Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC104692.1-201ENST00000472406 90 ntBASIC-0.16□□□□□ -2.44
RFX3P48380 RNU6-531P-201ENST00000516694 104 ntBASIC-0.16□□□□□ -2.44
RFX3P48380 MIR5706-201ENST00000579841 80 ntBASIC-0.16□□□□□ -2.44
RFX3P48380 MTND5P32-201ENST00000560711 1802 ntBASIC-0.16□□□□□ -2.44
RFX3P48380 RNA5SP133-201ENST00000363368 119 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 SNORA25.7-201ENST00000364375 127 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 RNU6-652P-201ENST00000365488 107 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 RNA5SP144-201ENST00000410846 116 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 AL022718.1-201ENST00000412004 84 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 AC244505.6-201ENST00000452829 130 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 RNU7-113P-201ENST00000459273 62 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 RNU6-1258P-201ENST00000516911 111 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 IGLVI-20-201ENST00000519296 130 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 AC098479.1-201ENST00000609225 154 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 U7.6-201ENST00000610841 64 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 SNORA70.25-201ENST00000612741 95 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 MIR8062-201ENST00000621515 85 ntBASIC-0.17□□□□□ -2.44
RFX3P48380 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-0.17□□□□□ -2.44
RFX3P48380 Y_RNA.121-201ENST00000363309 113 ntBASIC-0.18□□□□□ -2.44
RFX3P48380 SNORA32.1-201ENST00000364514 115 ntBASIC-0.18□□□□□ -2.44
RFX3P48380 RNU6-867P-201ENST00000364956 107 ntBASIC-0.18□□□□□ -2.44
RFX3P48380 MIR501-201ENST00000390204 84 ntBASIC-0.18□□□□□ -2.44
RFX3P48380 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.18□□□□□ -2.44
RFX3P48380 RNU6-269P-201ENST00000391077 97 ntBASIC-0.18□□□□□ -2.44
RFX3P48380 MTCYBP6-201ENST00000441810 138 ntBASIC-0.18□□□□□ -2.44
RFX3P48380 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.18□□□□□ -2.44
RFX3P48380 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-0.18□□□□□ -2.44
RFX3P48380 SNORD115-24-201ENST00000363528 82 ntBASIC-0.19□□□□□ -2.44
RFX3P48380 Y_RNA.171-201ENST00000363760 102 ntBASIC-0.19□□□□□ -2.44
RFX3P48380 RNU6-726P-201ENST00000364680 107 ntBASIC-0.19□□□□□ -2.44
RFX3P48380 Y_RNA.292-201ENST00000364904 97 ntBASIC-0.19□□□□□ -2.44
RFX3P48380 Y_RNA.422-201ENST00000384054 114 ntBASIC-0.19□□□□□ -2.44
RFX3P48380 RNA5SP33-201ENST00000516687 98 ntBASIC-0.19□□□□□ -2.44
RFX3P48380 AC138869.1-201ENST00000568623 124 ntBASIC-0.19□□□□□ -2.44
RFX3P48380 AC044792.1-201ENST00000593294 196 ntBASIC-0.19□□□□□ -2.44
RFX3P48380 AC011921.3-201ENST00000605540 361 ntBASIC-0.19□□□□□ -2.44
RFX3P48380 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-0.19□□□□□ -2.44
RFX3P48380 Y_RNA.49-201ENST00000362714 112 ntBASIC-0.2□□□□□ -2.44
RFX3P48380 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.2□□□□□ -2.44
RFX3P48380 RNU6-643P-201ENST00000384018 107 ntBASIC-0.2□□□□□ -2.44
RFX3P48380 Y_RNA.461-201ENST00000384263 103 ntBASIC-0.2□□□□□ -2.44
RFX3P48380 MIR548L-201ENST00000408303 86 ntBASIC-0.2□□□□□ -2.44
RFX3P48380 Y_RNA.797-201ENST00000515977 94 ntBASIC-0.2□□□□□ -2.44
RFX3P48380 RNU6-635P-201ENST00000516651 102 ntBASIC-0.2□□□□□ -2.44
RFX3P48380 MIR548H5-201ENST00000580314 60 ntBASIC-0.2□□□□□ -2.44
RFX3P48380 RNU7-10P-201ENST00000607194 63 ntBASIC-0.2□□□□□ -2.44
RFX3P48380 AL162376.1-201ENST00000624117 175 ntBASIC-0.2□□□□□ -2.44
RFX3P48380 U6.109-201ENST00000636749 87 ntBASIC-0.2□□□□□ -2.44
RFX3P48380 SNORD114-10-201ENST00000363409 72 ntBASIC-0.21□□□□□ -2.44
RFX3P48380 RNU6-702P-201ENST00000364982 107 ntBASIC-0.21□□□□□ -2.44
RFX3P48380 Y_RNA.470-201ENST00000384307 117 ntBASIC-0.21□□□□□ -2.44
RFX3P48380 Y_RNA.483-201ENST00000384380 101 ntBASIC-0.21□□□□□ -2.44
RFX3P48380 MT-TW-201ENST00000387382 68 ntBASIC-0.21□□□□□ -2.44
RFX3P48380 RNU7-159P-201ENST00000459284 62 ntBASIC-0.21□□□□□ -2.44
RFX3P48380 AC138749.4-201ENST00000563970 127 ntBASIC-0.21□□□□□ -2.44
RFX3P48380 Y_RNA.170-201ENST00000363746 110 ntBASIC-0.22□□□□□ -2.44
RFX3P48380 RNU6-35P-201ENST00000384530 107 ntBASIC-0.22□□□□□ -2.44
RFX3P48380 MIR106A-201ENST00000384870 81 ntBASIC-0.22□□□□□ -2.44
RFX3P48380 MIR1912-201ENST00000410389 80 ntBASIC-0.22□□□□□ -2.44
RFX3P48380 MTND1P19-201ENST00000511780 315 ntBASIC-0.22□□□□□ -2.44
RFX3P48380 RNU7-137P-201ENST00000516788 62 ntBASIC-0.22□□□□□ -2.44
RFX3P48380 Y_RNA.701-201ENST00000516812 110 ntBASIC-0.22□□□□□ -2.44
RFX3P48380 MIR4643-201ENST00000577473 78 ntBASIC-0.22□□□□□ -2.44
RFX3P48380 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-0.22□□□□□ -2.44
RFX3P48380 AC073869.9-201ENST00000641610 120 ntBASIC-0.22□□□□□ -2.44
RFX3P48380 RNU6-161P-201ENST00000363051 106 ntBASIC-0.23□□□□□ -2.45
RFX3P48380 Y_RNA.119-201ENST00000363301 96 ntBASIC-0.23□□□□□ -2.45
RFX3P48380 Y_RNA.120-201ENST00000363304 110 ntBASIC-0.23□□□□□ -2.45
RFX3P48380 Y_RNA.512-201ENST00000384518 102 ntBASIC-0.23□□□□□ -2.45
RFX3P48380 RNU6-429P-201ENST00000384582 108 ntBASIC-0.23□□□□□ -2.45
RFX3P48380 RNA5SP163-201ENST00000410304 99 ntBASIC-0.23□□□□□ -2.45
RFX3P48380 MIR548AD-201ENST00000584780 82 ntBASIC-0.23□□□□□ -2.45
RFX3P48380 RNU2-4P-201ENST00000606190 192 ntBASIC-0.23□□□□□ -2.45
RFX3P48380 AC011603.4-201ENST00000611325 277 ntBASIC-0.23□□□□□ -2.45
RFX3P48380 Y_RNA.76-201ENST00000362931 109 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 RNU6-797P-201ENST00000363101 109 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 RNY1P2-201ENST00000364820 117 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 Y_RNA.308-201ENST00000365043 101 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 Y_RNA.366-201ENST00000365540 102 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 RNU6-1227P-201ENST00000383981 107 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 MIR548H3-201ENST00000408771 118 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 RNU7-165P-201ENST00000458864 60 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 RNU7-161P-201ENST00000517289 62 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 MRPS18CP4-201ENST00000535821 231 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 MIR3925-201ENST00000584674 77 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 AL670379.3-201ENST00000605040 251 ntBASIC-0.24□□□□□ -2.45
RFX3P48380 Y_RNA.54-201ENST00000362766 105 ntBASIC-0.25□□□□□ -2.45
RFX3P48380 RNU6-238P-201ENST00000363313 106 ntBASIC-0.25□□□□□ -2.45
RFX3P48380 Y_RNA.277-201ENST00000364754 102 ntBASIC-0.25□□□□□ -2.45
RFX3P48380 RNU6-472P-201ENST00000384299 107 ntBASIC-0.25□□□□□ -2.45
RFX3P48380 Y_RNA.531-201ENST00000384589 121 ntBASIC-0.25□□□□□ -2.45
RFX3P48380 Y_RNA.574-201ENST00000384766 95 ntBASIC-0.25□□□□□ -2.45
RFX3P48380 SNORD41.1-201ENST00000391000 69 ntBASIC-0.25□□□□□ -2.45
RFX3P48380 RNU7-104P-201ENST00000459398 79 ntBASIC-0.25□□□□□ -2.45
RFX3P48380 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.25□□□□□ -2.45
RFX3P48380 SNORD67.1-201ENST00000516618 108 ntBASIC-0.25□□□□□ -2.45
RFX3P48380 SNORD114-31-201ENST00000363219 75 ntBASIC-0.26□□□□□ -2.45
RFX3P48380 RNA5SP403-201ENST00000363598 108 ntBASIC-0.26□□□□□ -2.45
RFX3P48380 Y_RNA.274-201ENST00000364714 101 ntBASIC-0.26□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms