73 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-1054P-201ENST00000411293 104 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 AC048334.1-201ENST00000477975 159 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-904P-201ENST00000516206 101 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 RNU7-137P-201ENST00000516788 62 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 MIR6779-201ENST00000617283 64 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 MIR6740-201ENST00000618268 113 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 Y_RNA.818-201ENST00000618813 71 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 uc_338.20-201ENST00000621563 178 ntBASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
NKX2-4Q9H2Z4 MIR377-201ENST00000362145 69 ntBASIC1.7□□□□□ -2.14
NKX2-4Q9H2Z4 Y_RNA.10-201ENST00000362371 110 ntBASIC1.7□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-832P-201ENST00000363319 107 ntBASIC1.7□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-654P-201ENST00000364373 107 ntBASIC1.7□□□□□ -2.14
NKX2-4Q9H2Z4 MIR577-201ENST00000385196 96 ntBASIC1.7□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-1165P-201ENST00000410119 107 ntBASIC1.7□□□□□ -2.14
NKX2-4Q9H2Z4 SNORA31.2-201ENST00000516019 134 ntBASIC1.7□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-865P-201ENST00000364772 107 ntBASIC1.69□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-949P-201ENST00000384040 107 ntBASIC1.69□□□□□ -2.14
NKX2-4Q9H2Z4 Y_RNA.448-201ENST00000384185 108 ntBASIC1.69□□□□□ -2.14
NKX2-4Q9H2Z4 MIR563-201ENST00000385080 79 ntBASIC1.69□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.69□□□□□ -2.14
NKX2-4Q9H2Z4 AL353813.1-201ENST00000440700 253 ntBASIC1.69□□□□□ -2.14
NKX2-4Q9H2Z4 AC105081.1-201ENST00000617727 106 ntBASIC1.69□□□□□ -2.14
NKX2-4Q9H2Z4 SEPT14P17-201ENST00000617978 177 ntBASIC1.69□□□□□ -2.14
NKX2-4Q9H2Z4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-1313P-201ENST00000362622 102 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 SNORD114-26-201ENST00000363543 72 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-447P-201ENST00000410293 104 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNA5SP95-201ENST00000410319 137 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-1118P-201ENST00000410382 104 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-1076P-201ENST00000410397 104 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-355P-201ENST00000410427 104 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-791P-201ENST00000410467 104 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-705P-201ENST00000410601 104 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-1100P-201ENST00000410691 104 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-860P-201ENST00000410860 104 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-1217P-201ENST00000411276 104 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-785P-201ENST00000411324 104 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 SNORA40.13-201ENST00000516379 120 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 U6.90-201ENST00000614007 104 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 AP001318.4-201ENST00000616637 121 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 AL353770.2-201ENST00000620024 78 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 U6.70-201ENST00000620287 104 ntBASIC1.68□□□□□ -2.14
NKX2-4Q9H2Z4 Y_RNA.330-201ENST00000365230 109 ntBASIC1.67□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-1201P-201ENST00000384227 107 ntBASIC1.67□□□□□ -2.14
NKX2-4Q9H2Z4 SUMO2P12-201ENST00000405924 140 ntBASIC1.67□□□□□ -2.14
NKX2-4Q9H2Z4 Y_RNA.601-201ENST00000410500 113 ntBASIC1.67□□□□□ -2.14
NKX2-4Q9H2Z4 SCARNA23-201ENST00000516060 130 ntBASIC1.67□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-109P-201ENST00000516364 107 ntBASIC1.67□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-184P-201ENST00000516514 107 ntBASIC1.67□□□□□ -2.14
NKX2-4Q9H2Z4 AC133485.1-201ENST00000567176 124 ntBASIC1.67□□□□□ -2.14
NKX2-4Q9H2Z4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
NKX2-4Q9H2Z4 MIR96-201ENST00000362288 78 ntBASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 Y_RNA.377-201ENST00000365644 108 ntBASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 SNORA2B-201ENST00000384583 137 ntBASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 MIR517C-201ENST00000385103 95 ntBASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 MT-TF-201ENST00000387314 71 ntBASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 RNU6-1321P-201ENST00000390905 107 ntBASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 SNORA31.24-201ENST00000517232 57 ntBASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 AC096720.1-201ENST00000604441 183 ntBASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 AL442128.1-201ENST00000615151 90 ntBASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 AC022709.1-201ENST00000615967 87 ntBASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 MIR6515-201ENST00000619843 57 ntBASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
NKX2-4Q9H2Z4 Y_RNA.98-201ENST00000363109 102 ntBASIC1.65□□□□□ -2.15
NKX2-4Q9H2Z4 RNU6-1307P-201ENST00000391012 103 ntBASIC1.65□□□□□ -2.15
NKX2-4Q9H2Z4 RPS29P28-201ENST00000446439 141 ntBASIC1.65□□□□□ -2.15
NKX2-4Q9H2Z4 RNU7-48P-201ENST00000458875 63 ntBASIC1.65□□□□□ -2.15
NKX2-4Q9H2Z4 MIR4285-201ENST00000581001 85 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 335.7 ms