Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNA5SP193-201ENST00000410353 107 ntBASIC0.52□□□□□ -2.33
CPSF3Q9UKF6 AL157398.1-201ENST00000452981 186 ntBASIC0.52□□□□□ -2.33
CPSF3Q9UKF6 AC002350.1-201ENST00000490759 375 ntBASIC0.52□□□□□ -2.33
CPSF3Q9UKF6 RNA5SP236-201ENST00000516169 116 ntBASIC0.52□□□□□ -2.33
CPSF3Q9UKF6 RN7SKP12-201ENST00000516275 143 ntBASIC0.52□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.757-201ENST00000578934 114 ntBASIC0.52□□□□□ -2.33
CPSF3Q9UKF6 RNU6-349P-201ENST00000362402 107 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.42-201ENST00000362660 108 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 RNU6-312P-201ENST00000364629 107 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 RNU4-45P-201ENST00000365469 141 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 RNY1P6-201ENST00000384193 109 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 SNORA18-201ENST00000384416 132 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 RNU6-342P-201ENST00000384521 104 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 RNU4-83P-201ENST00000410863 133 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 AC096949.1-201ENST00000412047 152 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 AC114737.2-201ENST00000421583 173 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 AC107027.2-201ENST00000512197 115 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 RNU6-229P-201ENST00000516614 102 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 MIR4711-201ENST00000578274 70 ntBASIC0.51□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.171-201ENST00000363760 102 ntBASIC0.5□□□□□ -2.33
CPSF3Q9UKF6 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.5□□□□□ -2.33
CPSF3Q9UKF6 MIR5087-201ENST00000635826 76 ntBASIC0.5□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.118-201ENST00000363300 101 ntBASIC0.49□□□□□ -2.33
CPSF3Q9UKF6 SNORD18A-201ENST00000363753 72 ntBASIC0.49□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.588-201ENST00000391254 102 ntBASIC0.49□□□□□ -2.33
CPSF3Q9UKF6 RNA5SP144-201ENST00000410846 116 ntBASIC0.49□□□□□ -2.33
CPSF3Q9UKF6 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.49□□□□□ -2.33
CPSF3Q9UKF6 RPL39P25-201ENST00000449384 154 ntBASIC0.49□□□□□ -2.33
CPSF3Q9UKF6 RNU6-448P-201ENST00000517052 107 ntBASIC0.49□□□□□ -2.33
CPSF3Q9UKF6 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.49□□□□□ -2.33
CPSF3Q9UKF6 RNU6-379P-201ENST00000363813 104 ntBASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.297-201ENST00000364950 91 ntBASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 RNU6-949P-201ENST00000384040 107 ntBASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.515-201ENST00000384535 112 ntBASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 MIR598-201ENST00000384868 97 ntBASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.617-201ENST00000410920 90 ntBASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.644-201ENST00000459006 113 ntBASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.674-201ENST00000516362 113 ntBASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 RNU6-1271P-201ENST00000517049 105 ntBASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 PVT1_3.1-201ENST00000620853 95 ntBASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 AC078938.1-201ENST00000620993 318 ntBASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 AC243829.3-201ENST00000622177 108 ntBASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.48□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.13-201ENST00000362403 112 ntBASIC0.47□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.188-201ENST00000363952 111 ntBASIC0.47□□□□□ -2.33
CPSF3Q9UKF6 RNU6-818P-201ENST00000364837 108 ntBASIC0.47□□□□□ -2.33
