Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 Y_RNA.441-201ENST00000384123 112 ntBASIC0.51□□□□□ -2.33
TNFRSF4P43489 Y_RNA.690-201ENST00000516603 95 ntBASIC0.51□□□□□ -2.33
TNFRSF4P43489 RNU6-1258P-201ENST00000516911 111 ntBASIC0.51□□□□□ -2.33
TNFRSF4P43489 AC008608.1-201ENST00000603910 127 ntBASIC0.51□□□□□ -2.33
TNFRSF4P43489 AC011603.4-201ENST00000611325 277 ntBASIC0.51□□□□□ -2.33
TNFRSF4P43489 Y_RNA.8-201ENST00000362353 102 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 Y_RNA.150-201ENST00000363562 102 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 RNA5SP457-201ENST00000363657 124 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 RNY1P11-201ENST00000363759 113 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 RNU6-449P-201ENST00000383914 107 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 SNORA32-201ENST00000384072 121 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 Y_RNA.470-201ENST00000384307 117 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 AC114737.2-201ENST00000421583 173 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 RNA5SP33-201ENST00000516687 98 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 RNU2-60P-201ENST00000517290 128 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 AC133485.4-201ENST00000561835 220 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 AC138907.4-201ENST00000570107 226 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 MIR3612-201ENST00000579753 87 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 MIR4305-201ENST00000583252 102 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 AC021443.1-201ENST00000604478 211 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.5□□□□□ -2.33
TNFRSF4P43489 RNU6-1130P-201ENST00000365434 107 ntBASIC0.49□□□□□ -2.33
TNFRSF4P43489 SNORA72.6-201ENST00000384520 129 ntBASIC0.49□□□□□ -2.33
TNFRSF4P43489 U8.15-201ENST00000390947 134 ntBASIC0.49□□□□□ -2.33
TNFRSF4P43489 MIR513C-201ENST00000401352 84 ntBASIC0.49□□□□□ -2.33
TNFRSF4P43489 RNU6-1086P-201ENST00000410930 100 ntBASIC0.49□□□□□ -2.33
TNFRSF4P43489 Y_RNA.686-201ENST00000516548 134 ntBASIC0.49□□□□□ -2.33
TNFRSF4P43489 SNORD92-201ENST00000585078 85 ntBASIC0.49□□□□□ -2.33
TNFRSF4P43489 AC243829.6-201ENST00000612652 106 ntBASIC0.49□□□□□ -2.33
TNFRSF4P43489 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.49□□□□□ -2.33
TNFRSF4P43489 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
TNFRSF4P43489 RNU6-508P-201ENST00000363231 103 ntBASIC0.48□□□□□ -2.33
TNFRSF4P43489 RNU6-309P-201ENST00000364573 106 ntBASIC0.48□□□□□ -2.33
TNFRSF4P43489 RNY1P13-201ENST00000365030 105 ntBASIC0.48□□□□□ -2.33
TNFRSF4P43489 RNY1P8-201ENST00000383970 114 ntBASIC0.48□□□□□ -2.33
TNFRSF4P43489 RNU6-949P-201ENST00000384040 107 ntBASIC0.48□□□□□ -2.33
TNFRSF4P43489 MIR140-201ENST00000385282 100 ntBASIC0.48□□□□□ -2.33
TNFRSF4P43489 RNU7-164P-201ENST00000459221 62 ntBASIC0.48□□□□□ -2.33
TNFRSF4P43489 RNU7-79P-201ENST00000516082 62 ntBASIC0.48□□□□□ -2.33
TNFRSF4P43489 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.48□□□□□ -2.33
TNFRSF4P43489 AC090897.1-201ENST00000580909 226 ntBASIC0.48□□□□□ -2.33
TNFRSF4P43489 Y_RNA.778-201ENST00000620203 90 ntBASIC0.48□□□□□ -2.33
TNFRSF4P43489 MIR330-201ENST00000362196 94 ntBASIC0.47□□□□□ -2.33
TNFRSF4P43489 MIR18A-201ENST00000362310 71 ntBASIC0.47□□□□□ -2.33
TNFRSF4P43489 Y_RNA.120-201ENST00000363304 110 ntBASIC0.47□□□□□ -2.33
TNFRSF4P43489 RNU4-45P-201ENST00000365469 141 ntBASIC0.47□□□□□ -2.33
TNFRSF4P43489 RNU6-804P-201ENST00000384286 107 ntBASIC0.47□□□□□ -2.33
TNFRSF4P43489 AL512326.2-201ENST00000426359 151 ntBASIC0.47□□□□□ -2.33
TNFRSF4P43489 SNORA25.12-201ENST00000516202 82 ntBASIC0.47□□□□□ -2.33
TNFRSF4P43489 RNU2-35P-201ENST00000516446 142 ntBASIC0.47□□□□□ -2.33
