Protein–RNA interactions for Protein: Q96NZ1

FOXN4, Forkhead box protein N4, humanhuman

Predictions only

Length 517 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4Q96NZ1 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.89□□□□□ -2.27
FOXN4Q96NZ1 RNU6-834P-201ENST00000362367 110 ntBASIC0.88□□□□□ -2.27
FOXN4Q96NZ1 SNORA63.5-201ENST00000363548 123 ntBASIC0.88□□□□□ -2.27
FOXN4Q96NZ1 Y_RNA.344-201ENST00000365381 112 ntBASIC0.88□□□□□ -2.27
FOXN4Q96NZ1 SNORA2B-201ENST00000384583 137 ntBASIC0.88□□□□□ -2.27
FOXN4Q96NZ1 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.88□□□□□ -2.27
FOXN4Q96NZ1 RNA5SP237-201ENST00000410414 113 ntBASIC0.88□□□□□ -2.27
FOXN4Q96NZ1 snoU13.2-201ENST00000459201 104 ntBASIC0.88□□□□□ -2.27
FOXN4Q96NZ1 Y_RNA.773-201ENST00000607168 90 ntBASIC0.88□□□□□ -2.27
FOXN4Q96NZ1 SEPT14P17-201ENST00000617978 177 ntBASIC0.88□□□□□ -2.27
FOXN4Q96NZ1 AC087741.2-201ENST00000619415 172 ntBASIC0.88□□□□□ -2.27
FOXN4Q96NZ1 AL035470.1-201ENST00000622571 220 ntBASIC0.88□□□□□ -2.27
FOXN4Q96NZ1 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.88□□□□□ -2.27
FOXN4Q96NZ1 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 RNY4P6-201ENST00000363667 96 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 RNU4-38P-201ENST00000364472 129 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 RNU6-1187P-201ENST00000364771 110 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 Y_RNA.299-201ENST00000364973 94 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 Y_RNA.362-201ENST00000365518 110 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 RNU6-616P-201ENST00000384353 107 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 MIR548D2-201ENST00000384955 97 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 MIR548J-201ENST00000408833 112 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 RNU6-613P-201ENST00000410412 108 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 RNU6-1086P-201ENST00000410930 100 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 RNU7-62P-201ENST00000458856 62 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 snoU13.21-201ENST00000459368 105 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 RNU11-2P-201ENST00000516898 142 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 AC023827.1-201ENST00000569247 97 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 MIR4264-201ENST00000583520 66 ntBASIC0.87□□□□□ -2.27
FOXN4Q96NZ1 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.86□□□□□ -2.27
FOXN4Q96NZ1 RNU6-215P-201ENST00000365169 102 ntBASIC0.86□□□□□ -2.27
FOXN4Q96NZ1 RNU6-880P-201ENST00000384526 107 ntBASIC0.86□□□□□ -2.27
FOXN4Q96NZ1 SNORD77B-201ENST00000391112 67 ntBASIC0.86□□□□□ -2.27
FOXN4Q96NZ1 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.86□□□□□ -2.27
FOXN4Q96NZ1 RNU7-79P-201ENST00000516082 62 ntBASIC0.86□□□□□ -2.27
FOXN4Q96NZ1 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.86□□□□□ -2.27
FOXN4Q96NZ1 AC103810.9-201ENST00000606688 112 ntBASIC0.86□□□□□ -2.27
FOXN4Q96NZ1 AL662814.1-201ENST00000617364 121 ntBASIC0.86□□□□□ -2.27
FOXN4Q96NZ1 MIR1255B1-201ENST00000636325 63 ntBASIC0.86□□□□□ -2.27
FOXN4Q96NZ1 AL589743.1-201ENST00000551932 2712 ntBASIC0.86□□□□□ -2.27
FOXN4Q96NZ1 RNU6-44P-201ENST00000384045 107 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 MT-TN-201ENST00000387400 73 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 RNU6-1165P-201ENST00000410119 107 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 RPL39P28-201ENST00000465655 155 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 SNORD79.1-201ENST00000516069 84 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 RNU6-589P-201ENST00000516485 107 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 SNORD67.1-201ENST00000516618 108 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 SNORA70.22-201ENST00000517160 124 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 RNU7-35P-201ENST00000517174 62 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 AC141846.1-201ENST00000568348 142 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 AC105081.1-201ENST00000617727 106 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 MIR6788-201ENST00000618842 66 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 AC008163.1-202ENST00000636004 2889 ntBASIC0.85□□□□□ -2.27
FOXN4Q96NZ1 SNORA63.4-201ENST00000362763 126 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 RNY1P13-201ENST00000365030 105 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 SNORA80D-201ENST00000384488 135 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 AL035461.1-201ENST00000421490 332 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 AC015818.7-201ENST00000428754 109 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 AC087499.7-201ENST00000441958 109 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 RNU7-21P-201ENST00000459430 62 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 ACA64.5-201ENST00000516207 127 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 RNU6-919P-201ENST00000516731 104 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 Y_RNA.709-201ENST00000516952 92 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 AC036111.3-201ENST00000526389 112 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 FAM71BP1-201ENST00000604431 523 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 AC022709.1-201ENST00000615967 87 ntBASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
FOXN4Q96NZ1 MIR377-201ENST00000362145 69 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 MIR30D-201ENST00000362283 70 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 SNORD115-19-201ENST00000363098 82 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 SNORD115-18-201ENST00000363293 82 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 Y_RNA.168-201ENST00000363740 102 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 SNORD115-17-201ENST00000364612 82 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 SNORD113.3-201ENST00000364630 78 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 RNU6-580P-201ENST00000365159 107 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 MIR563-201ENST00000385080 79 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 RNY4P18-201ENST00000391107 89 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 SNORA7.5-201ENST00000410672 110 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 SNORD83.1-201ENST00000411362 77 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 AC063976.4-201ENST00000421971 163 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 RNU6-1223P-201ENST00000517124 104 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 MIR4698-201ENST00000577795 80 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 MIR4679-2-201ENST00000578358 77 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 MIR151B-201ENST00000584249 96 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 RNU6-94P-201ENST00000607728 107 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 MIR6515-201ENST00000619843 57 ntBASIC0.83□□□□□ -2.28
FOXN4Q96NZ1 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
FOXN4Q96NZ1 MIR373-201ENST00000362273 69 ntBASIC0.82□□□□□ -2.28
FOXN4Q96NZ1 Y_RNA.85-201ENST00000363014 111 ntBASIC0.82□□□□□ -2.28
FOXN4Q96NZ1 Y_RNA.281-201ENST00000364774 94 ntBASIC0.82□□□□□ -2.28
FOXN4Q96NZ1 RNU6-1107P-201ENST00000364817 104 ntBASIC0.82□□□□□ -2.28
FOXN4Q96NZ1 MIR206-201ENST00000384872 86 ntBASIC0.82□□□□□ -2.28
FOXN4Q96NZ1 RNU6-816P-201ENST00000390914 107 ntBASIC0.82□□□□□ -2.28
FOXN4Q96NZ1 RNU6-1307P-201ENST00000391012 103 ntBASIC0.82□□□□□ -2.28
FOXN4Q96NZ1 RNU6-1268P-201ENST00000391214 107 ntBASIC0.82□□□□□ -2.28
FOXN4Q96NZ1 RNU6-1239P-201ENST00000391310 107 ntBASIC0.82□□□□□ -2.28
FOXN4Q96NZ1 RPL39P25-201ENST00000449384 154 ntBASIC0.82□□□□□ -2.28
FOXN4Q96NZ1 RNU7-90P-201ENST00000459216 62 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 373.6 ms