Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 RNA5SP181-201ENST00000410246 98 ntBASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 BX276092.1-201ENST00000427368 251 ntBASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 JTBP1-201ENST00000441314 247 ntBASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 SNORD4B-201ENST00000459083 72 ntBASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 RNA5SP320-201ENST00000516263 124 ntBASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 AC138749.4-201ENST00000563970 127 ntBASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 MIR4287-201ENST00000579398 78 ntBASIC2.21□□□□□ -2.06
HIF3AQ9Y2N7 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 AC062016.1-201ENST00000355719 319 ntBASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 RNU6-478P-201ENST00000363904 110 ntBASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 RNY1P2-201ENST00000364820 117 ntBASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 MIR196B-201ENST00000384852 84 ntBASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 MIR513A1-201ENST00000385138 129 ntBASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 RNU6-129P-201ENST00000391022 107 ntBASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 RNA5SP184-201ENST00000411071 108 ntBASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 AC244023.1-201ENST00000426884 112 ntBASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 AC090255.1-201ENST00000495779 349 ntBASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 AC121758.2-201ENST00000553271 193 ntBASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 MIR4435-1-201ENST00000582552 80 ntBASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 AC242498.1-201ENST00000604134 111 ntBASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HIF3AQ9Y2N7 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 AC016717.2-201ENST00000609089 5141 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 MIR588-201ENST00000384900 83 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 AL359511.1-201ENST00000402970 211 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 RNU7-85P-201ENST00000458851 63 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 RN7SL429P-201ENST00000479090 223 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 RN7SL489P-201ENST00000486185 223 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 RN7SL327P-201ENST00000488659 223 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 RNU6-922P-201ENST00000516753 99 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 RNU6-850P-201ENST00000516934 103 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 MIR3124-201ENST00000582636 67 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 AC067747.1-201ENST00000608026 250 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 RN7SL853P-201ENST00000617250 223 ntBASIC2.19□□□□□ -2.06
HIF3AQ9Y2N7 SNORA25.3-201ENST00000363205 127 ntBASIC2.18□□□□□ -2.06
HIF3AQ9Y2N7 RNA5SP126-201ENST00000365092 109 ntBASIC2.18□□□□□ -2.06
HIF3AQ9Y2N7 RNU6-788P-201ENST00000390967 104 ntBASIC2.18□□□□□ -2.06
HIF3AQ9Y2N7 SNRPGP12-201ENST00000449481 213 ntBASIC2.18□□□□□ -2.06
HIF3AQ9Y2N7 MIR3162-201ENST00000581818 82 ntBASIC2.18□□□□□ -2.06
HIF3AQ9Y2N7 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
HIF3AQ9Y2N7 Y_RNA.788-201ENST00000622394 112 ntBASIC2.18□□□□□ -2.06
HIF3AQ9Y2N7 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HIF3AQ9Y2N7 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.17□□□□□ -2.06
HIF3AQ9Y2N7 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.17□□□□□ -2.06
HIF3AQ9Y2N7 MIR21-201ENST00000362134 72 ntBASIC2.17□□□□□ -2.06
HIF3AQ9Y2N7 RNA5SP508-201ENST00000411327 119 ntBASIC2.17□□□□□ -2.06
HIF3AQ9Y2N7 snoU13.2-201ENST00000459201 104 ntBASIC2.17□□□□□ -2.06
HIF3AQ9Y2N7 MIR3192-201ENST00000584920 77 ntBASIC2.17□□□□□ -2.06
HIF3AQ9Y2N7 PRELID3BP2-201ENST00000605362 201 ntBASIC2.17□□□□□ -2.06
HIF3AQ9Y2N7 U7.4-201ENST00000614961 63 ntBASIC2.17□□□□□ -2.06
HIF3AQ9Y2N7 MIR1291-201ENST00000627649 87 ntBASIC2.17□□□□□ -2.06
HIF3AQ9Y2N7 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HIF3AQ9Y2N7 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 ZNF658B-202ENST00000615961 3375 ntBASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 AL596028.1-201ENST00000326971 197 ntBASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 RNU6-315P-201ENST00000362666 107 ntBASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 RNA5SP48-201ENST00000363969 126 ntBASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 SNORD114-30-201ENST00000364448 72 ntBASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 Y_RNA.508-201ENST00000384502 114 ntBASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 SNORD41-201ENST00000386967 70 ntBASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 MIR5694-201ENST00000581190 76 ntBASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 AL773524.1-201ENST00000614065 229 ntBASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 MIR6740-201ENST00000618268 113 ntBASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.16□□□□□ -2.06
HIF3AQ9Y2N7 Y_RNA.119-201ENST00000363301 96 ntBASIC2.15□□□□□ -2.07
HIF3AQ9Y2N7 SNORA16B-201ENST00000364674 135 ntBASIC2.15□□□□□ -2.07
HIF3AQ9Y2N7 RNU6-439P-201ENST00000384188 106 ntBASIC2.15□□□□□ -2.07
HIF3AQ9Y2N7 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
HIF3AQ9Y2N7 RNU6-205P-201ENST00000390858 107 ntBASIC2.15□□□□□ -2.07
HIF3AQ9Y2N7 Z98742.3-201ENST00000418637 326 ntBASIC2.15□□□□□ -2.07
HIF3AQ9Y2N7 AC108938.1-201ENST00000451204 136 ntBASIC2.15□□□□□ -2.07
HIF3AQ9Y2N7 snoU13.11-201ENST00000459219 104 ntBASIC2.15□□□□□ -2.07
HIF3AQ9Y2N7 AC005908.1-201ENST00000468701 347 ntBASIC2.15□□□□□ -2.07
HIF3AQ9Y2N7 AC004223.1-201ENST00000479840 271 ntBASIC2.15□□□□□ -2.07
HIF3AQ9Y2N7 RNA5SP402-201ENST00000517148 110 ntBASIC2.15□□□□□ -2.07
HIF3AQ9Y2N7 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 RNA5SP68-201ENST00000363885 119 ntBASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 AC244636.1-201ENST00000421152 228 ntBASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 SNORA31.11-201ENST00000516528 139 ntBASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 MIR4796-201ENST00000580742 81 ntBASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 AP000942.3-201ENST00000603702 160 ntBASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 AL357312.1-201ENST00000603879 298 ntBASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 AL512598.1-201ENST00000610158 273 ntBASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 AL096861.1-201ENST00000610899 123 ntBASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 AL137847.3-201ENST00000611521 109 ntBASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 FAS-AS1.1-201ENST00000615327 126 ntBASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 MIR6817-201ENST00000615588 66 ntBASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 WWP1P1-201ENST00000466609 2769 ntBASIC2.14□□□□□ -2.07
HIF3AQ9Y2N7 RNU4-82P-201ENST00000362443 140 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 200.8 ms