Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU4-36P-201ENST00000364294 144 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 RNU6-1040P-201ENST00000383974 107 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.445-201ENST00000384168 102 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.542-201ENST00000384641 111 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 MIR216B-201ENST00000390186 82 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 AF228730.3-201ENST00000436691 102 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 RNU7-48P-201ENST00000458875 63 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 RNA5SP33-201ENST00000516687 98 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 AC103591.3-201ENST00000608684 209 ntBASIC-0.95□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.80-201ENST00000362996 102 ntBASIC-0.96□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.96□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.485-201ENST00000384395 102 ntBASIC-0.96□□□□□ -2.56
CCDC88AQ3V6T2 RNU6-370P-201ENST00000411008 104 ntBASIC-0.96□□□□□ -2.56
CCDC88AQ3V6T2 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.96□□□□□ -2.56
CCDC88AQ3V6T2 RNU6-1299P-201ENST00000516316 100 ntBASIC-0.96□□□□□ -2.56
CCDC88AQ3V6T2 RNU6-1213P-201ENST00000517075 94 ntBASIC-0.96□□□□□ -2.56
CCDC88AQ3V6T2 MIR3129-201ENST00000581095 76 ntBASIC-0.96□□□□□ -2.56
CCDC88AQ3V6T2 SNORA22.1-201ENST00000362701 134 ntBASIC-0.97□□□□□ -2.56
CCDC88AQ3V6T2 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.97□□□□□ -2.56
CCDC88AQ3V6T2 U8.6-201ENST00000364939 135 ntBASIC-0.97□□□□□ -2.56
CCDC88AQ3V6T2 RNU6-937P-201ENST00000384325 106 ntBASIC-0.97□□□□□ -2.56
CCDC88AQ3V6T2 MIR519A1-201ENST00000385257 85 ntBASIC-0.97□□□□□ -2.56
CCDC88AQ3V6T2 DEFB117-201ENST00000602356 141 ntBASIC-0.97□□□□□ -2.56
CCDC88AQ3V6T2 Y_RNA.119-201ENST00000363301 96 ntBASIC-0.97□□□□□ -2.57
CCDC88AQ3V6T2 SNORD115-44-201ENST00000365391 82 ntBASIC-0.97□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-890P-201ENST00000384121 107 ntBASIC-0.97□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.463-201ENST00000384271 102 ntBASIC-0.97□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-455P-201ENST00000384681 107 ntBASIC-0.97□□□□□ -2.57
CCDC88AQ3V6T2 SNORD116-6-201ENST00000384711 96 ntBASIC-0.97□□□□□ -2.57
CCDC88AQ3V6T2 SNORD115-46-201ENST00000390982 71 ntBASIC-0.97□□□□□ -2.57
CCDC88AQ3V6T2 AC021146.6-201ENST00000514659 117 ntBASIC-0.97□□□□□ -2.57
CCDC88AQ3V6T2 AC090971.5-201ENST00000621102 293 ntBASIC-0.97□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.389-201ENST00000383924 113 ntBASIC-0.98□□□□□ -2.57
CCDC88AQ3V6T2 MIR9-2-201ENST00000384838 87 ntBASIC-0.98□□□□□ -2.57
CCDC88AQ3V6T2 AC096644.2-201ENST00000429278 159 ntBASIC-0.98□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-720P-201ENST00000516363 108 ntBASIC-0.98□□□□□ -2.57
CCDC88AQ3V6T2 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC-0.98□□□□□ -2.57
CCDC88AQ3V6T2 MIR3688-2-201ENST00000636963 87 ntBASIC-0.98□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.531-201ENST00000384589 121 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 MIR599-201ENST00000385069 95 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 MIR519E-201ENST00000385075 84 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 RNA5SP484-201ENST00000458857 111 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-507P-201ENST00000516045 100 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-191P-201ENST00000516295 94 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 MIR6851-201ENST00000617060 67 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.199-201ENST00000364014 102 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 RNU4-10P-201ENST00000364383 140 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.318-201ENST00000365131 97 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-310P-201ENST00000384655 107 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 SNORD56B-201ENST00000384713 71 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.581-201ENST00000391017 97 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 RNU7-13P-201ENST00000516413 62 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.691-201ENST00000516611 103 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.715-201ENST00000517082 110 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 MIR4306-201ENST00000583390 91 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 AC006006.1-201ENST00000603082 144 ntBASIC-0.99□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.39-201ENST00000362620 98 ntBASIC-1□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.252-201ENST00000364556 101 ntBASIC-1□□□□□ -2.57
CCDC88AQ3V6T2 RNU4-24P-201ENST00000364565 139 ntBASIC-1□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.326-201ENST00000365176 113 ntBASIC-1□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.375-201ENST00000365625 101 ntBASIC-1□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-1104P-201ENST00000384723 104 ntBASIC-1□□□□□ -2.57
CCDC88AQ3V6T2 MIR559-201ENST00000385188 96 ntBASIC-1□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-881P-201ENST00000516813 102 ntBASIC-1□□□□□ -2.57
CCDC88AQ3V6T2 SNORD113-8-201ENST00000363497 74 ntBASIC-1.01□□□□□ -2.57
CCDC88AQ3V6T2 RNU4-16P-201ENST00000364737 141 ntBASIC-1.01□□□□□ -2.57
CCDC88AQ3V6T2 RNU1-115P-201ENST00000365329 160 ntBASIC-1.01□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.474-201ENST00000384341 102 ntBASIC-1.01□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-900P-201ENST00000384498 102 ntBASIC-1.01□□□□□ -2.57
CCDC88AQ3V6T2 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-1.01□□□□□ -2.57
CCDC88AQ3V6T2 AL606845.1-201ENST00000404881 255 ntBASIC-1.01□□□□□ -2.57
CCDC88AQ3V6T2 MIR539-201ENST00000365690 78 ntBASIC-1.01□□□□□ -2.57
CCDC88AQ3V6T2 MIR206-201ENST00000384872 86 ntBASIC-1.01□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-1228P-201ENST00000391014 107 ntBASIC-1.01□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-559P-201ENST00000516151 98 ntBASIC-1.01□□□□□ -2.57
CCDC88AQ3V6T2 SCARNA15-202ENST00000516881 127 ntBASIC-1.01□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.44-201ENST00000362676 108 ntBASIC-1.02□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-901P-201ENST00000384593 106 ntBASIC-1.02□□□□□ -2.57
CCDC88AQ3V6T2 RNU6ATAC19P-201ENST00000408096 110 ntBASIC-1.02□□□□□ -2.57
CCDC88AQ3V6T2 MIR1270-201ENST00000459320 83 ntBASIC-1.02□□□□□ -2.57
CCDC88AQ3V6T2 AC069439.1-201ENST00000494739 167 ntBASIC-1.02□□□□□ -2.57
CCDC88AQ3V6T2 RNA5SP470-201ENST00000516463 106 ntBASIC-1.02□□□□□ -2.57
CCDC88AQ3V6T2 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC-1.02□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.86-201ENST00000363020 111 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.279-201ENST00000364763 95 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-47P-201ENST00000383866 107 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.526-201ENST00000384572 110 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.596-201ENST00000410462 109 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 MTND4P17-201ENST00000470444 350 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 AC021146.9-201ENST00000512503 156 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 YWHAEP2-201ENST00000580066 112 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.214-201ENST00000364201 112 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.387-201ENST00000383918 102 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 RNU6-1046P-201ENST00000516538 107 ntBASIC-1.03□□□□□ -2.57
CCDC88AQ3V6T2 MIR4473-201ENST00000583731 91 ntBASIC-1.03□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 189.1 ms