Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC023827.1-201ENST00000569247 97 ntBASIC1.14□□□□□ -2.23
CIITAP33076 MIR151B-201ENST00000584249 96 ntBASIC1.14□□□□□ -2.23
CIITAP33076 AC106800.4-201ENST00000614905 153 ntBASIC1.14□□□□□ -2.23
CIITAP33076 MIR6779-201ENST00000617283 64 ntBASIC1.14□□□□□ -2.23
CIITAP33076 AL662814.1-201ENST00000617364 121 ntBASIC1.14□□□□□ -2.23
CIITAP33076 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.14□□□□□ -2.23
CIITAP33076 MIR6767-201ENST00000637302 66 ntBASIC1.14□□□□□ -2.23
CIITAP33076 RNY1P13-201ENST00000365030 105 ntBASIC1.13□□□□□ -2.23
CIITAP33076 SNORA32-201ENST00000384072 121 ntBASIC1.13□□□□□ -2.23
CIITAP33076 AC096949.1-201ENST00000412047 152 ntBASIC1.13□□□□□ -2.23
CIITAP33076 RNU7-90P-201ENST00000459216 62 ntBASIC1.13□□□□□ -2.23
CIITAP33076 AC141846.1-201ENST00000568348 142 ntBASIC1.13□□□□□ -2.23
CIITAP33076 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.13□□□□□ -2.23
CIITAP33076 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
CIITAP33076 SNORD114-27-201ENST00000363766 70 ntBASIC1.12□□□□□ -2.23
CIITAP33076 RNU1-93P-201ENST00000364704 169 ntBASIC1.12□□□□□ -2.23
CIITAP33076 Y_RNA.291-201ENST00000364886 113 ntBASIC1.12□□□□□ -2.23
CIITAP33076 SNORA2B-201ENST00000384583 137 ntBASIC1.12□□□□□ -2.23
CIITAP33076 RNU6-1165P-201ENST00000410119 107 ntBASIC1.12□□□□□ -2.23
CIITAP33076 RNU6-1086P-201ENST00000410930 100 ntBASIC1.12□□□□□ -2.23
CIITAP33076 AC063976.4-201ENST00000421971 163 ntBASIC1.12□□□□□ -2.23
CIITAP33076 RNU7-79P-201ENST00000516082 62 ntBASIC1.12□□□□□ -2.23
CIITAP33076 AL359881.1-201ENST00000602916 267 ntBASIC1.12□□□□□ -2.23
CIITAP33076 Y_RNA.773-201ENST00000607168 90 ntBASIC1.12□□□□□ -2.23
CIITAP33076 U6.95-201ENST00000636931 70 ntBASIC1.12□□□□□ -2.23
CIITAP33076 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
CIITAP33076 RNU6-369P-201ENST00000362515 102 ntBASIC1.11□□□□□ -2.23
CIITAP33076 Y_RNA.299-201ENST00000364973 94 ntBASIC1.11□□□□□ -2.23
CIITAP33076 MIR200A-201ENST00000384875 90 ntBASIC1.11□□□□□ -2.23
CIITAP33076 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.11□□□□□ -2.23
CIITAP33076 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.11□□□□□ -2.23
CIITAP33076 Y_RNA.213-201ENST00000364178 111 ntBASIC1.1□□□□□ -2.23
CIITAP33076 Y_RNA.344-201ENST00000365381 112 ntBASIC1.1□□□□□ -2.23
CIITAP33076 SNORD111-201ENST00000408139 94 ntBASIC1.1□□□□□ -2.23
CIITAP33076 Y_RNA.649-201ENST00000459077 103 ntBASIC1.1□□□□□ -2.23
CIITAP33076 UBL5P1-201ENST00000507979 193 ntBASIC1.1□□□□□ -2.23
CIITAP33076 RNU7-6P-201ENST00000516845 62 ntBASIC1.1□□□□□ -2.23
CIITAP33076 MIR4661-201ENST00000582720 75 ntBASIC1.1□□□□□ -2.23
CIITAP33076 RNU6-94P-201ENST00000607728 107 ntBASIC1.1□□□□□ -2.23
CIITAP33076 MIR6788-201ENST00000618842 66 ntBASIC1.1□□□□□ -2.23
CIITAP33076 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.1□□□□□ -2.23
CIITAP33076 RNU6-1290P-201ENST00000362957 109 ntBASIC1.09□□□□□ -2.23
CIITAP33076 SNORD115-19-201ENST00000363098 82 ntBASIC1.09□□□□□ -2.23
CIITAP33076 SNORD115-18-201ENST00000363293 82 ntBASIC1.09□□□□□ -2.23
CIITAP33076 RNA5SP325-201ENST00000363756 130 ntBASIC1.09□□□□□ -2.23
CIITAP33076 SNORD115-17-201ENST00000364612 82 ntBASIC1.09□□□□□ -2.23
CIITAP33076 RNU6-949P-201ENST00000384040 107 ntBASIC1.09□□□□□ -2.23
CIITAP33076 RNU6-1081P-201ENST00000384537 107 ntBASIC1.09□□□□□ -2.23
CIITAP33076 RNU6-429P-201ENST00000384582 108 ntBASIC1.09□□□□□ -2.23
CIITAP33076 Y_RNA.549-201ENST00000384657 102 ntBASIC1.09□□□□□ -2.23
CIITAP33076 MIR548D2-201ENST00000384955 97 ntBASIC1.09□□□□□ -2.23
CIITAP33076 MIR532-201ENST00000385025 91 ntBASIC1.09□□□□□ -2.23
CIITAP33076 MIR548A1-201ENST00000385041 97 ntBASIC1.09□□□□□ -2.23
CIITAP33076 SNORD83.1-201ENST00000411362 77 ntBASIC1.09□□□□□ -2.23
CIITAP33076 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.09□□□□□ -2.23
CIITAP33076 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.09□□□□□ -2.23
CIITAP33076 MIR3163-201ENST00000581592 73 ntBASIC1.09□□□□□ -2.23
CIITAP33076 AL670379.3-201ENST00000605040 251 ntBASIC1.09□□□□□ -2.23
CIITAP33076 AL035470.1-201ENST00000622571 220 ntBASIC1.09□□□□□ -2.23
CIITAP33076 SNORD114-24-201ENST00000365029 72 ntBASIC1.08□□□□□ -2.24
CIITAP33076 RNU6-1144P-201ENST00000384247 104 ntBASIC1.08□□□□□ -2.24
CIITAP33076 RNU6-616P-201ENST00000384353 107 ntBASIC1.08□□□□□ -2.24
CIITAP33076 U8.15-201ENST00000390947 134 ntBASIC1.08□□□□□ -2.24
CIITAP33076 AC015818.7-201ENST00000428754 109 ntBASIC1.08□□□□□ -2.24
CIITAP33076 AC087499.7-201ENST00000441958 109 ntBASIC1.08□□□□□ -2.24
CIITAP33076 SNORD67.1-201ENST00000516618 108 ntBASIC1.08□□□□□ -2.24
CIITAP33076 MIR1255B1-201ENST00000636325 63 ntBASIC1.08□□□□□ -2.24
CIITAP33076 AL589743.1-201ENST00000551932 2712 ntBASIC1.07□□□□□ -2.24
CIITAP33076 MIR373-201ENST00000362273 69 ntBASIC1.07□□□□□ -2.24
CIITAP33076 RNY4P6-201ENST00000363667 96 ntBASIC1.07□□□□□ -2.24
CIITAP33076 Y_RNA.362-201ENST00000365518 110 ntBASIC1.07□□□□□ -2.24
CIITAP33076 SNORA22-201ENST00000383907 134 ntBASIC1.07□□□□□ -2.24
CIITAP33076 MIR548A3-201ENST00000385297 97 ntBASIC1.07□□□□□ -2.24
CIITAP33076 RNU6-1307P-201ENST00000391012 103 ntBASIC1.07□□□□□ -2.24
CIITAP33076 RNA5SP237-201ENST00000410414 113 ntBASIC1.07□□□□□ -2.24
CIITAP33076 MIR18B-201ENST00000454574 71 ntBASIC1.07□□□□□ -2.24
CIITAP33076 RNU7-137P-201ENST00000516788 62 ntBASIC1.07□□□□□ -2.24
CIITAP33076 AC007012.1-201ENST00000567192 175 ntBASIC1.07□□□□□ -2.24
CIITAP33076 MIR4679-2-201ENST00000578358 77 ntBASIC1.07□□□□□ -2.24
CIITAP33076 AC020891.4-201ENST00000605745 93 ntBASIC1.07□□□□□ -2.24
CIITAP33076 AC103810.9-201ENST00000606688 112 ntBASIC1.07□□□□□ -2.24
CIITAP33076 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.07□□□□□ -2.24
CIITAP33076 PVT1_3.1-201ENST00000620853 95 ntBASIC1.07□□□□□ -2.24
CIITAP33076 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.07□□□□□ -2.24
CIITAP33076 RNU6-834P-201ENST00000362367 110 ntBASIC1.06□□□□□ -2.24
CIITAP33076 RNU6-934P-201ENST00000365154 107 ntBASIC1.06□□□□□ -2.24
CIITAP33076 RNU6-476P-201ENST00000384726 107 ntBASIC1.06□□□□□ -2.24
CIITAP33076 MT-TF-201ENST00000387314 71 ntBASIC1.06□□□□□ -2.24
CIITAP33076 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.06□□□□□ -2.24
CIITAP33076 RNU6-1064P-201ENST00000410626 104 ntBASIC1.06□□□□□ -2.24
CIITAP33076 SNORD124-201ENST00000459577 104 ntBASIC1.06□□□□□ -2.24
CIITAP33076 RPS29P1-201ENST00000465274 159 ntBASIC1.06□□□□□ -2.24
CIITAP33076 MTND5P34-201ENST00000568888 325 ntBASIC1.06□□□□□ -2.24
CIITAP33076 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.06□□□□□ -2.24
CIITAP33076 MIR6857-201ENST00000613267 93 ntBASIC1.06□□□□□ -2.24
CIITAP33076 MIR6129-201ENST00000616087 109 ntBASIC1.06□□□□□ -2.24
CIITAP33076 Y_RNA.35-201ENST00000362601 101 ntBASIC1.05□□□□□ -2.24
CIITAP33076 Y_RNA.273-201ENST00000364703 102 ntBASIC1.05□□□□□ -2.24
CIITAP33076 MIR520E-201ENST00000384867 87 ntBASIC1.05□□□□□ -2.24
CIITAP33076 MIR206-201ENST00000384872 86 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 290.8 ms