Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 Y_RNA.198-201ENST00000364013 98 ntBASIC1.28□□□□□ -2.2
PCDHA1Q9Y5I3 RNU6-1117P-201ENST00000384525 104 ntBASIC1.28□□□□□ -2.2
PCDHA1Q9Y5I3 SNORA2B-201ENST00000384583 137 ntBASIC1.28□□□□□ -2.2
PCDHA1Q9Y5I3 MIR1263-201ENST00000408324 86 ntBASIC1.28□□□□□ -2.2
PCDHA1Q9Y5I3 AC008267.6-201ENST00000441664 139 ntBASIC1.28□□□□□ -2.2
PCDHA1Q9Y5I3 RNU7-107P-201ENST00000459121 61 ntBASIC1.28□□□□□ -2.2
PCDHA1Q9Y5I3 AC087343.1-201ENST00000477341 475 ntBASIC1.28□□□□□ -2.2
PCDHA1Q9Y5I3 RNU6-1061P-201ENST00000516530 99 ntBASIC1.28□□□□□ -2.2
PCDHA1Q9Y5I3 RNA5SP33-201ENST00000516687 98 ntBASIC1.28□□□□□ -2.2
PCDHA1Q9Y5I3 AC012676.2-201ENST00000619258 186 ntBASIC1.28□□□□□ -2.2
PCDHA1Q9Y5I3 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
PCDHA1Q9Y5I3 RNU1-124P-201ENST00000363861 145 ntBASIC1.27□□□□□ -2.21
PCDHA1Q9Y5I3 Y_RNA.191-201ENST00000363972 113 ntBASIC1.27□□□□□ -2.21
PCDHA1Q9Y5I3 RNU6-1104P-201ENST00000384723 104 ntBASIC1.27□□□□□ -2.21
PCDHA1Q9Y5I3 RNU6-1086P-201ENST00000410930 100 ntBASIC1.27□□□□□ -2.21
PCDHA1Q9Y5I3 RPS23P4-201ENST00000487908 423 ntBASIC1.27□□□□□ -2.21
PCDHA1Q9Y5I3 AC025166.1-201ENST00000612411 163 ntBASIC1.27□□□□□ -2.21
PCDHA1Q9Y5I3 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 MIR96-201ENST00000362288 78 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 SNORA25.8-201ENST00000364831 128 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 Y_RNA.346-201ENST00000365385 112 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 SNORA18-201ENST00000384416 132 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 Y_RNA.528-201ENST00000384575 108 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 MIR618-201ENST00000385287 98 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 RNU6-1165P-201ENST00000410119 107 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 RNU4-69P-201ENST00000410677 143 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 MIR18B-201ENST00000454574 71 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 RNA5SP404-201ENST00000517118 132 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 RNU7-35P-201ENST00000517174 62 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 AC023827.1-201ENST00000569247 97 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 MIR4452-201ENST00000583004 71 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 AL662814.1-201ENST00000617364 121 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 MIR3914-2-201ENST00000637339 95 ntBASIC1.26□□□□□ -2.21
PCDHA1Q9Y5I3 AL157777.2-201ENST00000258070 137 ntBASIC1.25□□□□□ -2.21
PCDHA1Q9Y5I3 MIR30D-201ENST00000362283 70 ntBASIC1.25□□□□□ -2.21
PCDHA1Q9Y5I3 SNORD114-27-201ENST00000363766 70 ntBASIC1.25□□□□□ -2.21
PCDHA1Q9Y5I3 Y_RNA.224-201ENST00000364308 111 ntBASIC1.25□□□□□ -2.21
PCDHA1Q9Y5I3 SNORD114-22-201ENST00000365423 72 ntBASIC1.25□□□□□ -2.21
PCDHA1Q9Y5I3 RNU6-22P-201ENST00000384355 107 ntBASIC1.25□□□□□ -2.21
PCDHA1Q9Y5I3 RNU6-342P-201ENST00000384521 104 ntBASIC1.25□□□□□ -2.21
PCDHA1Q9Y5I3 Y_RNA.563-201ENST00000384707 108 ntBASIC1.25□□□□□ -2.21
PCDHA1Q9Y5I3 RNU6-62P-201ENST00000516526 102 ntBASIC1.25□□□□□ -2.21
PCDHA1Q9Y5I3 MIR548AE2-201ENST00000583456 67 ntBASIC1.25□□□□□ -2.21
PCDHA1Q9Y5I3 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
PCDHA1Q9Y5I3 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.24□□□□□ -2.21
PCDHA1Q9Y5I3 Y_RNA.213-201ENST00000364178 111 ntBASIC1.24□□□□□ -2.21
PCDHA1Q9Y5I3 RNU6-939P-201ENST00000384634 107 ntBASIC1.24□□□□□ -2.21
PCDHA1Q9Y5I3 MT-TF-201ENST00000387314 71 ntBASIC1.24□□□□□ -2.21
PCDHA1Q9Y5I3 MIR759-201ENST00000390224 91 ntBASIC1.24□□□□□ -2.21
PCDHA1Q9Y5I3 RNA5SP237-201ENST00000410414 113 ntBASIC1.24□□□□□ -2.21
PCDHA1Q9Y5I3 Y_RNA.630-201ENST00000411370 108 ntBASIC1.24□□□□□ -2.21
PCDHA1Q9Y5I3 RNU6-1333P-201ENST00000516162 93 ntBASIC1.24□□□□□ -2.21
PCDHA1Q9Y5I3 AC022523.2-201ENST00000561045 150 ntBASIC1.24□□□□□ -2.21
PCDHA1Q9Y5I3 MTND5P18-201ENST00000445624 1801 ntBASIC1.24□□□□□ -2.21
PCDHA1Q9Y5I3 RNU6-1237P-201ENST00000384777 107 ntBASIC1.23□□□□□ -2.21
PCDHA1Q9Y5I3 RNU7-79P-201ENST00000516082 62 ntBASIC1.23□□□□□ -2.21
PCDHA1Q9Y5I3 RNU6-479P-201ENST00000516348 105 ntBASIC1.23□□□□□ -2.21
PCDHA1Q9Y5I3 AC141846.1-201ENST00000568348 142 ntBASIC1.23□□□□□ -2.21
PCDHA1Q9Y5I3 uc_338.6-201ENST00000613544 171 ntBASIC1.23□□□□□ -2.21
PCDHA1Q9Y5I3 Y_RNA.525-201ENST00000384570 113 ntBASIC1.22□□□□□ -2.21
PCDHA1Q9Y5I3 MIR200A-201ENST00000384875 90 ntBASIC1.22□□□□□ -2.21
PCDHA1Q9Y5I3 MT-TI-201ENST00000387365 69 ntBASIC1.22□□□□□ -2.21
PCDHA1Q9Y5I3 RNU6-1168P-201ENST00000390831 104 ntBASIC1.22□□□□□ -2.21
PCDHA1Q9Y5I3 AL606753.1-201ENST00000427435 87 ntBASIC1.22□□□□□ -2.21
PCDHA1Q9Y5I3 MIR3163-201ENST00000581592 73 ntBASIC1.22□□□□□ -2.21
PCDHA1Q9Y5I3 SNORD114-21-201ENST00000606412 72 ntBASIC1.22□□□□□ -2.21
PCDHA1Q9Y5I3 AL365222.1-201ENST00000614661 98 ntBASIC1.22□□□□□ -2.21
PCDHA1Q9Y5I3 U6.95-201ENST00000636931 70 ntBASIC1.22□□□□□ -2.21
PCDHA1Q9Y5I3 Y_RNA.116-201ENST00000363292 103 ntBASIC1.21□□□□□ -2.22
PCDHA1Q9Y5I3 RNU6-934P-201ENST00000365154 107 ntBASIC1.21□□□□□ -2.22
PCDHA1Q9Y5I3 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.21□□□□□ -2.22
PCDHA1Q9Y5I3 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.21□□□□□ -2.22
PCDHA1Q9Y5I3 SNORA4-201ENST00000584302 138 ntBASIC1.21□□□□□ -2.22
PCDHA1Q9Y5I3 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
PCDHA1Q9Y5I3 RNU1-93P-201ENST00000364704 169 ntBASIC1.2□□□□□ -2.22
PCDHA1Q9Y5I3 RNY1P13-201ENST00000365030 105 ntBASIC1.2□□□□□ -2.22
PCDHA1Q9Y5I3 RNU6-949P-201ENST00000384040 107 ntBASIC1.2□□□□□ -2.22
PCDHA1Q9Y5I3 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.2□□□□□ -2.22
PCDHA1Q9Y5I3 MIR1270-201ENST00000459320 83 ntBASIC1.2□□□□□ -2.22
PCDHA1Q9Y5I3 RNU6-94P-201ENST00000607728 107 ntBASIC1.2□□□□□ -2.22
PCDHA1Q9Y5I3 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.19□□□□□ -2.22
PCDHA1Q9Y5I3 Y_RNA.261-201ENST00000364631 102 ntBASIC1.19□□□□□ -2.22
PCDHA1Q9Y5I3 RNA5SP205-201ENST00000364653 136 ntBASIC1.19□□□□□ -2.22
PCDHA1Q9Y5I3 SNORA32-201ENST00000384072 121 ntBASIC1.19□□□□□ -2.22
PCDHA1Q9Y5I3 MIR1285-1-201ENST00000408593 84 ntBASIC1.19□□□□□ -2.22
PCDHA1Q9Y5I3 RPS26P5-201ENST00000418544 335 ntBASIC1.19□□□□□ -2.22
PCDHA1Q9Y5I3 FABP5P4-201ENST00000437203 171 ntBASIC1.19□□□□□ -2.22
PCDHA1Q9Y5I3 snoU13.21-201ENST00000459368 105 ntBASIC1.19□□□□□ -2.22
PCDHA1Q9Y5I3 RNU7-40P-201ENST00000516397 64 ntBASIC1.19□□□□□ -2.22
PCDHA1Q9Y5I3 RNY4P6-201ENST00000363667 96 ntBASIC1.18□□□□□ -2.22
PCDHA1Q9Y5I3 SNORA19-201ENST00000384737 128 ntBASIC1.18□□□□□ -2.22
PCDHA1Q9Y5I3 MIR518E-201ENST00000385252 88 ntBASIC1.18□□□□□ -2.22
PCDHA1Q9Y5I3 SNORD77B-201ENST00000391112 67 ntBASIC1.18□□□□□ -2.22
PCDHA1Q9Y5I3 RNU6-994P-201ENST00000410507 111 ntBASIC1.18□□□□□ -2.22
PCDHA1Q9Y5I3 RNU7-6P-201ENST00000516845 62 ntBASIC1.18□□□□□ -2.22
PCDHA1Q9Y5I3 AC087741.2-201ENST00000619415 172 ntBASIC1.18□□□□□ -2.22
PCDHA1Q9Y5I3 SNORD115-19-201ENST00000363098 82 ntBASIC1.17□□□□□ -2.22
PCDHA1Q9Y5I3 SNORD115-18-201ENST00000363293 82 ntBASIC1.17□□□□□ -2.22
PCDHA1Q9Y5I3 SNORD115-17-201ENST00000364612 82 ntBASIC1.17□□□□□ -2.22
PCDHA1Q9Y5I3 SNORD114-24-201ENST00000365029 72 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 246.1 ms