Protein–RNA interactions for Protein: P49917

LIG4, DNA ligase 4, humanhuman

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4P49917 Y_RNA.32-201ENST00000362589 110 ntBASIC0.33□□□□□ -2.36
LIG4P49917 SNORA36.1-201ENST00000363424 132 ntBASIC0.33□□□□□ -2.36
LIG4P49917 SNORD118-201ENST00000363593 134 ntBASIC0.33□□□□□ -2.36
LIG4P49917 RNU6-379P-201ENST00000363813 104 ntBASIC0.33□□□□□ -2.36
LIG4P49917 Y_RNA.233-201ENST00000364407 101 ntBASIC0.33□□□□□ -2.36
LIG4P49917 AL022718.1-201ENST00000412004 84 ntBASIC0.33□□□□□ -2.36
LIG4P49917 RNA5SP134-201ENST00000516492 96 ntBASIC0.33□□□□□ -2.36
LIG4P49917 SNORA25.16-201ENST00000516741 121 ntBASIC0.33□□□□□ -2.36
LIG4P49917 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.33□□□□□ -2.36
LIG4P49917 SNORD115-2-201ENST00000362842 82 ntBASIC0.32□□□□□ -2.36
LIG4P49917 SNORD44.1-201ENST00000363202 61 ntBASIC0.32□□□□□ -2.36
LIG4P49917 RNU6-312P-201ENST00000364629 107 ntBASIC0.32□□□□□ -2.36
LIG4P49917 RNU6-818P-201ENST00000364837 108 ntBASIC0.32□□□□□ -2.36
LIG4P49917 SNORD115-20-201ENST00000365099 82 ntBASIC0.32□□□□□ -2.36
LIG4P49917 Y_RNA.497-201ENST00000384447 98 ntBASIC0.32□□□□□ -2.36
LIG4P49917 Y_RNA.540-201ENST00000384638 111 ntBASIC0.32□□□□□ -2.36
LIG4P49917 AL078595.1-201ENST00000404458 226 ntBASIC0.32□□□□□ -2.36
LIG4P49917 RNU2-35P-201ENST00000516446 142 ntBASIC0.32□□□□□ -2.36
LIG4P49917 RNU7-121P-201ENST00000516604 62 ntBASIC0.32□□□□□ -2.36
LIG4P49917 SNORA31.14-201ENST00000516728 116 ntBASIC0.32□□□□□ -2.36
LIG4P49917 RNU7-35P-201ENST00000517174 62 ntBASIC0.32□□□□□ -2.36
LIG4P49917 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.32□□□□□ -2.36
LIG4P49917 MIR3658-201ENST00000636291 56 ntBASIC0.32□□□□□ -2.36
LIG4P49917 Y_RNA.174-201ENST00000363781 105 ntBASIC0.31□□□□□ -2.36
LIG4P49917 RNU6-690P-201ENST00000365242 106 ntBASIC0.31□□□□□ -2.36
LIG4P49917 Y_RNA.337-201ENST00000365312 102 ntBASIC0.31□□□□□ -2.36
LIG4P49917 Y_RNA.366-201ENST00000365540 102 ntBASIC0.31□□□□□ -2.36
LIG4P49917 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.31□□□□□ -2.36
LIG4P49917 SNRPGP12-201ENST00000449481 213 ntBASIC0.31□□□□□ -2.36
LIG4P49917 RNA5SP33-201ENST00000516687 98 ntBASIC0.31□□□□□ -2.36
LIG4P49917 MIR6779-201ENST00000617283 64 ntBASIC0.31□□□□□ -2.36
LIG4P49917 AC078938.1-201ENST00000620993 318 ntBASIC0.31□□□□□ -2.36
LIG4P49917 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.31□□□□□ -2.36
LIG4P49917 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
LIG4P49917 Y_RNA.120-201ENST00000363304 110 ntBASIC0.3□□□□□ -2.36
LIG4P49917 RNU6-682P-201ENST00000363843 106 ntBASIC0.3□□□□□ -2.36
LIG4P49917 RNU4-84P-201ENST00000364200 139 ntBASIC0.3□□□□□ -2.36
LIG4P49917 Y_RNA.251-201ENST00000364551 99 ntBASIC0.3□□□□□ -2.36
LIG4P49917 RNU6-1327P-201ENST00000365302 105 ntBASIC0.3□□□□□ -2.36
LIG4P49917 Y_RNA.536-201ENST00000384621 113 ntBASIC0.3□□□□□ -2.36
LIG4P49917 RNU6-588P-201ENST00000410281 105 ntBASIC0.3□□□□□ -2.36
LIG4P49917 Y_RNA.793-201ENST00000411222 111 ntBASIC0.3□□□□□ -2.36
LIG4P49917 Y_RNA.651-201ENST00000459380 103 ntBASIC0.3□□□□□ -2.36
LIG4P49917 Y_RNA.697-201ENST00000516776 113 ntBASIC0.3□□□□□ -2.36
LIG4P49917 MTND5P34-201ENST00000568888 325 ntBASIC0.3□□□□□ -2.36
LIG4P49917 AL359881.1-201ENST00000602916 267 ntBASIC0.3□□□□□ -2.36
LIG4P49917 RNU6-291P-201ENST00000384720 107 ntBASIC0.29□□□□□ -2.36
LIG4P49917 RNU6-535P-201ENST00000384722 107 ntBASIC0.29□□□□□ -2.36
LIG4P49917 SNORA75.5-201ENST00000391291 81 ntBASIC0.29□□□□□ -2.36
LIG4P49917 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.29□□□□□ -2.36
LIG4P49917 Y_RNA.644-201ENST00000459006 113 ntBASIC0.29□□□□□ -2.36
LIG4P49917 AC108740.1-201ENST00000498629 225 ntBASIC0.29□□□□□ -2.36
LIG4P49917 RNU6-863P-201ENST00000515989 104 ntBASIC0.29□□□□□ -2.36
LIG4P49917 Y_RNA.674-201ENST00000516362 113 ntBASIC0.29□□□□□ -2.36
LIG4P49917 MIR924-201ENST00000638017 53 ntBASIC0.29□□□□□ -2.36
LIG4P49917 Y_RNA.240-201ENST00000364469 95 ntBASIC0.28□□□□□ -2.36
LIG4P49917 Y_RNA.297-201ENST00000364950 91 ntBASIC0.28□□□□□ -2.36
LIG4P49917 SNORA32-201ENST00000384072 121 ntBASIC0.28□□□□□ -2.36
LIG4P49917 Y_RNA.489-201ENST00000384410 101 ntBASIC0.28□□□□□ -2.36
LIG4P49917 MT-TG-201ENST00000387429 68 ntBASIC0.28□□□□□ -2.36
LIG4P49917 RNU6-138P-201ENST00000515952 107 ntBASIC0.28□□□□□ -2.36
LIG4P49917 RNU6-135P-201ENST00000516769 101 ntBASIC0.28□□□□□ -2.36
LIG4P49917 DEFB131E-201ENST00000532329 154 ntBASIC0.28□□□□□ -2.36
LIG4P49917 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.28□□□□□ -2.36
LIG4P49917 MIR6844-201ENST00000637122 62 ntBASIC0.28□□□□□ -2.36
LIG4P49917 RNA5SP245-201ENST00000364239 121 ntBASIC0.27□□□□□ -2.37
LIG4P49917 Y_RNA.357-201ENST00000365487 109 ntBASIC0.27□□□□□ -2.37
LIG4P49917 Y_RNA.441-201ENST00000384123 112 ntBASIC0.27□□□□□ -2.37
LIG4P49917 RNU6-239P-201ENST00000390990 99 ntBASIC0.27□□□□□ -2.37
LIG4P49917 MTATP6P21-201ENST00000440681 189 ntBASIC0.27□□□□□ -2.37
LIG4P49917 SNORA62.5-201ENST00000516634 120 ntBASIC0.27□□□□□ -2.37
LIG4P49917 RNA5SP268-201ENST00000516828 124 ntBASIC0.27□□□□□ -2.37
LIG4P49917 RNU6-388P-201ENST00000517012 105 ntBASIC0.27□□□□□ -2.37
LIG4P49917 RNU6-389P-201ENST00000517048 105 ntBASIC0.27□□□□□ -2.37
LIG4P49917 SNORA81.3-201ENST00000517283 198 ntBASIC0.27□□□□□ -2.37
LIG4P49917 MIR4305-201ENST00000583252 102 ntBASIC0.27□□□□□ -2.37
LIG4P49917 MIR548AE2-201ENST00000583456 67 ntBASIC0.27□□□□□ -2.37
LIG4P49917 AC011603.4-201ENST00000611325 277 ntBASIC0.27□□□□□ -2.37
LIG4P49917 RNA5SP62-201ENST00000363457 110 ntBASIC0.26□□□□□ -2.37
LIG4P49917 Y_RNA.188-201ENST00000363952 111 ntBASIC0.26□□□□□ -2.37
LIG4P49917 RNU6-309P-201ENST00000364573 106 ntBASIC0.26□□□□□ -2.37
LIG4P49917 RNU7-197P-201ENST00000458836 62 ntBASIC0.26□□□□□ -2.37
LIG4P49917 AC074198.2-201ENST00000508153 258 ntBASIC0.26□□□□□ -2.37
LIG4P49917 RNU6-240P-201ENST00000516098 97 ntBASIC0.26□□□□□ -2.37
LIG4P49917 Y_RNA.686-201ENST00000516548 134 ntBASIC0.26□□□□□ -2.37
LIG4P49917 RNU6-861P-201ENST00000516745 106 ntBASIC0.26□□□□□ -2.37
LIG4P49917 RNU7-137P-201ENST00000516788 62 ntBASIC0.26□□□□□ -2.37
LIG4P49917 RNU6-1271P-201ENST00000517049 105 ntBASIC0.26□□□□□ -2.37
LIG4P49917 AC138749.4-201ENST00000563970 127 ntBASIC0.26□□□□□ -2.37
LIG4P49917 MIR3646-201ENST00000578301 84 ntBASIC0.26□□□□□ -2.37
LIG4P49917 AC072026.1-201ENST00000605023 201 ntBASIC0.26□□□□□ -2.37
LIG4P49917 MIR6828-201ENST00000636181 60 ntBASIC0.26□□□□□ -2.37
LIG4P49917 RNA5SP133-201ENST00000363368 119 ntBASIC0.25□□□□□ -2.37
LIG4P49917 RNU6-1229P-201ENST00000364295 107 ntBASIC0.25□□□□□ -2.37
LIG4P49917 RNU6-200P-201ENST00000364743 107 ntBASIC0.25□□□□□ -2.37
LIG4P49917 Y_RNA.531-201ENST00000384589 121 ntBASIC0.25□□□□□ -2.37
LIG4P49917 SUMO1P3-201ENST00000439961 304 ntBASIC0.25□□□□□ -2.37
LIG4P49917 RNU7-120P-201ENST00000459334 63 ntBASIC0.25□□□□□ -2.37
LIG4P49917 RNU7-123P-201ENST00000515911 60 ntBASIC0.25□□□□□ -2.37
LIG4P49917 RNU6-1194P-201ENST00000516208 104 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 222.3 ms