Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNU6-571P-201ENST00000384128 107 ntBASIC2.4□□□□□ -2.03
USP3Q9Y6I4 RNU6-519P-201ENST00000410590 108 ntBASIC2.4□□□□□ -2.03
USP3Q9Y6I4 AC244023.1-201ENST00000426884 112 ntBASIC2.4□□□□□ -2.03
USP3Q9Y6I4 MIR2115-201ENST00000516657 100 ntBASIC2.4□□□□□ -2.03
USP3Q9Y6I4 SNORA4-201ENST00000584302 138 ntBASIC2.4□□□□□ -2.03
USP3Q9Y6I4 AC242498.1-201ENST00000604134 111 ntBASIC2.4□□□□□ -2.03
USP3Q9Y6I4 MIR6766-201ENST00000622641 72 ntBASIC2.4□□□□□ -2.03
USP3Q9Y6I4 AC131280.1-202ENST00000624067 4211 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 ZNF658B-202ENST00000615961 3375 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 MIR588-201ENST00000384900 83 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 SNORD23.1-201ENST00000408212 104 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 Z98742.3-201ENST00000418637 326 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 AL356320.1-201ENST00000429616 163 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 SNRPGP12-201ENST00000449481 213 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 RN7SL429P-201ENST00000479090 223 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 RN7SL489P-201ENST00000486185 223 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 RN7SL327P-201ENST00000488659 223 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 RNU11-2P-201ENST00000516898 142 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 PRELID3BP2-201ENST00000605362 201 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 AL512598.1-201ENST00000610158 273 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 RN7SL853P-201ENST00000617250 223 ntBASIC2.39□□□□□ -2.03
USP3Q9Y6I4 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
USP3Q9Y6I4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
USP3Q9Y6I4 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.38□□□□□ -2.03
USP3Q9Y6I4 MT-TF-201ENST00000387314 71 ntBASIC2.38□□□□□ -2.03
USP3Q9Y6I4 RNU1-41P-201ENST00000516161 162 ntBASIC2.38□□□□□ -2.03
USP3Q9Y6I4 RNU1-48P-201ENST00000516400 162 ntBASIC2.38□□□□□ -2.03
USP3Q9Y6I4 RNA5SP402-201ENST00000517148 110 ntBASIC2.38□□□□□ -2.03
USP3Q9Y6I4 MIR3945-201ENST00000581853 98 ntBASIC2.38□□□□□ -2.03
USP3Q9Y6I4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.38□□□□□ -2.03
USP3Q9Y6I4 AC008163.1-202ENST00000636004 2889 ntBASIC2.37□□□□□ -2.03
USP3Q9Y6I4 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC2.37□□□□□ -2.03
USP3Q9Y6I4 RNU6-922P-201ENST00000516753 99 ntBASIC2.37□□□□□ -2.03
USP3Q9Y6I4 AC015688.6-201ENST00000577737 104 ntBASIC2.37□□□□□ -2.03
USP3Q9Y6I4 MIR221-201ENST00000385135 110 ntBASIC2.36□□□□□ -2.03
USP3Q9Y6I4 MIR1236-201ENST00000408340 102 ntBASIC2.36□□□□□ -2.03
USP3Q9Y6I4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.36□□□□□ -2.03
USP3Q9Y6I4 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.36□□□□□ -2.03
USP3Q9Y6I4 RPS27P21-201ENST00000486977 252 ntBASIC2.36□□□□□ -2.03
USP3Q9Y6I4 AC121758.2-201ENST00000553271 193 ntBASIC2.36□□□□□ -2.03
USP3Q9Y6I4 AC138749.4-201ENST00000563970 127 ntBASIC2.36□□□□□ -2.03
USP3Q9Y6I4 AC090897.1-201ENST00000580909 226 ntBASIC2.36□□□□□ -2.03
USP3Q9Y6I4 MIR4298-201ENST00000584380 73 ntBASIC2.36□□□□□ -2.03
USP3Q9Y6I4 AP000942.3-201ENST00000603702 160 ntBASIC2.36□□□□□ -2.03
USP3Q9Y6I4 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC2.36□□□□□ -2.03
USP3Q9Y6I4 AL096861.1-201ENST00000610899 123 ntBASIC2.36□□□□□ -2.03
USP3Q9Y6I4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.35□□□□□ -2.03
USP3Q9Y6I4 MIR377-201ENST00000362145 69 ntBASIC2.35□□□□□ -2.03
