Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 SNORA22.1-201ENST00000362701 134 ntBASIC0.64□□□□□ -2.31
SHHQ15465 RNY1P6-201ENST00000384193 109 ntBASIC0.64□□□□□ -2.31
SHHQ15465 AL158147.1-201ENST00000443970 75 ntBASIC0.64□□□□□ -2.31
SHHQ15465 RPL39P39-201ENST00000455840 151 ntBASIC0.64□□□□□ -2.31
SHHQ15465 RNU7-21P-201ENST00000459430 62 ntBASIC0.64□□□□□ -2.31
SHHQ15465 AC113410.1-201ENST00000505029 247 ntBASIC0.64□□□□□ -2.31
SHHQ15465 MIR548AE2-201ENST00000583456 67 ntBASIC0.64□□□□□ -2.31
SHHQ15465 AC021443.1-201ENST00000604478 211 ntBASIC0.64□□□□□ -2.31
SHHQ15465 AC020891.4-201ENST00000605745 93 ntBASIC0.64□□□□□ -2.31
SHHQ15465 Y_RNA.773-201ENST00000607168 90 ntBASIC0.64□□□□□ -2.31
SHHQ15465 MIR302B-201ENST00000362188 73 ntBASIC0.63□□□□□ -2.31
SHHQ15465 MIR608-201ENST00000384820 100 ntBASIC0.63□□□□□ -2.31
SHHQ15465 MIR100-201ENST00000385259 80 ntBASIC0.63□□□□□ -2.31
SHHQ15465 SNORA40-201ENST00000388090 126 ntBASIC0.63□□□□□ -2.31
SHHQ15465 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.63□□□□□ -2.31
SHHQ15465 Y_RNA.617-201ENST00000410920 90 ntBASIC0.63□□□□□ -2.31
SHHQ15465 RNU4-61P-201ENST00000411243 107 ntBASIC0.63□□□□□ -2.31
SHHQ15465 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.63□□□□□ -2.31
SHHQ15465 RNU7-164P-201ENST00000459221 62 ntBASIC0.63□□□□□ -2.31
SHHQ15465 RNU6-772P-201ENST00000516042 105 ntBASIC0.63□□□□□ -2.31
SHHQ15465 SNORD33.1-201ENST00000516213 88 ntBASIC0.63□□□□□ -2.31
SHHQ15465 RNU6-1061P-201ENST00000516530 99 ntBASIC0.63□□□□□ -2.31
SHHQ15465 AC133485.4-201ENST00000561835 220 ntBASIC0.63□□□□□ -2.31
SHHQ15465 AC138907.4-201ENST00000570107 226 ntBASIC0.63□□□□□ -2.31
SHHQ15465 MIR4305-201ENST00000583252 102 ntBASIC0.63□□□□□ -2.31
SHHQ15465 AC105081.1-201ENST00000617727 106 ntBASIC0.63□□□□□ -2.31
SHHQ15465 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.63□□□□□ -2.31
SHHQ15465 AP001340.1-201ENST00000624405 217 ntBASIC0.63□□□□□ -2.31
SHHQ15465 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
SHHQ15465 MIR30D-201ENST00000362283 70 ntBASIC0.62□□□□□ -2.31
SHHQ15465 Y_RNA.298-201ENST00000364960 107 ntBASIC0.62□□□□□ -2.31
SHHQ15465 SNORA1.2-201ENST00000365189 134 ntBASIC0.62□□□□□ -2.31
SHHQ15465 Y_RNA.343-201ENST00000365354 112 ntBASIC0.62□□□□□ -2.31
SHHQ15465 SNORA18-201ENST00000384416 132 ntBASIC0.62□□□□□ -2.31
SHHQ15465 SNORA2B-201ENST00000384583 137 ntBASIC0.62□□□□□ -2.31
SHHQ15465 Y_RNA.549-201ENST00000384657 102 ntBASIC0.62□□□□□ -2.31
SHHQ15465 MIR588-201ENST00000384900 83 ntBASIC0.62□□□□□ -2.31
SHHQ15465 MIR605-201ENST00000385078 83 ntBASIC0.62□□□□□ -2.31
SHHQ15465 RNU6-1319P-201ENST00000390855 104 ntBASIC0.62□□□□□ -2.31
SHHQ15465 RNU6-747P-201ENST00000390928 104 ntBASIC0.62□□□□□ -2.31
SHHQ15465 RNU6-241P-201ENST00000391148 104 ntBASIC0.62□□□□□ -2.31
SHHQ15465 RNU6-177P-201ENST00000411257 104 ntBASIC0.62□□□□□ -2.31
SHHQ15465 AL606753.1-201ENST00000427435 87 ntBASIC0.62□□□□□ -2.31
SHHQ15465 snoU13.16-201ENST00000459350 104 ntBASIC0.62□□□□□ -2.31
SHHQ15465 PSMC1P5-201ENST00000512850 177 ntBASIC0.62□□□□□ -2.31
SHHQ15465 RNA5SP285-201ENST00000516619 119 ntBASIC0.62□□□□□ -2.31
SHHQ15465 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.62□□□□□ -2.31
SHHQ15465 AC243829.6-201ENST00000612652 106 ntBASIC0.62□□□□□ -2.31
SHHQ15465 AL137067.1-201ENST00000615933 120 ntBASIC0.62□□□□□ -2.31
SHHQ15465 AL035470.1-201ENST00000622571 220 ntBASIC0.62□□□□□ -2.31
SHHQ15465 MIR1255B1-201ENST00000636325 63 ntBASIC0.62□□□□□ -2.31
SHHQ15465 SNORD58C-201ENST00000365223 64 ntBASIC0.61□□□□□ -2.31
SHHQ15465 RNU6-959P-201ENST00000384671 107 ntBASIC0.61□□□□□ -2.31
SHHQ15465 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.61□□□□□ -2.31
SHHQ15465 AC107297.1-201ENST00000459991 176 ntBASIC0.61□□□□□ -2.31
SHHQ15465 RNU6-1333P-201ENST00000516162 93 ntBASIC0.61□□□□□ -2.31
SHHQ15465 RNU6-659P-201ENST00000516454 104 ntBASIC0.61□□□□□ -2.31
SHHQ15465 MIR4514-201ENST00000581410 57 ntBASIC0.61□□□□□ -2.31
SHHQ15465 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.61□□□□□ -2.31
SHHQ15465 AC008608.1-201ENST00000603910 127 ntBASIC0.61□□□□□ -2.31
SHHQ15465 U7.2-201ENST00000607576 63 ntBASIC0.61□□□□□ -2.31
SHHQ15465 SEPT14P17-201ENST00000617978 177 ntBASIC0.61□□□□□ -2.31
SHHQ15465 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.61□□□□□ -2.31
SHHQ15465 RNA5SP48-201ENST00000363969 126 ntBASIC0.6□□□□□ -2.31
SHHQ15465 Y_RNA.344-201ENST00000365381 112 ntBASIC0.6□□□□□ -2.31
SHHQ15465 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
SHHQ15465 RNY1P8-201ENST00000383970 114 ntBASIC0.6□□□□□ -2.31
SHHQ15465 RNU6-616P-201ENST00000384353 107 ntBASIC0.6□□□□□ -2.31
SHHQ15465 MIRLET7F2-201ENST00000385277 83 ntBASIC0.6□□□□□ -2.31
SHHQ15465 U8.15-201ENST00000390947 134 ntBASIC0.6□□□□□ -2.31
SHHQ15465 AL353813.1-201ENST00000440700 253 ntBASIC0.6□□□□□ -2.31
SHHQ15465 RNU7-62P-201ENST00000458856 62 ntBASIC0.6□□□□□ -2.31
SHHQ15465 snoU13.2-201ENST00000459201 104 ntBASIC0.6□□□□□ -2.31
SHHQ15465 RNU7-80P-201ENST00000459562 61 ntBASIC0.6□□□□□ -2.31
SHHQ15465 Y_RNA.692-201ENST00000516627 105 ntBASIC0.6□□□□□ -2.31
SHHQ15465 RNU7-53P-201ENST00000516705 60 ntBASIC0.6□□□□□ -2.31
SHHQ15465 RNU7-70P-201ENST00000516941 66 ntBASIC0.6□□□□□ -2.31
SHHQ15465 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.6□□□□□ -2.31
SHHQ15465 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.6□□□□□ -2.31
SHHQ15465 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.6□□□□□ -2.31
SHHQ15465 AC087741.2-201ENST00000619415 172 ntBASIC0.6□□□□□ -2.31
SHHQ15465 MTND5P18-201ENST00000445624 1801 ntBASIC0.59□□□□□ -2.31
SHHQ15465 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
SHHQ15465 RNY1P13-201ENST00000365030 105 ntBASIC0.59□□□□□ -2.31
SHHQ15465 RNU6-81P-201ENST00000365608 104 ntBASIC0.59□□□□□ -2.31
SHHQ15465 SNORD18B-201ENST00000365659 72 ntBASIC0.59□□□□□ -2.31
SHHQ15465 RNU6-110P-201ENST00000384508 104 ntBASIC0.59□□□□□ -2.31
SHHQ15465 RNU6-429P-201ENST00000384582 108 ntBASIC0.59□□□□□ -2.31
SHHQ15465 Y_RNA.531-201ENST00000384589 121 ntBASIC0.59□□□□□ -2.31
SHHQ15465 RNU6-733P-201ENST00000410759 104 ntBASIC0.59□□□□□ -2.31
SHHQ15465 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.59□□□□□ -2.31
SHHQ15465 RPS3AP1-201ENST00000413190 320 ntBASIC0.59□□□□□ -2.31
SHHQ15465 FABP5P4-201ENST00000437203 171 ntBASIC0.59□□□□□ -2.31
SHHQ15465 RNU7-90P-201ENST00000459216 62 ntBASIC0.59□□□□□ -2.31
SHHQ15465 RNU7-113P-201ENST00000459273 62 ntBASIC0.59□□□□□ -2.31
SHHQ15465 SNORD67.1-201ENST00000516618 108 ntBASIC0.59□□□□□ -2.31
SHHQ15465 RNA5SP33-201ENST00000516687 98 ntBASIC0.59□□□□□ -2.31
SHHQ15465 MIR4771-2-201ENST00000577758 74 ntBASIC0.59□□□□□ -2.31
SHHQ15465 MIR4771-1-201ENST00000582617 74 ntBASIC0.59□□□□□ -2.31
SHHQ15465 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms