Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC103810.7-201ENST00000607821 91 ntBASIC1.82□□□□□ -2.12
RNF4P78317 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.82□□□□□ -2.12
RNF4P78317 Y_RNA.96-201ENST00000363092 109 ntBASIC1.81□□□□□ -2.12
RNF4P78317 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
RNF4P78317 U8.15-201ENST00000390947 134 ntBASIC1.81□□□□□ -2.12
RNF4P78317 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.81□□□□□ -2.12
RNF4P78317 U6.109-201ENST00000636749 87 ntBASIC1.81□□□□□ -2.12
RNF4P78317 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.81□□□□□ -2.12
RNF4P78317 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.8□□□□□ -2.12
RNF4P78317 Y_RNA.190-201ENST00000363964 101 ntBASIC1.8□□□□□ -2.12
RNF4P78317 Y_RNA.388-201ENST00000383919 113 ntBASIC1.8□□□□□ -2.12
RNF4P78317 RNU6-972P-201ENST00000391208 107 ntBASIC1.8□□□□□ -2.12
RNF4P78317 RNU6-613P-201ENST00000410412 108 ntBASIC1.8□□□□□ -2.12
RNF4P78317 AC048334.1-201ENST00000477975 159 ntBASIC1.8□□□□□ -2.12
RNF4P78317 MTND5P40-201ENST00000559945 246 ntBASIC1.8□□□□□ -2.12
RNF4P78317 AC090897.1-201ENST00000580909 226 ntBASIC1.8□□□□□ -2.12
RNF4P78317 MIR4439-201ENST00000583746 80 ntBASIC1.8□□□□□ -2.12
RNF4P78317 RNU6-90P-201ENST00000606352 106 ntBASIC1.8□□□□□ -2.12
RNF4P78317 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.8□□□□□ -2.12
RNF4P78317 MIR494-201ENST00000349529 81 ntBASIC1.79□□□□□ -2.12
RNF4P78317 Y_RNA.168-201ENST00000363740 102 ntBASIC1.79□□□□□ -2.12
RNF4P78317 SNORD38.2-201ENST00000384470 69 ntBASIC1.79□□□□□ -2.12
RNF4P78317 Y_RNA.567-201ENST00000384736 106 ntBASIC1.79□□□□□ -2.12
RNF4P78317 Y_RNA.593-201ENST00000410292 98 ntBASIC1.79□□□□□ -2.12
RNF4P78317 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.79□□□□□ -2.12
RNF4P78317 RN7SKP88-201ENST00000516847 250 ntBASIC1.79□□□□□ -2.12
RNF4P78317 RNU11-2P-201ENST00000516898 142 ntBASIC1.79□□□□□ -2.12
RNF4P78317 AC138749.4-201ENST00000563970 127 ntBASIC1.79□□□□□ -2.12
RNF4P78317 MIR3122-201ENST00000577243 73 ntBASIC1.79□□□□□ -2.12
RNF4P78317 7SK.8-201ENST00000612110 250 ntBASIC1.79□□□□□ -2.12
RNF4P78317 7SK.11-201ENST00000615477 250 ntBASIC1.79□□□□□ -2.12
RNF4P78317 AC012676.2-201ENST00000619258 186 ntBASIC1.79□□□□□ -2.12
RNF4P78317 7SK.13-201ENST00000622040 250 ntBASIC1.79□□□□□ -2.12
RNF4P78317 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
RNF4P78317 RNU6-1244P-201ENST00000363614 108 ntBASIC1.78□□□□□ -2.12
RNF4P78317 Y_RNA.330-201ENST00000365230 109 ntBASIC1.78□□□□□ -2.12
RNF4P78317 MIR1289-2-201ENST00000408360 111 ntBASIC1.78□□□□□ -2.12
RNF4P78317 RNA5SP489-201ENST00000410986 109 ntBASIC1.78□□□□□ -2.12
RNF4P78317 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.78□□□□□ -2.12
RNF4P78317 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.78□□□□□ -2.12
RNF4P78317 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.78□□□□□ -2.12
RNF4P78317 MIR377-201ENST00000362145 69 ntBASIC1.77□□□□□ -2.13
RNF4P78317 Y_RNA.17-201ENST00000362433 111 ntBASIC1.77□□□□□ -2.13
RNF4P78317 RNA5SP133-201ENST00000363368 119 ntBASIC1.77□□□□□ -2.13
RNF4P78317 RNY1P2-201ENST00000364820 117 ntBASIC1.77□□□□□ -2.13
RNF4P78317 SNORA2B-201ENST00000384583 137 ntBASIC1.77□□□□□ -2.13
RNF4P78317 RNU1-98P-201ENST00000458992 160 ntBASIC1.77□□□□□ -2.13
RNF4P78317 RPS29P11-201ENST00000496507 171 ntBASIC1.77□□□□□ -2.13
RNF4P78317 AC008834.1-201ENST00000511612 175 ntBASIC1.77□□□□□ -2.13
RNF4P78317 RNA5SP182-201ENST00000516064 82 ntBASIC1.77□□□□□ -2.13
RNF4P78317 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.77□□□□□ -2.13
RNF4P78317 MT-TF-201ENST00000387314 71 ntBASIC1.76□□□□□ -2.13
RNF4P78317 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
RNF4P78317 U8.13-201ENST00000390842 128 ntBASIC1.76□□□□□ -2.13
RNF4P78317 snoU13.21-201ENST00000459368 105 ntBASIC1.76□□□□□ -2.13
RNF4P78317 SNORA31.2-201ENST00000516019 134 ntBASIC1.76□□□□□ -2.13
RNF4P78317 MIR4500-201ENST00000579472 76 ntBASIC1.76□□□□□ -2.13
RNF4P78317 RNY1P10-201ENST00000363268 113 ntBASIC1.75□□□□□ -2.13
RNF4P78317 MIR583-201ENST00000384846 75 ntBASIC1.75□□□□□ -2.13
RNF4P78317 MIR450A2-201ENST00000385022 100 ntBASIC1.75□□□□□ -2.13
RNF4P78317 SNORA75.2-201ENST00000391138 150 ntBASIC1.75□□□□□ -2.13
RNF4P78317 SNORA75.3-201ENST00000391231 150 ntBASIC1.75□□□□□ -2.13
RNF4P78317 RN7SKP12-201ENST00000516275 143 ntBASIC1.75□□□□□ -2.13
RNF4P78317 AC020891.4-201ENST00000605745 93 ntBASIC1.75□□□□□ -2.13
RNF4P78317 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.75□□□□□ -2.13
RNF4P78317 Y_RNA.173-201ENST00000363776 113 ntBASIC1.74□□□□□ -2.13
RNF4P78317 SNORD116-10-201ENST00000363791 102 ntBASIC1.74□□□□□ -2.13
RNF4P78317 SNORD58A-201ENST00000383875 65 ntBASIC1.74□□□□□ -2.13
RNF4P78317 MIR504-201ENST00000385065 83 ntBASIC1.74□□□□□ -2.13
RNF4P78317 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
RNF4P78317 RNU1-78P-201ENST00000391248 165 ntBASIC1.74□□□□□ -2.13
RNF4P78317 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
RNF4P78317 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.73□□□□□ -2.13
RNF4P78317 HSBP1P2-201ENST00000299671 229 ntBASIC1.73□□□□□ -2.13
RNF4P78317 Y_RNA.119-201ENST00000363301 96 ntBASIC1.73□□□□□ -2.13
RNF4P78317 SNORA40.18-201ENST00000391200 128 ntBASIC1.73□□□□□ -2.13
RNF4P78317 AC015818.7-201ENST00000428754 109 ntBASIC1.73□□□□□ -2.13
RNF4P78317 AC087499.7-201ENST00000441958 109 ntBASIC1.73□□□□□ -2.13
RNF4P78317 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.73□□□□□ -2.13
RNF4P78317 RNU6-295P-201ENST00000516901 104 ntBASIC1.73□□□□□ -2.13
RNF4P78317 MIR4422-201ENST00000581938 83 ntBASIC1.73□□□□□ -2.13
RNF4P78317 RNU6-580P-201ENST00000365159 107 ntBASIC1.72□□□□□ -2.13
RNF4P78317 SNORD93-201ENST00000408813 74 ntBASIC1.72□□□□□ -2.13
RNF4P78317 RNU6-402P-201ENST00000410678 103 ntBASIC1.72□□□□□ -2.13
RNF4P78317 SNORD83.1-201ENST00000411362 77 ntBASIC1.72□□□□□ -2.13
RNF4P78317 AC003989.2-201ENST00000440224 169 ntBASIC1.72□□□□□ -2.13
RNF4P78317 AC024614.2-201ENST00000577584 372 ntBASIC1.72□□□□□ -2.13
RNF4P78317 MIR6845-201ENST00000613182 61 ntBASIC1.72□□□□□ -2.13
RNF4P78317 MIR6715A-201ENST00000615929 79 ntBASIC1.72□□□□□ -2.13
RNF4P78317 AC023934.1-201ENST00000574529 2389 ntBASIC1.71□□□□□ -2.14
RNF4P78317 RNA5SP173-201ENST00000364857 136 ntBASIC1.71□□□□□ -2.14
RNF4P78317 Y_RNA.363-201ENST00000365529 113 ntBASIC1.71□□□□□ -2.14
RNF4P78317 SNORA72.6-201ENST00000384520 129 ntBASIC1.71□□□□□ -2.14
RNF4P78317 MIR181B2-201ENST00000385004 89 ntBASIC1.71□□□□□ -2.14
RNF4P78317 MIR934-201ENST00000401241 83 ntBASIC1.71□□□□□ -2.14
RNF4P78317 SUMO2P12-201ENST00000405924 140 ntBASIC1.71□□□□□ -2.14
RNF4P78317 RNU6-1054P-201ENST00000411293 104 ntBASIC1.71□□□□□ -2.14
RNF4P78317 BX276092.1-201ENST00000427368 251 ntBASIC1.71□□□□□ -2.14
RNF4P78317 SNORA25.16-201ENST00000516741 121 ntBASIC1.71□□□□□ -2.14
RNF4P78317 AC104984.5-201ENST00000586878 94 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 207.6 ms