Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 RNU4-69P-201ENST00000410677 143 ntBASIC1.28□□□□□ -2.2
PCDHA3Q9Y5H8 MIR18B-201ENST00000454574 71 ntBASIC1.28□□□□□ -2.2
PCDHA3Q9Y5H8 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.28□□□□□ -2.2
PCDHA3Q9Y5H8 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.28□□□□□ -2.2
PCDHA3Q9Y5H8 RNU6-1333P-201ENST00000516162 93 ntBASIC1.28□□□□□ -2.2
PCDHA3Q9Y5H8 RNU7-35P-201ENST00000517174 62 ntBASIC1.28□□□□□ -2.2
PCDHA3Q9Y5H8 AC023827.1-201ENST00000569247 97 ntBASIC1.28□□□□□ -2.2
PCDHA3Q9Y5H8 AL662814.1-201ENST00000617364 121 ntBASIC1.28□□□□□ -2.2
PCDHA3Q9Y5H8 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
PCDHA3Q9Y5H8 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.28□□□□□ -2.21
PCDHA3Q9Y5H8 MTND5P18-201ENST00000445624 1801 ntBASIC1.27□□□□□ -2.21
PCDHA3Q9Y5H8 RNU6-342P-201ENST00000384521 104 ntBASIC1.27□□□□□ -2.21
PCDHA3Q9Y5H8 RNU6-939P-201ENST00000384634 107 ntBASIC1.27□□□□□ -2.21
PCDHA3Q9Y5H8 MIR618-201ENST00000385287 98 ntBASIC1.27□□□□□ -2.21
PCDHA3Q9Y5H8 MIR759-201ENST00000390224 91 ntBASIC1.27□□□□□ -2.21
PCDHA3Q9Y5H8 RNA5SP237-201ENST00000410414 113 ntBASIC1.27□□□□□ -2.21
PCDHA3Q9Y5H8 Y_RNA.630-201ENST00000411370 108 ntBASIC1.27□□□□□ -2.21
PCDHA3Q9Y5H8 AL606753.1-201ENST00000427435 87 ntBASIC1.27□□□□□ -2.21
PCDHA3Q9Y5H8 AC022523.2-201ENST00000561045 150 ntBASIC1.27□□□□□ -2.21
PCDHA3Q9Y5H8 MIR548AE2-201ENST00000583456 67 ntBASIC1.27□□□□□ -2.21
PCDHA3Q9Y5H8 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
PCDHA3Q9Y5H8 MIR30D-201ENST00000362283 70 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 Y_RNA.213-201ENST00000364178 111 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 Y_RNA.327-201ENST00000365201 102 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 RNU6-1237P-201ENST00000384777 107 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 MT-TF-201ENST00000387314 71 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 RNU6-1168P-201ENST00000390831 104 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 RNU6-479P-201ENST00000516348 105 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 RNA5SP404-201ENST00000517118 132 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 AC141846.1-201ENST00000568348 142 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 MIR4781-201ENST00000585250 76 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 AL365222.1-201ENST00000614661 98 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 AL353770.2-201ENST00000620024 78 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 U6.95-201ENST00000636931 70 ntBASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.26□□□□□ -2.21
PCDHA3Q9Y5H8 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.25□□□□□ -2.21
PCDHA3Q9Y5H8 Y_RNA.525-201ENST00000384570 113 ntBASIC1.25□□□□□ -2.21
PCDHA3Q9Y5H8 RNU7-79P-201ENST00000516082 62 ntBASIC1.25□□□□□ -2.21
PCDHA3Q9Y5H8 MIR3163-201ENST00000581592 73 ntBASIC1.25□□□□□ -2.21
PCDHA3Q9Y5H8 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.25□□□□□ -2.21
PCDHA3Q9Y5H8 MT-TI-201ENST00000387365 69 ntBASIC1.24□□□□□ -2.21
PCDHA3Q9Y5H8 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.24□□□□□ -2.21
PCDHA3Q9Y5H8 uc_338.6-201ENST00000613544 171 ntBASIC1.24□□□□□ -2.21
PCDHA3Q9Y5H8 Y_RNA.261-201ENST00000364631 102 ntBASIC1.23□□□□□ -2.21
PCDHA3Q9Y5H8 MIR200A-201ENST00000384875 90 ntBASIC1.23□□□□□ -2.21
PCDHA3Q9Y5H8 SNORA4-201ENST00000584302 138 ntBASIC1.23□□□□□ -2.21
PCDHA3Q9Y5H8 RNA5SP205-201ENST00000364653 136 ntBASIC1.22□□□□□ -2.21
PCDHA3Q9Y5H8 RNY1P13-201ENST00000365030 105 ntBASIC1.22□□□□□ -2.21
