Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 MIR1270-201ENST00000459320 83 ntBASIC1.82□□□□□ -2.12
NKX2-4Q9H2Z4 MIR4422-201ENST00000581938 83 ntBASIC1.82□□□□□ -2.12
NKX2-4Q9H2Z4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.82□□□□□ -2.12
NKX2-4Q9H2Z4 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
NKX2-4Q9H2Z4 AP000553.5-201ENST00000641933 54 ntBASIC1.82□□□□□ -2.12
NKX2-4Q9H2Z4 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 Y_RNA.155-201ENST00000363632 101 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 RNU4-67P-201ENST00000364569 141 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-32P-201ENST00000383948 107 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-756P-201ENST00000383997 107 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 RNU4-52P-201ENST00000384209 138 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-13P-201ENST00000384248 107 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-12P-201ENST00000384604 107 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-41P-201ENST00000384741 107 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-1237P-201ENST00000384777 107 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 RNU1-78P-201ENST00000391248 165 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 MIR1302-7-201ENST00000408841 72 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 RNA5SP237-201ENST00000410414 113 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 RNA5SP102-201ENST00000516865 106 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 AP000753.3-201ENST00000604083 169 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 FAM71BP1-201ENST00000604431 523 ntBASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
NKX2-4Q9H2Z4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 MIR103A2-201ENST00000362154 78 ntBASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-766P-201ENST00000362478 107 ntBASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-363P-201ENST00000362895 105 ntBASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 SNORA7.1-201ENST00000363750 139 ntBASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-60P-201ENST00000364792 103 ntBASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-409P-201ENST00000384114 104 ntBASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 snoU13.25-201ENST00000458945 104 ntBASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 RNA5SP220-201ENST00000516298 104 ntBASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 MIR2115-201ENST00000516657 100 ntBASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 RNU7-35P-201ENST00000517174 62 ntBASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 AL512310.8-201ENST00000550183 120 ntBASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.8□□□□□ -2.12
NKX2-4Q9H2Z4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
NKX2-4Q9H2Z4 AL161722.3-201ENST00000605789 2983 ntBASIC1.79□□□□□ -2.12
NKX2-4Q9H2Z4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-733P-201ENST00000410759 104 ntBASIC1.79□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-1086P-201ENST00000410930 100 ntBASIC1.79□□□□□ -2.12
NKX2-4Q9H2Z4 RNU1-123P-201ENST00000458950 160 ntBASIC1.79□□□□□ -2.12
NKX2-4Q9H2Z4 RN7SL274P-201ENST00000492268 272 ntBASIC1.79□□□□□ -2.12
NKX2-4Q9H2Z4 RNA5SP264-201ENST00000363115 107 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 RNA5SP138-201ENST00000365098 114 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 Y_RNA.328-201ENST00000365208 113 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 Y_RNA.495-201ENST00000384435 112 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 MIR934-201ENST00000401241 83 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 HMGN2P38-201ENST00000423806 265 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 AC244023.1-201ENST00000426884 112 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 RNU7-79P-201ENST00000516082 62 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-168P-201ENST00000516189 101 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 RNU11-2P-201ENST00000516898 142 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 RNU1-92P-201ENST00000517017 135 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 RNU6-165P-201ENST00000517170 99 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 AC141557.1-201ENST00000540982 400 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 AC242498.1-201ENST00000604134 111 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 AL157834.3-201ENST00000615543 103 ntBASIC1.78□□□□□ -2.12
NKX2-4Q9H2Z4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 SNORA7.5-201ENST00000410672 110 ntBASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 RPS27P16-201ENST00000425758 201 ntBASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 RN7SKP88-201ENST00000516847 250 ntBASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 MIR4419B-201ENST00000577260 68 ntBASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 MIR4264-201ENST00000583520 66 ntBASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 7SK.8-201ENST00000612110 250 ntBASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 7SK.11-201ENST00000615477 250 ntBASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 7SK.13-201ENST00000622040 250 ntBASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.77□□□□□ -2.13
NKX2-4Q9H2Z4 SNORD114-22-201ENST00000365423 72 ntBASIC1.76□□□□□ -2.13
NKX2-4Q9H2Z4 MIR588-201ENST00000384900 83 ntBASIC1.76□□□□□ -2.13
NKX2-4Q9H2Z4 MT-TN-201ENST00000387400 73 ntBASIC1.76□□□□□ -2.13
NKX2-4Q9H2Z4 MIR1185-1-201ENST00000408598 86 ntBASIC1.76□□□□□ -2.13
NKX2-4Q9H2Z4 snoU13.2-201ENST00000459201 104 ntBASIC1.76□□□□□ -2.13
NKX2-4Q9H2Z4 RNU6-521P-201ENST00000516663 105 ntBASIC1.76□□□□□ -2.13
NKX2-4Q9H2Z4 RNA5SP364-201ENST00000516938 78 ntBASIC1.76□□□□□ -2.13
NKX2-4Q9H2Z4 AP003716.2-201ENST00000528260 108 ntBASIC1.76□□□□□ -2.13
NKX2-4Q9H2Z4 MIR4448-201ENST00000584360 86 ntBASIC1.76□□□□□ -2.13
NKX2-4Q9H2Z4 Y_RNA.78-201ENST00000362970 110 ntBASIC1.75□□□□□ -2.13
NKX2-4Q9H2Z4 SNORA67.6-201ENST00000391093 99 ntBASIC1.75□□□□□ -2.13
NKX2-4Q9H2Z4 RNA5SP89-201ENST00000410300 108 ntBASIC1.75□□□□□ -2.13
NKX2-4Q9H2Z4 RNA5SP338-201ENST00000410495 85 ntBASIC1.75□□□□□ -2.13
NKX2-4Q9H2Z4 AL662814.1-201ENST00000617364 121 ntBASIC1.75□□□□□ -2.13
NKX2-4Q9H2Z4 MIR6516-201ENST00000630554 81 ntBASIC1.75□□□□□ -2.13
NKX2-4Q9H2Z4 RNU4-36P-201ENST00000364294 144 ntBASIC1.74□□□□□ -2.13
NKX2-4Q9H2Z4 SNORD115-35-201ENST00000365122 82 ntBASIC1.74□□□□□ -2.13
NKX2-4Q9H2Z4 Y_RNA.360-201ENST00000365512 102 ntBASIC1.74□□□□□ -2.13
NKX2-4Q9H2Z4 RNU6-205P-201ENST00000390858 107 ntBASIC1.74□□□□□ -2.13
NKX2-4Q9H2Z4 RNU7-2P-201ENST00000516096 62 ntBASIC1.74□□□□□ -2.13
NKX2-4Q9H2Z4 SNORD67.1-201ENST00000516618 108 ntBASIC1.74□□□□□ -2.13
NKX2-4Q9H2Z4 AC141846.1-201ENST00000568348 142 ntBASIC1.74□□□□□ -2.13
NKX2-4Q9H2Z4 AC024614.2-201ENST00000577584 372 ntBASIC1.74□□□□□ -2.13
NKX2-4Q9H2Z4 MIR4421-201ENST00000578133 69 ntBASIC1.74□□□□□ -2.13
NKX2-4Q9H2Z4 MIR4694-201ENST00000578534 80 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 232.4 ms