Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.94□□□□□ -1.94
COL9A1P20849 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.93□□□□□ -1.94
COL9A1P20849 Y_RNA.371-201ENST00000365591 113 ntBASIC2.93□□□□□ -1.94
COL9A1P20849 RNU6-203P-201ENST00000384038 104 ntBASIC2.93□□□□□ -1.94
COL9A1P20849 MIR1302-7-201ENST00000408841 72 ntBASIC2.93□□□□□ -1.94
COL9A1P20849 Y_RNA.606-201ENST00000410579 103 ntBASIC2.93□□□□□ -1.94
COL9A1P20849 SNORA31.17-201ENST00000516953 127 ntBASIC2.93□□□□□ -1.94
COL9A1P20849 MIR8053-201ENST00000613344 75 ntBASIC2.93□□□□□ -1.94
COL9A1P20849 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL9A1P20849 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL9A1P20849 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
COL9A1P20849 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.92□□□□□ -1.94
COL9A1P20849 Y_RNA.178-201ENST00000363832 102 ntBASIC2.92□□□□□ -1.94
COL9A1P20849 MIR9-1-201ENST00000385198 89 ntBASIC2.92□□□□□ -1.94
COL9A1P20849 RPL30P7-201ENST00000479312 323 ntBASIC2.92□□□□□ -1.94
COL9A1P20849 SNORA9.3-201ENST00000516383 129 ntBASIC2.92□□□□□ -1.94
COL9A1P20849 MIR4491-201ENST00000581087 68 ntBASIC2.92□□□□□ -1.94
COL9A1P20849 U4.3-201ENST00000621047 82 ntBASIC2.92□□□□□ -1.94
COL9A1P20849 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.92□□□□□ -1.94
COL9A1P20849 UBBP3-201ENST00000445497 241 ntBASIC2.91□□□□□ -1.94
COL9A1P20849 AP004217.1-201ENST00000480579 346 ntBASIC2.91□□□□□ -1.94
COL9A1P20849 MIR548H5-201ENST00000580314 60 ntBASIC2.91□□□□□ -1.94
COL9A1P20849 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.94
COL9A1P20849 SNORD56.5-201ENST00000364281 72 ntBASIC2.9□□□□□ -1.95
COL9A1P20849 Y_RNA.443-201ENST00000384135 111 ntBASIC2.9□□□□□ -1.95
COL9A1P20849 RNU6-614P-201ENST00000384369 107 ntBASIC2.9□□□□□ -1.95
COL9A1P20849 MIR3192-201ENST00000584920 77 ntBASIC2.9□□□□□ -1.95
COL9A1P20849 U6.59-201ENST00000615686 107 ntBASIC2.9□□□□□ -1.95
COL9A1P20849 MIR6779-201ENST00000617283 64 ntBASIC2.9□□□□□ -1.95
COL9A1P20849 MIR7153-201ENST00000637758 57 ntBASIC2.9□□□□□ -1.95
COL9A1P20849 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
COL9A1P20849 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
COL9A1P20849 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
COL9A1P20849 MIR377-201ENST00000362145 69 ntBASIC2.89□□□□□ -1.95
COL9A1P20849 SNORD56.3-201ENST00000363507 71 ntBASIC2.89□□□□□ -1.95
COL9A1P20849 Y_RNA.224-201ENST00000364308 111 ntBASIC2.89□□□□□ -1.95
COL9A1P20849 MIR9-2-201ENST00000384838 87 ntBASIC2.89□□□□□ -1.95
COL9A1P20849 SNORA64.4-201ENST00000516632 81 ntBASIC2.89□□□□□ -1.95
COL9A1P20849 SNORA25.16-201ENST00000516741 121 ntBASIC2.89□□□□□ -1.95
COL9A1P20849 RNU11-2P-201ENST00000516898 142 ntBASIC2.89□□□□□ -1.95
COL9A1P20849 snoU13.31-201ENST00000607291 104 ntBASIC2.89□□□□□ -1.95
COL9A1P20849 MIR101-2-201ENST00000362195 79 ntBASIC2.88□□□□□ -1.95
COL9A1P20849 Y_RNA.536-201ENST00000384621 113 ntBASIC2.88□□□□□ -1.95
COL9A1P20849 SNORD41-201ENST00000386967 70 ntBASIC2.88□□□□□ -1.95
COL9A1P20849 SNORD100-201ENST00000408573 76 ntBASIC2.88□□□□□ -1.95
COL9A1P20849 RNU6-321P-201ENST00000410912 106 ntBASIC2.88□□□□□ -1.95
COL9A1P20849 RN7SL274P-201ENST00000492268 272 ntBASIC2.88□□□□□ -1.95
COL9A1P20849 TRDV1-202ENST00000621643 102 ntBASIC2.88□□□□□ -1.95
COL9A1P20849 AC103706.3-201ENST00000636297 85 ntBASIC2.88□□□□□ -1.95
COL9A1P20849 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
