Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 RNU6-1321P-201ENST00000390905 107 ntBASIC-2.53□□□□□ -2.81
SCAPERQ9BY12 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC-2.53□□□□□ -2.81
SCAPERQ9BY12 MIR3139-201ENST00000579145 76 ntBASIC-2.53□□□□□ -2.81
SCAPERQ9BY12 AC006504.6-201ENST00000590142 199 ntBASIC-2.53□□□□□ -2.81
SCAPERQ9BY12 MIR548O2-201ENST00000616090 70 ntBASIC-2.53□□□□□ -2.81
SCAPERQ9BY12 Y_RNA.353-201ENST00000365440 108 ntBASIC-2.54□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.432-201ENST00000384087 111 ntBASIC-2.54□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.570-201ENST00000384750 101 ntBASIC-2.54□□□□□ -2.82
SCAPERQ9BY12 RNU6-337P-201ENST00000391243 106 ntBASIC-2.54□□□□□ -2.82
SCAPERQ9BY12 RNU7-48P-201ENST00000458875 63 ntBASIC-2.54□□□□□ -2.82
SCAPERQ9BY12 MTCO2P24-201ENST00000515611 426 ntBASIC-2.54□□□□□ -2.82
SCAPERQ9BY12 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC-2.54□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.98-201ENST00000363109 102 ntBASIC-2.55□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.207-201ENST00000364142 106 ntBASIC-2.55□□□□□ -2.82
SCAPERQ9BY12 RNY3P4-201ENST00000384428 101 ntBASIC-2.55□□□□□ -2.82
SCAPERQ9BY12 RNU6ATAC19P-201ENST00000408096 110 ntBASIC-2.55□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.596-201ENST00000410462 109 ntBASIC-2.55□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.56□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.331-201ENST00000365267 102 ntBASIC-2.56□□□□□ -2.82
SCAPERQ9BY12 AL593851.1-201ENST00000426171 157 ntBASIC-2.56□□□□□ -2.82
SCAPERQ9BY12 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.56□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.530-201ENST00000384587 101 ntBASIC-2.57□□□□□ -2.82
SCAPERQ9BY12 SNORD78.2-201ENST00000391076 69 ntBASIC-2.57□□□□□ -2.82
SCAPERQ9BY12 RNU6-1248P-201ENST00000391096 64 ntBASIC-2.57□□□□□ -2.82
SCAPERQ9BY12 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-2.57□□□□□ -2.82
SCAPERQ9BY12 RNU6-762P-201ENST00000517107 102 ntBASIC-2.57□□□□□ -2.82
SCAPERQ9BY12 FGF7P2-201ENST00000332473 296 ntBASIC-2.58□□□□□ -2.82
SCAPERQ9BY12 SNORD75.2-201ENST00000408784 58 ntBASIC-2.58□□□□□ -2.82
SCAPERQ9BY12 FGF7P6-202ENST00000451282 293 ntBASIC-2.58□□□□□ -2.82
SCAPERQ9BY12 MIR2053-201ENST00000459295 91 ntBASIC-2.58□□□□□ -2.82
SCAPERQ9BY12 MIR3145-201ENST00000580727 82 ntBASIC-2.58□□□□□ -2.82
SCAPERQ9BY12 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.58□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.105-201ENST00000363182 111 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.342-201ENST00000365352 113 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.491-201ENST00000384417 107 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 MIR4659A-201ENST00000580269 81 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 MIR4464-201ENST00000580818 92 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 AC092794.2-201ENST00000620933 563 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.5-201ENST00000362334 102 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 Y_RNA.77-201ENST00000362962 107 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 RNU6-553P-201ENST00000364047 96 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 RNU6-648P-201ENST00000410190 107 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 RNU7-66P-201ENST00000459469 62 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 RNU6-168P-201ENST00000516189 101 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 AP001362.1-201ENST00000625165 124 ntBASIC-2.59□□□□□ -2.82
SCAPERQ9BY12 RNU6-924P-201ENST00000362926 108 ntBASIC-2.6□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.560-201ENST00000384689 102 ntBASIC-2.6□□□□□ -2.83
SCAPERQ9BY12 RPS29P25-201ENST00000481709 171 ntBASIC-2.6□□□□□ -2.83
SCAPERQ9BY12 RNU6-1006P-201ENST00000516998 103 ntBASIC-2.6□□□□□ -2.83
SCAPERQ9BY12 MIR4724-201ENST00000579485 89 ntBASIC-2.6□□□□□ -2.83
SCAPERQ9BY12 MIR367-201ENST00000362299 68 ntBASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.175-201ENST00000363794 111 ntBASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.383-201ENST00000383855 97 ntBASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.542-201ENST00000384641 111 ntBASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 RNA5SP144-201ENST00000410846 116 ntBASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 RNU6-1299P-201ENST00000516316 100 ntBASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 MRPS36P3-201ENST00000519284 130 ntBASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 MIR3942-201ENST00000585264 109 ntBASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 MIR1244-1-201ENST00000612829 85 ntBASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 MIR1244-3-201ENST00000635744 85 ntBASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 MIR1244-2-201ENST00000636449 85 ntBASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 MIR1244-4-202ENST00000636813 85 ntBASIC-2.61□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.91-201ENST00000363042 107 ntBASIC-2.62□□□□□ -2.83
SCAPERQ9BY12 MIR516A2-201ENST00000384888 90 ntBASIC-2.62□□□□□ -2.83
SCAPERQ9BY12 MIR516A1-201ENST00000385033 90 ntBASIC-2.62□□□□□ -2.83
SCAPERQ9BY12 RNU6-400P-201ENST00000391173 106 ntBASIC-2.62□□□□□ -2.83
SCAPERQ9BY12 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-2.62□□□□□ -2.83
SCAPERQ9BY12 AC084781.2-201ENST00000615568 161 ntBASIC-2.62□□□□□ -2.83
SCAPERQ9BY12 TRDV1-202ENST00000621643 102 ntBASIC-2.62□□□□□ -2.83
SCAPERQ9BY12 MIR6888-201ENST00000621977 67 ntBASIC-2.62□□□□□ -2.83
SCAPERQ9BY12 RNA5SP405-201ENST00000363059 114 ntBASIC-2.63□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.120-201ENST00000363304 110 ntBASIC-2.63□□□□□ -2.83
SCAPERQ9BY12 SNORD115-22-201ENST00000364456 82 ntBASIC-2.63□□□□□ -2.83
SCAPERQ9BY12 SNORA69.1-201ENST00000390904 137 ntBASIC-2.63□□□□□ -2.83
SCAPERQ9BY12 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC-2.63□□□□□ -2.83
SCAPERQ9BY12 MIR548H3-201ENST00000408771 118 ntBASIC-2.63□□□□□ -2.83
SCAPERQ9BY12 RNU2-55P-201ENST00000411146 174 ntBASIC-2.63□□□□□ -2.83
SCAPERQ9BY12 AC144568.1-201ENST00000520139 137 ntBASIC-2.63□□□□□ -2.83
SCAPERQ9BY12 MIR548AE2-201ENST00000583456 67 ntBASIC-2.63□□□□□ -2.83
SCAPERQ9BY12 AC133104.2-201ENST00000615272 193 ntBASIC-2.63□□□□□ -2.83
SCAPERQ9BY12 MIR6128-201ENST00000615528 109 ntBASIC-2.63□□□□□ -2.83
SCAPERQ9BY12 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-2.63□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.127-201ENST00000363386 109 ntBASIC-2.64□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.162-201ENST00000363683 102 ntBASIC-2.64□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.64□□□□□ -2.83
SCAPERQ9BY12 RNY3P10-201ENST00000384764 102 ntBASIC-2.64□□□□□ -2.83
SCAPERQ9BY12 MIR513B-201ENST00000385136 84 ntBASIC-2.64□□□□□ -2.83
SCAPERQ9BY12 MT-TM-201ENST00000387377 68 ntBASIC-2.64□□□□□ -2.83
SCAPERQ9BY12 RNA5SP153-201ENST00000516498 76 ntBASIC-2.64□□□□□ -2.83
SCAPERQ9BY12 RNU6-835P-201ENST00000516974 104 ntBASIC-2.64□□□□□ -2.83
SCAPERQ9BY12 MIR3129-201ENST00000581095 76 ntBASIC-2.64□□□□□ -2.83
SCAPERQ9BY12 U6.100-201ENST00000636230 99 ntBASIC-2.64□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.2-201ENST00000362330 96 ntBASIC-2.65□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.169-201ENST00000363745 96 ntBASIC-2.65□□□□□ -2.83
SCAPERQ9BY12 RNU6-194P-201ENST00000363862 105 ntBASIC-2.65□□□□□ -2.83
SCAPERQ9BY12 RNU4-10P-201ENST00000364383 140 ntBASIC-2.65□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.448-201ENST00000384185 108 ntBASIC-2.65□□□□□ -2.83
SCAPERQ9BY12 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.65□□□□□ -2.83
Retrieved 100 of 98,524 protein–RNA pairs in 210.7 ms