Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC113410.1-201ENST00000505029 247 ntBASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 RNU2-35P-201ENST00000516446 142 ntBASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 RNY4P20-201ENST00000516678 93 ntBASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 AL670379.3-201ENST00000605040 251 ntBASIC1.41□□□□□ -2.18
LIMCH1Q9UPQ0 Y_RNA.531-201ENST00000384589 121 ntBASIC1.4□□□□□ -2.19
LIMCH1Q9UPQ0 SNORA75.2-201ENST00000391138 150 ntBASIC1.4□□□□□ -2.19
LIMCH1Q9UPQ0 SNORA75.3-201ENST00000391231 150 ntBASIC1.4□□□□□ -2.19
LIMCH1Q9UPQ0 AP1B1P2-201ENST00000416196 106 ntBASIC1.4□□□□□ -2.19
LIMCH1Q9UPQ0 AC244023.1-201ENST00000426884 112 ntBASIC1.4□□□□□ -2.19
LIMCH1Q9UPQ0 RNU7-123P-201ENST00000515911 60 ntBASIC1.4□□□□□ -2.19
LIMCH1Q9UPQ0 AC242498.1-201ENST00000604134 111 ntBASIC1.4□□□□□ -2.19
LIMCH1Q9UPQ0 MIR26B-201ENST00000362251 77 ntBASIC1.39□□□□□ -2.19
LIMCH1Q9UPQ0 RNA5SP327-201ENST00000362494 101 ntBASIC1.39□□□□□ -2.19
LIMCH1Q9UPQ0 RNU6-1325P-201ENST00000364905 105 ntBASIC1.39□□□□□ -2.19
LIMCH1Q9UPQ0 Y_RNA.330-201ENST00000365230 109 ntBASIC1.39□□□□□ -2.19
LIMCH1Q9UPQ0 SNORD20-201ENST00000384550 80 ntBASIC1.39□□□□□ -2.19
LIMCH1Q9UPQ0 MIR222-201ENST00000384992 110 ntBASIC1.39□□□□□ -2.19
LIMCH1Q9UPQ0 MIR150-201ENST00000385048 84 ntBASIC1.39□□□□□ -2.19
LIMCH1Q9UPQ0 AL512326.2-201ENST00000426359 151 ntBASIC1.39□□□□□ -2.19
LIMCH1Q9UPQ0 snoU13.2-201ENST00000459201 104 ntBASIC1.39□□□□□ -2.19
LIMCH1Q9UPQ0 SNORD33.1-201ENST00000516213 88 ntBASIC1.39□□□□□ -2.19
LIMCH1Q9UPQ0 AC004812.1-201ENST00000540773 146 ntBASIC1.39□□□□□ -2.19
LIMCH1Q9UPQ0 MTND5P34-201ENST00000568888 325 ntBASIC1.39□□□□□ -2.19
LIMCH1Q9UPQ0 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 RNY4P6-201ENST00000363667 96 ntBASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 Y_RNA.168-201ENST00000363740 102 ntBASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 SNORA7.1-201ENST00000363750 139 ntBASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 Y_RNA.213-201ENST00000364178 111 ntBASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 SNORD113.3-201ENST00000364630 78 ntBASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 RNU6-580P-201ENST00000365159 107 ntBASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 RNU6-215P-201ENST00000365169 102 ntBASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 MIR548A1-201ENST00000385041 97 ntBASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 SNORD111-201ENST00000408139 94 ntBASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 AL157834.3-201ENST00000615543 103 ntBASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
LIMCH1Q9UPQ0 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.37□□□□□ -2.19
LIMCH1Q9UPQ0 Y_RNA.224-201ENST00000364308 111 ntBASIC1.37□□□□□ -2.19
LIMCH1Q9UPQ0 SNORD116-21-201ENST00000384507 92 ntBASIC1.37□□□□□ -2.19
LIMCH1Q9UPQ0 RNU6-1104P-201ENST00000384723 104 ntBASIC1.37□□□□□ -2.19
LIMCH1Q9UPQ0 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.37□□□□□ -2.19
LIMCH1Q9UPQ0 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 Y_RNA.171-201ENST00000363760 102 ntBASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 RNU6-654P-201ENST00000364373 107 ntBASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 RNU6-429P-201ENST00000384582 108 ntBASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 MIR588-201ENST00000384900 83 ntBASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 MIR7-2-201ENST00000384970 110 ntBASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 SNORD12C-201ENST00000386307 89 ntBASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 RNU7-62P-201ENST00000458856 62 ntBASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 RNA5SP33-201ENST00000516687 98 ntBASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 RNU6-919P-201ENST00000516731 104 ntBASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 RNU6-1258P-201ENST00000516911 111 ntBASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 MIR6129-201ENST00000616087 109 ntBASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 AC027335.2-201ENST00000624030 375 ntBASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
LIMCH1Q9UPQ0 SNORA25.8-201ENST00000364831 128 ntBASIC1.35□□□□□ -2.19
LIMCH1Q9UPQ0 SNORA2B-201ENST00000384583 137 ntBASIC1.35□□□□□ -2.19
LIMCH1Q9UPQ0 RNA5SP237-201ENST00000410414 113 ntBASIC1.35□□□□□ -2.19
LIMCH1Q9UPQ0 AC063976.4-201ENST00000421971 163 ntBASIC1.35□□□□□ -2.19
LIMCH1Q9UPQ0 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.35□□□□□ -2.19
LIMCH1Q9UPQ0 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.35□□□□□ -2.19
LIMCH1Q9UPQ0 AC036111.3-201ENST00000526389 112 ntBASIC1.35□□□□□ -2.19
LIMCH1Q9UPQ0 AC007012.1-201ENST00000567192 175 ntBASIC1.35□□□□□ -2.19
LIMCH1Q9UPQ0 MIR4679-2-201ENST00000578358 77 ntBASIC1.35□□□□□ -2.19
LIMCH1Q9UPQ0 MIR3163-201ENST00000581592 73 ntBASIC1.35□□□□□ -2.19
LIMCH1Q9UPQ0 AC106800.4-201ENST00000614905 153 ntBASIC1.35□□□□□ -2.19
LIMCH1Q9UPQ0 MT-TI-201ENST00000387365 69 ntBASIC1.34□□□□□ -2.19
LIMCH1Q9UPQ0 RNU6-205P-201ENST00000390858 107 ntBASIC1.34□□□□□ -2.19
LIMCH1Q9UPQ0 MIR1285-1-201ENST00000408593 84 ntBASIC1.34□□□□□ -2.19
LIMCH1Q9UPQ0 AL035461.1-201ENST00000421490 332 ntBASIC1.34□□□□□ -2.19
LIMCH1Q9UPQ0 RPS23P4-201ENST00000487908 423 ntBASIC1.34□□□□□ -2.19
LIMCH1Q9UPQ0 AC019288.1-201ENST00000557918 224 ntBASIC1.34□□□□□ -2.19
LIMCH1Q9UPQ0 AC022523.2-201ENST00000561045 150 ntBASIC1.34□□□□□ -2.19
LIMCH1Q9UPQ0 AL353770.2-201ENST00000620024 78 ntBASIC1.34□□□□□ -2.19
LIMCH1Q9UPQ0 AC008163.1-202ENST00000636004 2889 ntBASIC1.34□□□□□ -2.2
LIMCH1Q9UPQ0 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.2
LIMCH1Q9UPQ0 RNU6-880P-201ENST00000384526 107 ntBASIC1.33□□□□□ -2.2
LIMCH1Q9UPQ0 MIR563-201ENST00000385080 79 ntBASIC1.33□□□□□ -2.2
LIMCH1Q9UPQ0 RNU4-69P-201ENST00000410677 143 ntBASIC1.33□□□□□ -2.2
LIMCH1Q9UPQ0 RNU6-1086P-201ENST00000410930 100 ntBASIC1.33□□□□□ -2.2
LIMCH1Q9UPQ0 AC002429.1-201ENST00000437672 148 ntBASIC1.33□□□□□ -2.2
LIMCH1Q9UPQ0 MIR18B-201ENST00000454574 71 ntBASIC1.33□□□□□ -2.2
LIMCH1Q9UPQ0 RNU6-589P-201ENST00000516485 107 ntBASIC1.33□□□□□ -2.2
LIMCH1Q9UPQ0 RNU7-6P-201ENST00000516845 62 ntBASIC1.33□□□□□ -2.2
LIMCH1Q9UPQ0 Y_RNA.709-201ENST00000516952 92 ntBASIC1.33□□□□□ -2.2
LIMCH1Q9UPQ0 AC012676.2-201ENST00000619258 186 ntBASIC1.33□□□□□ -2.2
LIMCH1Q9UPQ0 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
LIMCH1Q9UPQ0 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.32□□□□□ -2.2
LIMCH1Q9UPQ0 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
LIMCH1Q9UPQ0 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
LIMCH1Q9UPQ0 Y_RNA.35-201ENST00000362601 101 ntBASIC1.32□□□□□ -2.2
LIMCH1Q9UPQ0 Y_RNA.470-201ENST00000384307 117 ntBASIC1.32□□□□□ -2.2
LIMCH1Q9UPQ0 SNORA18-201ENST00000384416 132 ntBASIC1.32□□□□□ -2.2
LIMCH1Q9UPQ0 MIR19B1-201ENST00000384829 87 ntBASIC1.32□□□□□ -2.2
LIMCH1Q9UPQ0 MT-TF-201ENST00000387314 71 ntBASIC1.32□□□□□ -2.2
LIMCH1Q9UPQ0 RNU6-1165P-201ENST00000410119 107 ntBASIC1.32□□□□□ -2.2
LIMCH1Q9UPQ0 RNU6-412P-201ENST00000516434 106 ntBASIC1.32□□□□□ -2.2
LIMCH1Q9UPQ0 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.32□□□□□ -2.2
LIMCH1Q9UPQ0 Y_RNA.81-201ENST00000362997 102 ntBASIC1.31□□□□□ -2.2
LIMCH1Q9UPQ0 RNY4P18-201ENST00000391107 89 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 254.3 ms