COL9A1P20849 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
COL9A1P20849 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
COL9A1P20849 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL9A1P20849 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
COL9A1P20849 RNU6-664P-201ENST00000362381 107 ntBASIC2.87□□□□□ -1.95
COL9A1P20849 RNU6-1260P-201ENST00000362944 107 ntBASIC2.87□□□□□ -1.95
COL9A1P20849 RNU1-112P-201ENST00000364401 164 ntBASIC2.87□□□□□ -1.95
COL9A1P20849 RNA5SP259-201ENST00000365541 109 ntBASIC2.87□□□□□ -1.95
COL9A1P20849 Y_RNA.588-201ENST00000391254 102 ntBASIC2.87□□□□□ -1.95
COL9A1P20849 SNORD93-201ENST00000408813 74 ntBASIC2.87□□□□□ -1.95
COL9A1P20849 RNA5SP274-201ENST00000410484 108 ntBASIC2.87□□□□□ -1.95
COL9A1P20849 RNA5SP492-201ENST00000411330 114 ntBASIC2.87□□□□□ -1.95
COL9A1P20849 RNA5SP270-201ENST00000411361 118 ntBASIC2.87□□□□□ -1.95
COL9A1P20849 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.87□□□□□ -1.95
COL9A1P20849 AL356320.1-201ENST00000429616 163 ntBASIC2.87□□□□□ -1.95
COL9A1P20849 AC097510.1-201ENST00000510945 133 ntBASIC2.87□□□□□ -1.95
COL9A1P20849 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL9A1P20849 SNORD101-201ENST00000384027 73 ntBASIC2.86□□□□□ -1.95
COL9A1P20849 MIR513A1-201ENST00000385138 129 ntBASIC2.86□□□□□ -1.95
COL9A1P20849 MIR18B-201ENST00000454574 71 ntBASIC2.86□□□□□ -1.95
COL9A1P20849 RNU7-195P-201ENST00000458793 62 ntBASIC2.86□□□□□ -1.95
COL9A1P20849 TRAJ51-201ENST00000504127 63 ntBASIC2.86□□□□□ -1.95
COL9A1P20849 Y_RNA.809-201ENST00000516058 95 ntBASIC2.86□□□□□ -1.95
COL9A1P20849 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
COL9A1P20849 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
COL9A1P20849 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL9A1P20849 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL9A1P20849 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL9A1P20849 SNORA64-201ENST00000384674 134 ntBASIC2.85□□□□□ -1.95
COL9A1P20849 AL138827.1-201ENST00000402666 306 ntBASIC2.85□□□□□ -1.95
COL9A1P20849 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.85□□□□□ -1.95
COL9A1P20849 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
COL9A1P20849 RN7SL442P-201ENST00000473804 320 ntBASIC2.85□□□□□ -1.95
COL9A1P20849 RN7SL633P-201ENST00000488974 297 ntBASIC2.85□□□□□ -1.95
COL9A1P20849 RNU6-881P-201ENST00000516813 102 ntBASIC2.85□□□□□ -1.95
COL9A1P20849 MIR4511-201ENST00000582784 87 ntBASIC2.85□□□□□ -1.95
COL9A1P20849 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
COL9A1P20849 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
COL9A1P20849 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL9A1P20849 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
COL9A1P20849 AL161935.2-201ENST00000414627 60 ntBASIC2.84□□□□□ -1.95
COL9A1P20849 RNU2-19P-201ENST00000517288 84 ntBASIC2.84□□□□□ -1.95
COL9A1P20849 MIR4696-201ENST00000581431 70 ntBASIC2.84□□□□□ -1.95
COL9A1P20849 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.84□□□□□ -1.95
COL9A1P20849 DLEU2_3.1-201ENST00000620005 73 ntBASIC2.84□□□□□ -1.95
COL9A1P20849 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL9A1P20849 Y_RNA.56-201ENST00000362798 112 ntBASIC2.83□□□□□ -1.96
COL9A1P20849 SNORA25.3-201ENST00000363205 127 ntBASIC2.83□□□□□ -1.96
COL9A1P20849 RNU1-36P-201ENST00000365130 165 ntBASIC2.83□□□□□ -1.96
COL9A1P20849 SNORD45A-201ENST00000384512 84 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 171.5 ms