USP3Q9Y6I4 Y_RNA.57-201ENST00000362806 113 ntBASIC2.35□□□□□ -2.03
USP3Q9Y6I4 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
USP3Q9Y6I4 RNA5SP425-201ENST00000410336 112 ntBASIC2.35□□□□□ -2.03
USP3Q9Y6I4 RN7SKP223-201ENST00000410582 62 ntBASIC2.35□□□□□ -2.03
USP3Q9Y6I4 MIR1273D-201ENST00000577266 86 ntBASIC2.35□□□□□ -2.03
USP3Q9Y6I4 MIR3192-201ENST00000584920 77 ntBASIC2.35□□□□□ -2.03
USP3Q9Y6I4 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.35□□□□□ -2.03
USP3Q9Y6I4 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.35□□□□□ -2.03
USP3Q9Y6I4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
USP3Q9Y6I4 SNORD115-27-201ENST00000364430 82 ntBASIC2.34□□□□□ -2.03
USP3Q9Y6I4 SNORA67.1-201ENST00000364749 141 ntBASIC2.34□□□□□ -2.03
USP3Q9Y6I4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
USP3Q9Y6I4 AC244636.1-201ENST00000421152 228 ntBASIC2.34□□□□□ -2.03
USP3Q9Y6I4 RN7SL274P-201ENST00000492268 272 ntBASIC2.34□□□□□ -2.03
USP3Q9Y6I4 MIR4713-201ENST00000582691 75 ntBASIC2.34□□□□□ -2.03
USP3Q9Y6I4 AL773524.1-201ENST00000614065 229 ntBASIC2.34□□□□□ -2.03
USP3Q9Y6I4 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP3Q9Y6I4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP3Q9Y6I4 RNU6-524P-201ENST00000384270 107 ntBASIC2.33□□□□□ -2.04
USP3Q9Y6I4 MIR1302-7-201ENST00000408841 72 ntBASIC2.33□□□□□ -2.04
USP3Q9Y6I4 RNU6-1165P-201ENST00000410119 107 ntBASIC2.33□□□□□ -2.04
USP3Q9Y6I4 RNA5SP445-201ENST00000515889 115 ntBASIC2.33□□□□□ -2.04
USP3Q9Y6I4 RNA5SP200-201ENST00000516360 103 ntBASIC2.33□□□□□ -2.04
USP3Q9Y6I4 AC140658.3-201ENST00000567603 271 ntBASIC2.33□□□□□ -2.04
USP3Q9Y6I4 MIR4500-201ENST00000579472 76 ntBASIC2.33□□□□□ -2.04
USP3Q9Y6I4 MIR8074-201ENST00000615081 81 ntBASIC2.33□□□□□ -2.04
USP3Q9Y6I4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP3Q9Y6I4 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
USP3Q9Y6I4 AL359851.1-201ENST00000569460 4997 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.32□□□□□ -2.04
USP3Q9Y6I4 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
USP3Q9Y6I4 MIR30D-201ENST00000362283 70 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 RNU6-776P-201ENST00000364403 104 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 RNU6-1022P-201ENST00000365049 104 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 SNORA70B-201ENST00000384210 135 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
USP3Q9Y6I4 AC087499.7-201ENST00000441958 109 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 RNU7-62P-201ENST00000458856 62 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 Y_RNA.648-201ENST00000459455 110 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 RPL30P7-201ENST00000479312 323 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 AL133373.1-201ENST00000497098 94 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 RNU6-850P-201ENST00000516934 103 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 MIR4712-201ENST00000583750 82 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 AC020891.4-201ENST00000605745 93 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 MIR6740-201ENST00000618268 113 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.32□□□□□ -2.04
USP3Q9Y6I4 U6.109-201ENST00000636749 87 ntBASIC2.32□□□□□ -2.04
USP3Q9Y6I4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
USP3Q9Y6I4 RNU6-315P-201ENST00000362666 107 ntBASIC2.31□□□□□ -2.04
USP3Q9Y6I4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
USP3Q9Y6I4 SNORA48.3-201ENST00000391081 134 ntBASIC2.31□□□□□ -2.04
USP3Q9Y6I4 RNA5SP82-201ENST00000516707 92 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 126.7 ms