PCDHA3Q9Y5H8 RNU6-934P-201ENST00000365154 107 ntBASIC1.22□□□□□ -2.21
PCDHA3Q9Y5H8 RNU6-949P-201ENST00000384040 107 ntBASIC1.22□□□□□ -2.21
PCDHA3Q9Y5H8 SNORA32-201ENST00000384072 121 ntBASIC1.22□□□□□ -2.21
PCDHA3Q9Y5H8 SNORA19-201ENST00000384737 128 ntBASIC1.22□□□□□ -2.21
PCDHA3Q9Y5H8 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.22□□□□□ -2.21
PCDHA3Q9Y5H8 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.22□□□□□ -2.21
PCDHA3Q9Y5H8 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.22□□□□□ -2.21
PCDHA3Q9Y5H8 MIR6078-201ENST00000611069 100 ntBASIC1.22□□□□□ -2.21
PCDHA3Q9Y5H8 RNY4P6-201ENST00000363667 96 ntBASIC1.21□□□□□ -2.22
PCDHA3Q9Y5H8 SNORD77B-201ENST00000391112 67 ntBASIC1.21□□□□□ -2.22
PCDHA3Q9Y5H8 MIR1270-201ENST00000459320 83 ntBASIC1.21□□□□□ -2.22
PCDHA3Q9Y5H8 snoU13.21-201ENST00000459368 105 ntBASIC1.21□□□□□ -2.22
PCDHA3Q9Y5H8 RNU6-313P-201ENST00000516317 112 ntBASIC1.21□□□□□ -2.22
PCDHA3Q9Y5H8 RNU7-40P-201ENST00000516397 64 ntBASIC1.21□□□□□ -2.22
PCDHA3Q9Y5H8 RNU7-6P-201ENST00000516845 62 ntBASIC1.21□□□□□ -2.22
PCDHA3Q9Y5H8 RNU6-94P-201ENST00000607728 107 ntBASIC1.21□□□□□ -2.22
PCDHA3Q9Y5H8 AC087741.2-201ENST00000619415 172 ntBASIC1.21□□□□□ -2.22
PCDHA3Q9Y5H8 Y_RNA.353-201ENST00000365440 108 ntBASIC1.2□□□□□ -2.22
PCDHA3Q9Y5H8 RNU6-1154P-201ENST00000391001 104 ntBASIC1.2□□□□□ -2.22
PCDHA3Q9Y5H8 RNU6-994P-201ENST00000410507 111 ntBASIC1.2□□□□□ -2.22
PCDHA3Q9Y5H8 RNU2-51P-201ENST00000410708 197 ntBASIC1.2□□□□□ -2.22
PCDHA3Q9Y5H8 RPS26P5-201ENST00000418544 335 ntBASIC1.2□□□□□ -2.22
PCDHA3Q9Y5H8 FABP5P4-201ENST00000437203 171 ntBASIC1.2□□□□□ -2.22
PCDHA3Q9Y5H8 SNORD115-19-201ENST00000363098 82 ntBASIC1.19□□□□□ -2.22
PCDHA3Q9Y5H8 SNORD115-18-201ENST00000363293 82 ntBASIC1.19□□□□□ -2.22
PCDHA3Q9Y5H8 SNORD115-17-201ENST00000364612 82 ntBASIC1.19□□□□□ -2.22
PCDHA3Q9Y5H8 RNU6-392P-201ENST00000364926 101 ntBASIC1.19□□□□□ -2.22
PCDHA3Q9Y5H8 SNORA22C-201ENST00000384614 134 ntBASIC1.19□□□□□ -2.22
PCDHA3Q9Y5H8 SNORD83.1-201ENST00000411362 77 ntBASIC1.19□□□□□ -2.22
PCDHA3Q9Y5H8 AC067940.1-201ENST00000458411 300 ntBASIC1.19□□□□□ -2.22
PCDHA3Q9Y5H8 U2.22-201ENST00000636441 106 ntBASIC1.19□□□□□ -2.22
PCDHA3Q9Y5H8 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
PCDHA3Q9Y5H8 SNORD114-10-201ENST00000363409 72 ntBASIC1.18□□□□□ -2.22
PCDHA3Q9Y5H8 SNORD114-24-201ENST00000365029 72 ntBASIC1.18□□□□□ -2.22
PCDHA3Q9Y5H8 MIR548D2-201ENST00000384955 97 ntBASIC1.18□□□□□ -2.22
PCDHA3Q9Y5H8 MIR1285-1-201ENST00000408593 84 ntBASIC1.18□□□□□ -2.22
PCDHA3Q9Y5H8 RNU6-735P-201ENST00000410612 107 ntBASIC1.18□□□□□ -2.22
PCDHA3Q9Y5H8 AL359881.1-201ENST00000602916 267 ntBASIC1.18□□□□□ -2.22
PCDHA3Q9Y5H8 FAM71BP1-201ENST00000604431 523 ntBASIC1.18□□□□□ -2.22
PCDHA3Q9Y5H8 AL391516.1-201ENST00000554380 2449 ntBASIC1.18□□□□□ -2.22
PCDHA3Q9Y5H8 MIR1-1-201ENST00000362147 71 ntBASIC1.17□□□□□ -2.22
PCDHA3Q9Y5H8 RNU6-1081P-201ENST00000384537 107 ntBASIC1.17□□□□□ -2.22
PCDHA3Q9Y5H8 U8.15-201ENST00000390947 134 ntBASIC1.17□□□□□ -2.22
PCDHA3Q9Y5H8 MIR548I2-201ENST00000408348 149 ntBASIC1.17□□□□□ -2.22
PCDHA3Q9Y5H8 MIR1827-201ENST00000408549 66 ntBASIC1.17□□□□□ -2.22
PCDHA3Q9Y5H8 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.17□□□□□ -2.22
PCDHA3Q9Y5H8 RPS29P28-201ENST00000446439 141 ntBASIC1.17□□□□□ -2.22
PCDHA3Q9Y5H8 Y_RNA.649-201ENST00000459077 103 ntBASIC1.17□□□□□ -2.22
PCDHA3Q9Y5H8 RNU7-185P-201ENST00000459215 60 ntBASIC1.17□□□□□ -2.22
PCDHA3Q9Y5H8 SNORD124-201ENST00000459577 104 ntBASIC1.17□□□□□ -2.22
PCDHA3Q9Y5H8 SNORD33.1-201ENST00000516213 88 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 168.9 ms