TNFRSF4P43489 Y_RNA.13-201ENST00000362403 112 ntBASIC0.46□□□□□ -2.34
TNFRSF4P43489 Y_RNA.251-201ENST00000364551 99 ntBASIC0.46□□□□□ -2.34
TNFRSF4P43489 RNA5SP117-201ENST00000365294 118 ntBASIC0.46□□□□□ -2.34
TNFRSF4P43489 SNORA50A-201ENST00000384225 134 ntBASIC0.46□□□□□ -2.34
TNFRSF4P43489 Y_RNA.531-201ENST00000384589 121 ntBASIC0.46□□□□□ -2.34
TNFRSF4P43489 RNU6-460P-201ENST00000391158 108 ntBASIC0.46□□□□□ -2.34
TNFRSF4P43489 Y_RNA.651-201ENST00000459380 103 ntBASIC0.46□□□□□ -2.34
TNFRSF4P43489 RNU6-448P-201ENST00000517052 107 ntBASIC0.46□□□□□ -2.34
TNFRSF4P43489 MIR548AE2-201ENST00000583456 67 ntBASIC0.46□□□□□ -2.34
TNFRSF4P43489 MIR8087-201ENST00000612745 78 ntBASIC0.46□□□□□ -2.34
TNFRSF4P43489 FTX_2.1-201ENST00000618816 94 ntBASIC0.46□□□□□ -2.34
TNFRSF4P43489 uc_338.17-201ENST00000619633 179 ntBASIC0.46□□□□□ -2.34
TNFRSF4P43489 Y_RNA.42-201ENST00000362660 108 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 RNU6-915P-201ENST00000364943 103 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 Y_RNA.366-201ENST00000365540 102 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 VTRNA1-3-201ENST00000365645 89 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 Y_RNA.398-201ENST00000383952 99 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 AL603914.1-201ENST00000401964 204 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 SNORD100-201ENST00000408573 76 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 Y_RNA.617-201ENST00000410920 90 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 RNU7-123P-201ENST00000515911 60 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 RN7SKP12-201ENST00000516275 143 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 RNU7-35P-201ENST00000517174 62 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 DEFB131E-201ENST00000532329 154 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 MIR4491-201ENST00000581087 68 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 MIR8066-201ENST00000617280 78 ntBASIC0.45□□□□□ -2.34
TNFRSF4P43489 SNORD115-2-201ENST00000362842 82 ntBASIC0.44□□□□□ -2.34
TNFRSF4P43489 SNORD115-20-201ENST00000365099 82 ntBASIC0.44□□□□□ -2.34
TNFRSF4P43489 RNU6-886P-201ENST00000384319 105 ntBASIC0.44□□□□□ -2.34
TNFRSF4P43489 Y_RNA.588-201ENST00000391254 102 ntBASIC0.44□□□□□ -2.34
TNFRSF4P43489 RNU6-394P-201ENST00000410735 107 ntBASIC0.44□□□□□ -2.34
TNFRSF4P43489 AC002350.1-201ENST00000490759 375 ntBASIC0.44□□□□□ -2.34
TNFRSF4P43489 RNA5SP330-201ENST00000517096 96 ntBASIC0.44□□□□□ -2.34
TNFRSF4P43489 RNU6-794P-201ENST00000517261 64 ntBASIC0.44□□□□□ -2.34
TNFRSF4P43489 MIR3144-201ENST00000579460 79 ntBASIC0.44□□□□□ -2.34
TNFRSF4P43489 MIR6082-201ENST00000613604 109 ntBASIC0.44□□□□□ -2.34
TNFRSF4P43489 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.43□□□□□ -2.34
TNFRSF4P43489 Y_RNA.115-201ENST00000363272 98 ntBASIC0.43□□□□□ -2.34
TNFRSF4P43489 Y_RNA.298-201ENST00000364960 107 ntBASIC0.43□□□□□ -2.34
TNFRSF4P43489 RNU6-679P-201ENST00000391003 106 ntBASIC0.43□□□□□ -2.34
TNFRSF4P43489 Y_RNA.580-201ENST00000391004 95 ntBASIC0.43□□□□□ -2.34
TNFRSF4P43489 PCNPP3-201ENST00000393579 471 ntBASIC0.43□□□□□ -2.34
TNFRSF4P43489 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.43□□□□□ -2.34
TNFRSF4P43489 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.43□□□□□ -2.34
TNFRSF4P43489 AL157398.1-201ENST00000452981 186 ntBASIC0.43□□□□□ -2.34
TNFRSF4P43489 SNORD67.1-201ENST00000516618 108 ntBASIC0.43□□□□□ -2.34
TNFRSF4P43489 RNY4P20-201ENST00000516678 93 ntBASIC0.43□□□□□ -2.34
TNFRSF4P43489 SNORA25.16-201ENST00000516741 121 ntBASIC0.43□□□□□ -2.34
TNFRSF4P43489 AC098479.1-201ENST00000609225 154 ntBASIC0.43□□□□□ -2.34
TNFRSF4P43489 AL137067.1-201ENST00000615933 120 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 166.3 ms