CPSF3Q9UKF6 RNY1P13-201ENST00000365030 105 ntBASIC0.47□□□□□ -2.33
CPSF3Q9UKF6 Y_RNA.337-201ENST00000365312 102 ntBASIC0.47□□□□□ -2.33
CPSF3Q9UKF6 RNU6-893P-201ENST00000458841 100 ntBASIC0.47□□□□□ -2.33
CPSF3Q9UKF6 AC141273.2-201ENST00000618989 130 ntBASIC0.47□□□□□ -2.33
CPSF3Q9UKF6 RNU6-403P-201ENST00000363163 104 ntBASIC0.46□□□□□ -2.34
CPSF3Q9UKF6 Y_RNA.470-201ENST00000384307 117 ntBASIC0.46□□□□□ -2.34
CPSF3Q9UKF6 RNU6-679P-201ENST00000391003 106 ntBASIC0.46□□□□□ -2.34
CPSF3Q9UKF6 SNORA75.5-201ENST00000391291 81 ntBASIC0.46□□□□□ -2.34
CPSF3Q9UKF6 RNU5E-9P-201ENST00000411164 104 ntBASIC0.46□□□□□ -2.34
CPSF3Q9UKF6 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.46□□□□□ -2.34
CPSF3Q9UKF6 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.46□□□□□ -2.34
CPSF3Q9UKF6 SNORA68.3-201ENST00000515906 83 ntBASIC0.46□□□□□ -2.34
CPSF3Q9UKF6 MIR4491-201ENST00000581087 68 ntBASIC0.46□□□□□ -2.34
CPSF3Q9UKF6 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.46□□□□□ -2.34
CPSF3Q9UKF6 Y_RNA.497-201ENST00000384447 98 ntBASIC0.45□□□□□ -2.34
CPSF3Q9UKF6 RNU6-1086P-201ENST00000410930 100 ntBASIC0.45□□□□□ -2.34
CPSF3Q9UKF6 RNA5SP94-201ENST00000516917 108 ntBASIC0.45□□□□□ -2.34
CPSF3Q9UKF6 RNU2-60P-201ENST00000517290 128 ntBASIC0.45□□□□□ -2.34
CPSF3Q9UKF6 AP003327.1-201ENST00000529684 127 ntBASIC0.45□□□□□ -2.34
CPSF3Q9UKF6 AC072026.1-201ENST00000605023 201 ntBASIC0.45□□□□□ -2.34
CPSF3Q9UKF6 MIR6082-201ENST00000613604 109 ntBASIC0.45□□□□□ -2.34
CPSF3Q9UKF6 AL589743.1-201ENST00000551932 2712 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 RNY1P11-201ENST00000363759 113 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 RNA5SP117-201ENST00000365294 118 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 Y_RNA.401-201ENST00000383965 117 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 MT-TG-201ENST00000387429 68 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 RNU6-588P-201ENST00000410281 105 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 RNU6-388P-201ENST00000517012 105 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 RNU6-389P-201ENST00000517048 105 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 AP002392.1-201ENST00000537692 208 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 MIR3678-201ENST00000578455 94 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 AC092634.7-201ENST00000621022 103 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 MIR3658-201ENST00000636291 56 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 MIR6844-201ENST00000637122 62 ntBASIC0.44□□□□□ -2.34
CPSF3Q9UKF6 RNU4-84P-201ENST00000364200 139 ntBASIC0.43□□□□□ -2.34
CPSF3Q9UKF6 RNA5SP517-201ENST00000364724 117 ntBASIC0.43□□□□□ -2.34
CPSF3Q9UKF6 RNU6-239P-201ENST00000390990 99 ntBASIC0.43□□□□□ -2.34
CPSF3Q9UKF6 Y_RNA.793-201ENST00000411222 111 ntBASIC0.43□□□□□ -2.34
CPSF3Q9UKF6 AL022718.1-201ENST00000412004 84 ntBASIC0.43□□□□□ -2.34
CPSF3Q9UKF6 RNU7-113P-201ENST00000459273 62 ntBASIC0.43□□□□□ -2.34
CPSF3Q9UKF6 RNU7-79P-201ENST00000516082 62 ntBASIC0.43□□□□□ -2.34
CPSF3Q9UKF6 RNU7-121P-201ENST00000516604 62 ntBASIC0.43□□□□□ -2.34
CPSF3Q9UKF6 RNU7-35P-201ENST00000517174 62 ntBASIC0.43□□□□□ -2.34
CPSF3Q9UKF6 AC133485.4-201ENST00000561835 220 ntBASIC0.43□□□□□ -2.34
CPSF3Q9UKF6 MIR3646-201ENST00000578301 84 ntBASIC0.43□□□□□ -2.34
CPSF3Q9UKF6 Y_RNA.120-201ENST00000363304 110 ntBASIC0.42□□□□□ -2.34
CPSF3Q9UKF6 RNU6-690P-201ENST00000365242 106 ntBASIC0.42□□□□□ -2.34
CPSF3Q9UKF6 Y_RNA.357-201ENST00000365487 109 ntBASIC0.42□□□□□ -2.34
CPSF3Q9UKF6 SNORA50A-201ENST00000384225 134 ntBASIC0.42□□□□□ -2.34
CPSF3Q9UKF6 SNORA72.6-201ENST00000384520 129 ntBASIC0.42□□□□□ -2.34
CPSF3Q9UKF6 AL512326.2-201ENST00000426359 151 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms