Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 Y_RNA.218-201ENST00000364218 104 ntBASIC0.8□□□□□ -2.28
UPF3AQ9H1J1 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.8□□□□□ -2.28
UPF3AQ9H1J1 RN7SKP19-201ENST00000516016 252 ntBASIC0.8□□□□□ -2.28
UPF3AQ9H1J1 AC141846.1-201ENST00000568348 142 ntBASIC0.8□□□□□ -2.28
UPF3AQ9H1J1 MIR548AE2-201ENST00000583456 67 ntBASIC0.8□□□□□ -2.28
UPF3AQ9H1J1 MIRLET7F2-201ENST00000385277 83 ntBASIC0.79□□□□□ -2.28
UPF3AQ9H1J1 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.79□□□□□ -2.28
UPF3AQ9H1J1 AL022718.1-201ENST00000412004 84 ntBASIC0.79□□□□□ -2.28
UPF3AQ9H1J1 RNU7-113P-201ENST00000459273 62 ntBASIC0.79□□□□□ -2.28
UPF3AQ9H1J1 ACA64.5-201ENST00000516207 127 ntBASIC0.79□□□□□ -2.28
UPF3AQ9H1J1 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.79□□□□□ -2.28
UPF3AQ9H1J1 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 RNU6-647P-201ENST00000364243 107 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 RNY1P13-201ENST00000365030 105 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 RNU6-934P-201ENST00000365154 107 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 SNORA32-201ENST00000384072 121 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 MIR146A-201ENST00000385201 99 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 MIR1827-201ENST00000408549 66 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 RNA5SP193-201ENST00000410353 107 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 Y_RNA.630-201ENST00000411370 108 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 RPS26P5-201ENST00000418544 335 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 RNU7-107P-201ENST00000459121 61 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 RNU6-1211P-201ENST00000459179 105 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 RNA5SP33-201ENST00000516687 98 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 RNU7-35P-201ENST00000517174 62 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 TUG1_4.1-201ENST00000619464 181 ntBASIC0.78□□□□□ -2.28
UPF3AQ9H1J1 RNU1-36P-201ENST00000365130 165 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 Y_RNA.374-201ENST00000365606 101 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 MIR200A-201ENST00000384875 90 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 MIR193B-201ENST00000384907 83 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 U8.15-201ENST00000390947 134 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 AL603908.1-201ENST00000406098 201 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 RNU6-735P-201ENST00000410612 107 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 MIR18B-201ENST00000454574 71 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 RNU6-893P-201ENST00000458841 100 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 PSMC1P5-201ENST00000512850 177 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 RNA5SP255-201ENST00000516370 107 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 RNU6-1234P-201ENST00000516877 103 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 MIR4771-2-201ENST00000577758 74 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 MIR4771-1-201ENST00000582617 74 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 AL359881.1-201ENST00000602916 267 ntBASIC0.77□□□□□ -2.29
UPF3AQ9H1J1 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
UPF3AQ9H1J1 SNORD114-24-201ENST00000365029 72 ntBASIC0.76□□□□□ -2.29
UPF3AQ9H1J1 SNORD58C-201ENST00000365223 64 ntBASIC0.76□□□□□ -2.29
UPF3AQ9H1J1 MIR942-201ENST00000401111 86 ntBASIC0.76□□□□□ -2.29
UPF3AQ9H1J1 AL606490.4-201ENST00000423117 127 ntBASIC0.76□□□□□ -2.29
UPF3AQ9H1J1 RNU6-772P-201ENST00000516042 105 ntBASIC0.76□□□□□ -2.29
UPF3AQ9H1J1 RNU7-79P-201ENST00000516082 62 ntBASIC0.76□□□□□ -2.29
UPF3AQ9H1J1 MIR4711-201ENST00000578274 70 ntBASIC0.76□□□□□ -2.29
UPF3AQ9H1J1 AL590095.2-201ENST00000604136 117 ntBASIC0.76□□□□□ -2.29
UPF3AQ9H1J1 AL589743.1-201ENST00000551932 2712 ntBASIC0.75□□□□□ -2.29
UPF3AQ9H1J1 RNU6-949P-201ENST00000384040 107 ntBASIC0.75□□□□□ -2.29
UPF3AQ9H1J1 MT-TF-201ENST00000387314 71 ntBASIC0.75□□□□□ -2.29
UPF3AQ9H1J1 SNORD89-201ENST00000390981 114 ntBASIC0.75□□□□□ -2.29
UPF3AQ9H1J1 MIR1263-201ENST00000408324 86 ntBASIC0.75□□□□□ -2.29
UPF3AQ9H1J1 RNA5SP237-201ENST00000410414 113 ntBASIC0.75□□□□□ -2.29
UPF3AQ9H1J1 RNU6-994P-201ENST00000410507 111 ntBASIC0.75□□□□□ -2.29
UPF3AQ9H1J1 RNU6-1086P-201ENST00000410930 100 ntBASIC0.75□□□□□ -2.29
UPF3AQ9H1J1 RNU7-185P-201ENST00000459215 60 ntBASIC0.75□□□□□ -2.29
UPF3AQ9H1J1 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.75□□□□□ -2.29
UPF3AQ9H1J1 MIR1273G-201ENST00000577677 100 ntBASIC0.75□□□□□ -2.29
UPF3AQ9H1J1 MIR4676-201ENST00000583078 72 ntBASIC0.75□□□□□ -2.29
UPF3AQ9H1J1 AC023934.1-201ENST00000574529 2389 ntBASIC0.74□□□□□ -2.29
UPF3AQ9H1J1 Y_RNA.71-201ENST00000362892 104 ntBASIC0.74□□□□□ -2.29
UPF3AQ9H1J1 RNU6-81P-201ENST00000365608 104 ntBASIC0.74□□□□□ -2.29
UPF3AQ9H1J1 Y_RNA.588-201ENST00000391254 102 ntBASIC0.74□□□□□ -2.29
UPF3AQ9H1J1 MIR3910-1-201ENST00000580936 111 ntBASIC0.74□□□□□ -2.29
UPF3AQ9H1J1 MIR4804-201ENST00000581683 73 ntBASIC0.74□□□□□ -2.29
UPF3AQ9H1J1 RNA5SP347-201ENST00000362445 119 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 SNORD114-23-201ENST00000363536 72 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 MIR100-201ENST00000385259 80 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 RNU6-1307P-201ENST00000391012 103 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 RNU4-69P-201ENST00000410677 143 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 FABP5P4-201ENST00000437203 171 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 RNU7-56P-201ENST00000458744 62 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 U7.7-201ENST00000459276 60 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 PDCD5P2-201ENST00000507570 312 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 RNU6-659P-201ENST00000516454 104 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 RNU6-1110P-201ENST00000516462 101 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 SNORD67.1-201ENST00000516618 108 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 RNU7-137P-201ENST00000516788 62 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 AC008608.1-201ENST00000603910 127 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 MIR8066-201ENST00000617280 78 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 AC087741.2-201ENST00000619415 172 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 AC010487.4-201ENST00000637027 61 ntBASIC0.73□□□□□ -2.29
UPF3AQ9H1J1 MIR539-201ENST00000365690 78 ntBASIC0.72□□□□□ -2.29
UPF3AQ9H1J1 RNU6-80P-201ENST00000384195 107 ntBASIC0.72□□□□□ -2.29
UPF3AQ9H1J1 RNU6-959P-201ENST00000384671 107 ntBASIC0.72□□□□□ -2.29
UPF3AQ9H1J1 MIR605-201ENST00000385078 83 ntBASIC0.72□□□□□ -2.29
UPF3AQ9H1J1 MIR125B2-201ENST00000385128 89 ntBASIC0.72□□□□□ -2.29
UPF3AQ9H1J1 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.72□□□□□ -2.29
UPF3AQ9H1J1 RNU6-1061P-201ENST00000516530 99 ntBASIC0.72□□□□□ -2.29
UPF3AQ9H1J1 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.72□□□□□ -2.29
UPF3AQ9H1J1 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 MIR1-1-201ENST00000362147 71 ntBASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 RNA5SP499-201ENST00000363982 119 ntBASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 Y_RNA.198-201ENST00000364013 98 ntBASIC0.71□□□□□ -2.3
UPF3AQ9H1J1 Y_RNA.528-201ENST00000384575 108 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms