Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AL513423.1-201ENST00000621695 132 ntBASIC2.66□□□□□ -1.98
NPAS3Q8IXF0 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
NPAS3Q8IXF0 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.65□□□□□ -1.99
NPAS3Q8IXF0 AL596028.1-201ENST00000326971 197 ntBASIC2.65□□□□□ -1.99
NPAS3Q8IXF0 MIR597-201ENST00000384968 97 ntBASIC2.65□□□□□ -1.99
NPAS3Q8IXF0 RNU7-41P-201ENST00000515917 61 ntBASIC2.65□□□□□ -1.99
NPAS3Q8IXF0 RNU6-1194P-201ENST00000516208 104 ntBASIC2.65□□□□□ -1.99
NPAS3Q8IXF0 RNU11-2P-201ENST00000516898 142 ntBASIC2.65□□□□□ -1.99
NPAS3Q8IXF0 RNU6-1057P-201ENST00000517162 102 ntBASIC2.65□□□□□ -1.99
NPAS3Q8IXF0 MIR4773-1-201ENST00000637203 78 ntBASIC2.65□□□□□ -1.99
NPAS3Q8IXF0 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.65□□□□□ -1.99
NPAS3Q8IXF0 RNA5SP139-201ENST00000364340 117 ntBASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 AC011753.1-201ENST00000451001 220 ntBASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 AC009474.2-201ENST00000451383 136 ntBASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 snoU13.26-201ENST00000459452 105 ntBASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 SNORA25.16-201ENST00000516741 121 ntBASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 RNA5SP437-201ENST00000517249 129 ntBASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 AC121758.2-201ENST00000553271 193 ntBASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 MIR4709-201ENST00000577272 72 ntBASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 MIR4696-201ENST00000581431 70 ntBASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 MIR6733-201ENST00000635723 61 ntBASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
NPAS3Q8IXF0 RNU6-664P-201ENST00000362381 107 ntBASIC2.63□□□□□ -1.99
NPAS3Q8IXF0 RNU1-58P-201ENST00000362413 163 ntBASIC2.63□□□□□ -1.99
NPAS3Q8IXF0 SNORD113-4-201ENST00000364802 75 ntBASIC2.63□□□□□ -1.99
NPAS3Q8IXF0 SNORD101-201ENST00000384027 73 ntBASIC2.63□□□□□ -1.99
NPAS3Q8IXF0 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.63□□□□□ -1.99
NPAS3Q8IXF0 AC099513.1-201ENST00000490423 301 ntBASIC2.63□□□□□ -1.99
NPAS3Q8IXF0 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.63□□□□□ -1.99
NPAS3Q8IXF0 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC2.63□□□□□ -1.99
NPAS3Q8IXF0 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.63□□□□□ -1.99
NPAS3Q8IXF0 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.62□□□□□ -1.99
NPAS3Q8IXF0 SNORA25.5-201ENST00000363782 126 ntBASIC2.62□□□□□ -1.99
NPAS3Q8IXF0 RNU6-654P-201ENST00000364373 107 ntBASIC2.62□□□□□ -1.99
NPAS3Q8IXF0 SNORA24B-201ENST00000384176 131 ntBASIC2.62□□□□□ -1.99
NPAS3Q8IXF0 MIR6740-201ENST00000618268 113 ntBASIC2.62□□□□□ -1.99
NPAS3Q8IXF0 U6.100-201ENST00000636230 99 ntBASIC2.62□□□□□ -1.99
NPAS3Q8IXF0 AC023934.1-201ENST00000574529 2389 ntBASIC2.62□□□□□ -1.99
NPAS3Q8IXF0 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
NPAS3Q8IXF0 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.61□□□□□ -1.99
NPAS3Q8IXF0 HMGN2P35-201ENST00000412164 270 ntBASIC2.61□□□□□ -1.99
NPAS3Q8IXF0 TRAJ51-201ENST00000504127 63 ntBASIC2.61□□□□□ -1.99
NPAS3Q8IXF0 MIR7843-201ENST00000622274 79 ntBASIC2.61□□□□□ -1.99
NPAS3Q8IXF0 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
NPAS3Q8IXF0 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
NPAS3Q8IXF0 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 RNU6-668P-201ENST00000364180 107 ntBASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 RNU6-461P-201ENST00000364195 107 ntBASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 SNORD114-30-201ENST00000364448 72 ntBASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 RNU11-3P-201ENST00000391111 133 ntBASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 AL359511.1-201ENST00000402970 211 ntBASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 RNA5SP425-201ENST00000410336 112 ntBASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 snoU13.15-201ENST00000459407 104 ntBASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 PRELID3BP2-201ENST00000605362 201 ntBASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 IST1-227ENST00000626438 126 ntTSL 5 BASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.6□□□□□ -1.99
NPAS3Q8IXF0 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
NPAS3Q8IXF0 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.59□□□□□ -1.99
NPAS3Q8IXF0 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.59□□□□□ -1.99
NPAS3Q8IXF0 MIR504-201ENST00000385065 83 ntBASIC2.59□□□□□ -1.99
NPAS3Q8IXF0 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.59□□□□□ -1.99
NPAS3Q8IXF0 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
NPAS3Q8IXF0 U8.13-201ENST00000390842 128 ntBASIC2.59□□□□□ -1.99
NPAS3Q8IXF0 RN7SKP223-201ENST00000410582 62 ntBASIC2.59□□□□□ -1.99
NPAS3Q8IXF0 RNU4-88P-201ENST00000411220 86 ntBASIC2.59□□□□□ -1.99
NPAS3Q8IXF0 RNU6-274P-201ENST00000459566 107 ntBASIC2.59□□□□□ -1.99
NPAS3Q8IXF0 AC026271.5-201ENST00000577873 130 ntBASIC2.59□□□□□ -1.99
NPAS3Q8IXF0 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
NPAS3Q8IXF0 MIR30D-201ENST00000362283 70 ntBASIC2.58□□□□□ -2
NPAS3Q8IXF0 RNU4-58P-201ENST00000363192 141 ntBASIC2.58□□□□□ -2
NPAS3Q8IXF0 Y_RNA.536-201ENST00000384621 113 ntBASIC2.58□□□□□ -2
NPAS3Q8IXF0 RNU6-237P-201ENST00000515985 71 ntBASIC2.58□□□□□ -2
NPAS3Q8IXF0 RNVU1-2-201ENST00000516326 135 ntBASIC2.58□□□□□ -2
NPAS3Q8IXF0 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
NPAS3Q8IXF0 RNU6-940P-201ENST00000363433 104 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 RNU6-382P-201ENST00000365181 106 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 RNU6-53P-201ENST00000365367 106 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 MIR520A-201ENST00000384862 85 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 MIR451A-201ENST00000385059 72 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 MIR563-201ENST00000385080 79 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 SNORD100-201ENST00000408573 76 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 RNU6-1165P-201ENST00000410119 107 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 AC244098.3-201ENST00000424803 96 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.57□□□□□ -2
NPAS3Q8IXF0 snoU13.27-201ENST00000459278 104 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 Y_RNA.809-201ENST00000516058 95 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 RNU6-542P-201ENST00000516405 103 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 MIR4491-201ENST00000581087 68 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 MIR4769-201ENST00000584126 77 ntBASIC2.57□□□□□ -2
NPAS3Q8IXF0 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.57□□□□□ -2
NPAS3Q8IXF0 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.57□□□□□ -2
NPAS3Q8IXF0 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
NPAS3Q8IXF0 MIR424-201ENST00000362227 98 ntBASIC2.56□□□□□ -2
NPAS3Q8IXF0 SNORD21-201ENST00000383953 95 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 151.6 ms