Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU6-103P-201ENST00000363686 107 ntBASIC-0.34□□□□□ -2.46
HDDC3Q8N4P3 MIR548P-201ENST00000408336 84 ntBASIC-0.34□□□□□ -2.46
HDDC3Q8N4P3 RNU4-43P-201ENST00000410628 137 ntBASIC-0.34□□□□□ -2.46
HDDC3Q8N4P3 AL121914.1-201ENST00000450188 156 ntBASIC-0.34□□□□□ -2.46
HDDC3Q8N4P3 RNU6-1149P-201ENST00000516810 97 ntBASIC-0.34□□□□□ -2.46
HDDC3Q8N4P3 Y_RNA.711-201ENST00000516993 102 ntBASIC-0.34□□□□□ -2.46
HDDC3Q8N4P3 AL442663.2-201ENST00000554385 511 ntBASIC-0.34□□□□□ -2.46
HDDC3Q8N4P3 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.34□□□□□ -2.46
HDDC3Q8N4P3 U7.6-201ENST00000610841 64 ntBASIC-0.34□□□□□ -2.46
HDDC3Q8N4P3 Y_RNA.153-201ENST00000363615 91 ntBASIC-0.35□□□□□ -2.47
HDDC3Q8N4P3 Y_RNA.237-201ENST00000364439 102 ntBASIC-0.35□□□□□ -2.47
HDDC3Q8N4P3 Y_RNA.509-201ENST00000384506 99 ntBASIC-0.35□□□□□ -2.47
HDDC3Q8N4P3 RNU6-269P-201ENST00000391077 97 ntBASIC-0.35□□□□□ -2.47
HDDC3Q8N4P3 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.35□□□□□ -2.47
HDDC3Q8N4P3 MTND4P29-201ENST00000503122 1372 ntBASIC-0.35□□□□□ -2.47
HDDC3Q8N4P3 Y_RNA.171-201ENST00000363760 102 ntBASIC-0.36□□□□□ -2.47
HDDC3Q8N4P3 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.36□□□□□ -2.47
HDDC3Q8N4P3 RNU6-713P-201ENST00000384761 107 ntBASIC-0.36□□□□□ -2.47
HDDC3Q8N4P3 RNA5SP451-201ENST00000410588 110 ntBASIC-0.36□□□□□ -2.47
HDDC3Q8N4P3 RNU7-113P-201ENST00000459273 62 ntBASIC-0.36□□□□□ -2.47
HDDC3Q8N4P3 MIR378D2-201ENST00000580636 98 ntBASIC-0.36□□□□□ -2.47
HDDC3Q8N4P3 MIR8064-201ENST00000612863 90 ntBASIC-0.36□□□□□ -2.47
HDDC3Q8N4P3 RNY1P6-201ENST00000384193 109 ntBASIC-0.37□□□□□ -2.47
HDDC3Q8N4P3 MIR548H2-201ENST00000408874 88 ntBASIC-0.37□□□□□ -2.47
HDDC3Q8N4P3 RPS29P8-201ENST00000445109 171 ntBASIC-0.37□□□□□ -2.47
HDDC3Q8N4P3 RNA5SP67-201ENST00000516422 131 ntBASIC-0.37□□□□□ -2.47
HDDC3Q8N4P3 RNU7-35P-201ENST00000517174 62 ntBASIC-0.37□□□□□ -2.47
HDDC3Q8N4P3 RNU1-29P-201ENST00000606574 126 ntBASIC-0.37□□□□□ -2.47
HDDC3Q8N4P3 Y_RNA.262-201ENST00000364641 102 ntBASIC-0.38□□□□□ -2.47
HDDC3Q8N4P3 RNU6-726P-201ENST00000364680 107 ntBASIC-0.38□□□□□ -2.47
HDDC3Q8N4P3 SNORD49B-201ENST00000365172 72 ntBASIC-0.38□□□□□ -2.47
HDDC3Q8N4P3 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.38□□□□□ -2.47
HDDC3Q8N4P3 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.38□□□□□ -2.47
HDDC3Q8N4P3 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.38□□□□□ -2.47
HDDC3Q8N4P3 SCARNA15-202ENST00000516881 127 ntBASIC-0.38□□□□□ -2.47
HDDC3Q8N4P3 RNU6-1258P-201ENST00000516911 111 ntBASIC-0.38□□□□□ -2.47
HDDC3Q8N4P3 AC096720.1-201ENST00000604441 183 ntBASIC-0.38□□□□□ -2.47
HDDC3Q8N4P3 Y_RNA.56-201ENST00000362798 112 ntBASIC-0.39□□□□□ -2.47
HDDC3Q8N4P3 MIR624-201ENST00000385217 97 ntBASIC-0.39□□□□□ -2.47
HDDC3Q8N4P3 MIR501-201ENST00000390204 84 ntBASIC-0.39□□□□□ -2.47
HDDC3Q8N4P3 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.39□□□□□ -2.47
HDDC3Q8N4P3 RNA5SP163-201ENST00000410304 99 ntBASIC-0.39□□□□□ -2.47
HDDC3Q8N4P3 MTND4LP11-201ENST00000422184 280 ntBASIC-0.39□□□□□ -2.47
HDDC3Q8N4P3 RNU7-104P-201ENST00000459398 79 ntBASIC-0.39□□□□□ -2.47
HDDC3Q8N4P3 MIR5706-201ENST00000579841 80 ntBASIC-0.39□□□□□ -2.47
HDDC3Q8N4P3 RNU6-702P-201ENST00000364982 107 ntBASIC-0.4□□□□□ -2.47
HDDC3Q8N4P3 SNORA32-201ENST00000384072 121 ntBASIC-0.4□□□□□ -2.47
HDDC3Q8N4P3 Y_RNA.571-201ENST00000384753 98 ntBASIC-0.4□□□□□ -2.47
HDDC3Q8N4P3 RNA5SP144-201ENST00000410846 116 ntBASIC-0.4□□□□□ -2.47
HDDC3Q8N4P3 RNA5SP33-201ENST00000516687 98 ntBASIC-0.4□□□□□ -2.47
HDDC3Q8N4P3 Y_RNA.138-201ENST00000363462 102 ntBASIC-0.41□□□□□ -2.48
HDDC3Q8N4P3 Y_RNA.216-201ENST00000364205 93 ntBASIC-0.41□□□□□ -2.48
HDDC3Q8N4P3 RNU6-978P-201ENST00000364371 103 ntBASIC-0.41□□□□□ -2.48
HDDC3Q8N4P3 AC244505.6-201ENST00000452829 130 ntBASIC-0.41□□□□□ -2.48
HDDC3Q8N4P3 RNU7-165P-201ENST00000458864 60 ntBASIC-0.41□□□□□ -2.48
HDDC3Q8N4P3 MIR4744-201ENST00000581563 82 ntBASIC-0.41□□□□□ -2.48
HDDC3Q8N4P3 MIR3171-201ENST00000584270 74 ntBASIC-0.41□□□□□ -2.48
HDDC3Q8N4P3 AC098479.1-201ENST00000609225 154 ntBASIC-0.41□□□□□ -2.48
HDDC3Q8N4P3 SNORA70.25-201ENST00000612741 95 ntBASIC-0.41□□□□□ -2.48
HDDC3Q8N4P3 AL162376.1-201ENST00000624117 175 ntBASIC-0.41□□□□□ -2.48
HDDC3Q8N4P3 Y_RNA.119-201ENST00000363301 96 ntBASIC-0.42□□□□□ -2.48
HDDC3Q8N4P3 RNU6-756P-201ENST00000383997 107 ntBASIC-0.42□□□□□ -2.48
HDDC3Q8N4P3 Y_RNA.470-201ENST00000384307 117 ntBASIC-0.42□□□□□ -2.48
HDDC3Q8N4P3 MIR224-201ENST00000384889 81 ntBASIC-0.42□□□□□ -2.48
HDDC3Q8N4P3 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.42□□□□□ -2.48
HDDC3Q8N4P3 AC138749.4-201ENST00000563970 127 ntBASIC-0.42□□□□□ -2.48
HDDC3Q8N4P3 MIR548H5-201ENST00000580314 60 ntBASIC-0.42□□□□□ -2.48
HDDC3Q8N4P3 MIR4282-201ENST00000583613 67 ntBASIC-0.42□□□□□ -2.48
HDDC3Q8N4P3 U6.104-201ENST00000637979 90 ntBASIC-0.42□□□□□ -2.48
HDDC3Q8N4P3 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.42□□□□□ -2.48
HDDC3Q8N4P3 RNA5SP331-201ENST00000364986 107 ntBASIC-0.43□□□□□ -2.48
HDDC3Q8N4P3 RNU2-60P-201ENST00000517290 128 ntBASIC-0.43□□□□□ -2.48
HDDC3Q8N4P3 MIR548AD-201ENST00000584780 82 ntBASIC-0.43□□□□□ -2.48
HDDC3Q8N4P3 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-0.43□□□□□ -2.48
HDDC3Q8N4P3 AC073869.9-201ENST00000641610 120 ntBASIC-0.43□□□□□ -2.48
HDDC3Q8N4P3 MIR335-201ENST00000362173 94 ntBASIC-0.44□□□□□ -2.48
HDDC3Q8N4P3 Y_RNA.202-201ENST00000364083 110 ntBASIC-0.44□□□□□ -2.48
HDDC3Q8N4P3 snoU13.11-201ENST00000459219 104 ntBASIC-0.44□□□□□ -2.48
HDDC3Q8N4P3 RNU7-137P-201ENST00000516788 62 ntBASIC-0.44□□□□□ -2.48
HDDC3Q8N4P3 RNU7-161P-201ENST00000517289 62 ntBASIC-0.44□□□□□ -2.48
HDDC3Q8N4P3 RNU7-10P-201ENST00000607194 63 ntBASIC-0.44□□□□□ -2.48
HDDC3Q8N4P3 MIR409-201ENST00000362237 79 ntBASIC-0.45□□□□□ -2.48
HDDC3Q8N4P3 SNORA25.7-201ENST00000364375 127 ntBASIC-0.45□□□□□ -2.48
HDDC3Q8N4P3 RNU6-985P-201ENST00000410182 104 ntBASIC-0.45□□□□□ -2.48
HDDC3Q8N4P3 AC108059.2-201ENST00000434626 151 ntBASIC-0.45□□□□□ -2.48
HDDC3Q8N4P3 SNORD67.1-201ENST00000516618 108 ntBASIC-0.45□□□□□ -2.48
HDDC3Q8N4P3 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-0.45□□□□□ -2.48
HDDC3Q8N4P3 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-0.46□□□□□ -2.48
HDDC3Q8N4P3 RNU6-578P-201ENST00000390980 103 ntBASIC-0.47□□□□□ -2.48
HDDC3Q8N4P3 SNORA75.1-201ENST00000391130 148 ntBASIC-0.47□□□□□ -2.48
HDDC3Q8N4P3 SNORD4A-201ENST00000459174 72 ntBASIC-0.47□□□□□ -2.48
HDDC3Q8N4P3 Y_RNA.797-201ENST00000515977 94 ntBASIC-0.47□□□□□ -2.48
HDDC3Q8N4P3 RNU6-1137P-201ENST00000517073 99 ntBASIC-0.47□□□□□ -2.48
HDDC3Q8N4P3 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.47□□□□□ -2.48
HDDC3Q8N4P3 AC006504.6-201ENST00000590142 199 ntBASIC-0.47□□□□□ -2.48
HDDC3Q8N4P3 SNORD115-2-201ENST00000362842 82 ntBASIC-0.48□□□□□ -2.49
HDDC3Q8N4P3 SNORD114-10-201ENST00000363409 72 ntBASIC-0.48□□□□□ -2.49
HDDC3Q8N4P3 SNORD115-20-201ENST00000365099 82 ntBASIC-0.48□□□□□ -2.49
HDDC3Q8N4P3 SNORD114-12-201ENST00000365400 75 ntBASIC-0.48□□□□□ -2.49
HDDC3Q8N4P3 Y_RNA.366-201ENST00000365540 102 ntBASIC-0.48□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 180.5 ms