Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNU7-35P-201ENST00000517174 62 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 MIR4679-2-201ENST00000578358 77 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 SEPT14P17-201ENST00000617978 177 ntBASIC1.57□□□□□ -2.16
PCIF1Q9H4Z3 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.56□□□□□ -2.16
PCIF1Q9H4Z3 Y_RNA.281-201ENST00000364774 94 ntBASIC1.56□□□□□ -2.16
PCIF1Q9H4Z3 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.56□□□□□ -2.16
PCIF1Q9H4Z3 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.56□□□□□ -2.16
PCIF1Q9H4Z3 Y_RNA.773-201ENST00000607168 90 ntBASIC1.56□□□□□ -2.16
PCIF1Q9H4Z3 uc_338.6-201ENST00000613544 171 ntBASIC1.56□□□□□ -2.16
PCIF1Q9H4Z3 MIR1255B1-201ENST00000636325 63 ntBASIC1.56□□□□□ -2.16
PCIF1Q9H4Z3 SNORA63.5-201ENST00000363548 123 ntBASIC1.55□□□□□ -2.16
PCIF1Q9H4Z3 RNU6-44P-201ENST00000384045 107 ntBASIC1.55□□□□□ -2.16
PCIF1Q9H4Z3 MIR563-201ENST00000385080 79 ntBASIC1.55□□□□□ -2.16
PCIF1Q9H4Z3 RNU6-910P-201ENST00000390844 107 ntBASIC1.55□□□□□ -2.16
PCIF1Q9H4Z3 SNORD77B-201ENST00000391112 67 ntBASIC1.55□□□□□ -2.16
PCIF1Q9H4Z3 RNA5SP237-201ENST00000410414 113 ntBASIC1.55□□□□□ -2.16
PCIF1Q9H4Z3 RNU7-62P-201ENST00000458856 62 ntBASIC1.55□□□□□ -2.16
PCIF1Q9H4Z3 RNU6-1053P-201ENST00000515930 101 ntBASIC1.55□□□□□ -2.16
PCIF1Q9H4Z3 snoU13.31-201ENST00000607291 104 ntBASIC1.55□□□□□ -2.16
PCIF1Q9H4Z3 AL662814.1-201ENST00000617364 121 ntBASIC1.55□□□□□ -2.16
PCIF1Q9H4Z3 Y_RNA.85-201ENST00000363014 111 ntBASIC1.54□□□□□ -2.16
PCIF1Q9H4Z3 Y_RNA.330-201ENST00000365230 109 ntBASIC1.54□□□□□ -2.16
PCIF1Q9H4Z3 RNU6-616P-201ENST00000384353 107 ntBASIC1.54□□□□□ -2.16
PCIF1Q9H4Z3 RNA5SP61-201ENST00000516453 100 ntBASIC1.54□□□□□ -2.16
PCIF1Q9H4Z3 AC141846.1-201ENST00000568348 142 ntBASIC1.54□□□□□ -2.16
PCIF1Q9H4Z3 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.54□□□□□ -2.16
PCIF1Q9H4Z3 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.53□□□□□ -2.16
PCIF1Q9H4Z3 RNU6-1165P-201ENST00000410119 107 ntBASIC1.53□□□□□ -2.16
PCIF1Q9H4Z3 RNU6-1086P-201ENST00000410930 100 ntBASIC1.53□□□□□ -2.16
PCIF1Q9H4Z3 RNU7-79P-201ENST00000516082 62 ntBASIC1.53□□□□□ -2.16
PCIF1Q9H4Z3 RNU1-92P-201ENST00000517017 135 ntBASIC1.53□□□□□ -2.16
PCIF1Q9H4Z3 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.53□□□□□ -2.16
PCIF1Q9H4Z3 AL589743.1-201ENST00000551932 2712 ntBASIC1.53□□□□□ -2.17
PCIF1Q9H4Z3 SNORA63.4-201ENST00000362763 126 ntBASIC1.52□□□□□ -2.17
PCIF1Q9H4Z3 RNU6-580P-201ENST00000365159 107 ntBASIC1.52□□□□□ -2.17
PCIF1Q9H4Z3 ZNF209P-201ENST00000593450 2304 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 MIR337-201ENST00000362281 93 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 MIR30D-201ENST00000362283 70 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 Y_RNA.81-201ENST00000362997 102 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 Y_RNA.168-201ENST00000363740 102 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 RNU6-1107P-201ENST00000364817 104 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 RNY1P13-201ENST00000365030 105 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 SNORA2B-201ENST00000384583 137 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 BTF3P4-201ENST00000418852 495 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 AL591704.2-201ENST00000421658 181 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 RNU7-95P-201ENST00000459222 64 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 RNU7-21P-201ENST00000459430 62 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 SNORD79.1-201ENST00000516069 84 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 RNU6-412P-201ENST00000516434 106 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 SNORD67.1-201ENST00000516618 108 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 FAM71BP1-201ENST00000604431 523 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 AL512598.1-201ENST00000610158 273 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 AL162726.3-218ENST00000636401 95 ntBASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
PCIF1Q9H4Z3 SNORA22-201ENST00000383907 134 ntBASIC1.5□□□□□ -2.17
PCIF1Q9H4Z3 SNORA80D-201ENST00000384488 135 ntBASIC1.5□□□□□ -2.17
PCIF1Q9H4Z3 RNU1-98P-201ENST00000458992 160 ntBASIC1.5□□□□□ -2.17
PCIF1Q9H4Z3 snoU13.21-201ENST00000459368 105 ntBASIC1.5□□□□□ -2.17
PCIF1Q9H4Z3 RPL39P34-201ENST00000477141 156 ntBASIC1.5□□□□□ -2.17
PCIF1Q9H4Z3 MIR206-201ENST00000384872 86 ntBASIC1.49□□□□□ -2.17
PCIF1Q9H4Z3 RNU6-816P-201ENST00000390914 107 ntBASIC1.49□□□□□ -2.17
PCIF1Q9H4Z3 RNU6-1268P-201ENST00000391214 107 ntBASIC1.49□□□□□ -2.17
PCIF1Q9H4Z3 RNU6-1239P-201ENST00000391310 107 ntBASIC1.49□□□□□ -2.17
PCIF1Q9H4Z3 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.49□□□□□ -2.17
PCIF1Q9H4Z3 AP1B1P2-201ENST00000416196 106 ntBASIC1.49□□□□□ -2.17
PCIF1Q9H4Z3 RNU6-970P-201ENST00000516312 107 ntBASIC1.49□□□□□ -2.17
PCIF1Q9H4Z3 RNU7-137P-201ENST00000516788 62 ntBASIC1.49□□□□□ -2.17
PCIF1Q9H4Z3 AC036111.3-201ENST00000526389 112 ntBASIC1.49□□□□□ -2.17
PCIF1Q9H4Z3 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.49□□□□□ -2.17
PCIF1Q9H4Z3 RNA5SP327-201ENST00000362494 101 ntBASIC1.48□□□□□ -2.17
PCIF1Q9H4Z3 Y_RNA.49-201ENST00000362714 112 ntBASIC1.48□□□□□ -2.17
PCIF1Q9H4Z3 RNY1P10-201ENST00000363268 113 ntBASIC1.48□□□□□ -2.17
PCIF1Q9H4Z3 RNU4-67P-201ENST00000364569 141 ntBASIC1.48□□□□□ -2.17
PCIF1Q9H4Z3 U8.6-201ENST00000364939 135 ntBASIC1.48□□□□□ -2.17
PCIF1Q9H4Z3 RNU6-949P-201ENST00000384040 107 ntBASIC1.48□□□□□ -2.17
PCIF1Q9H4Z3 RNU6-1307P-201ENST00000391012 103 ntBASIC1.48□□□□□ -2.17
PCIF1Q9H4Z3 SNORA70.22-201ENST00000517160 124 ntBASIC1.48□□□□□ -2.17
PCIF1Q9H4Z3 AC068339.1-201ENST00000526965 141 ntBASIC1.48□□□□□ -2.17
PCIF1Q9H4Z3 AC023827.1-201ENST00000569247 97 ntBASIC1.48□□□□□ -2.17
PCIF1Q9H4Z3 SNORA4-201ENST00000584302 138 ntBASIC1.48□□□□□ -2.17
PCIF1Q9H4Z3 uc_338.28-201ENST00000612082 187 ntBASIC1.48□□□□□ -2.17
PCIF1Q9H4Z3 Y_RNA.4-201ENST00000362333 112 ntBASIC1.47□□□□□ -2.17
PCIF1Q9H4Z3 RNU6-755P-201ENST00000364400 103 ntBASIC1.47□□□□□ -2.17
PCIF1Q9H4Z3 SNORD113.3-201ENST00000364630 78 ntBASIC1.47□□□□□ -2.17
PCIF1Q9H4Z3 Y_RNA.309-201ENST00000365046 111 ntBASIC1.47□□□□□ -2.17
PCIF1Q9H4Z3 Y_RNA.323-201ENST00000365157 109 ntBASIC1.47□□□□□ -2.17
PCIF1Q9H4Z3 RPL39P25-201ENST00000449384 154 ntBASIC1.47□□□□□ -2.17
PCIF1Q9H4Z3 RNU6-363P-201ENST00000362895 105 ntBASIC1.46□□□□□ -2.18
PCIF1Q9H4Z3 Y_RNA.116-201ENST00000363292 103 ntBASIC1.46□□□□□ -2.18
PCIF1Q9H4Z3 RNU6-1014P-201ENST00000383940 103 ntBASIC1.46□□□□□ -2.18
PCIF1Q9H4Z3 RNU6-997P-201ENST00000384725 107 ntBASIC1.46□□□□□ -2.18
PCIF1Q9H4Z3 MT-TF-201ENST00000387314 71 ntBASIC1.46□□□□□ -2.18
PCIF1Q9H4Z3 MIR1912-201ENST00000410389 80 ntBASIC1.46□□□□□ -2.18
PCIF1Q9H4Z3 MRPL35P3-201ENST00000421557 364 ntBASIC1.46□□□□□ -2.18
PCIF1Q9H4Z3 AL353813.1-201ENST00000440700 253 ntBASIC1.46□□□□□ -2.18
PCIF1Q9H4Z3 RNU1-123P-201ENST00000458950 160 ntBASIC1.46□□□□□ -2.18
PCIF1Q9H4Z3 RNU7-90P-201ENST00000459216 62 ntBASIC1.46□□□□□ -2.18
PCIF1Q9H4Z3 RNU7-2P-201ENST00000516096 62 ntBASIC1.46□□□□□ -2.18
PCIF1Q9H4Z3 RNU6-521P-201ENST00000516663 105 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 177 ms