Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU6-1082P-201ENST00000364574 107 ntBASIC0.64□□□□□ -2.31
CCDC3Q9BQI4 RNU6-818P-201ENST00000364837 108 ntBASIC0.64□□□□□ -2.31
CCDC3Q9BQI4 MIR573-201ENST00000384964 99 ntBASIC0.64□□□□□ -2.31
CCDC3Q9BQI4 MTATP6P21-201ENST00000440681 189 ntBASIC0.64□□□□□ -2.31
CCDC3Q9BQI4 RNU7-185P-201ENST00000459215 60 ntBASIC0.64□□□□□ -2.31
CCDC3Q9BQI4 COX6CP6-201ENST00000490840 228 ntBASIC0.64□□□□□ -2.31
CCDC3Q9BQI4 AC022559.1-201ENST00000520905 205 ntBASIC0.64□□□□□ -2.31
CCDC3Q9BQI4 SNORD92-201ENST00000585078 85 ntBASIC0.64□□□□□ -2.31
CCDC3Q9BQI4 MIR6844-201ENST00000637122 62 ntBASIC0.64□□□□□ -2.31
CCDC3Q9BQI4 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
CCDC3Q9BQI4 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
CCDC3Q9BQI4 SNORD115-2-201ENST00000362842 82 ntBASIC0.63□□□□□ -2.31
CCDC3Q9BQI4 RNU6-682P-201ENST00000363843 106 ntBASIC0.63□□□□□ -2.31
CCDC3Q9BQI4 SNORD115-20-201ENST00000365099 82 ntBASIC0.63□□□□□ -2.31
CCDC3Q9BQI4 RNU5E-9P-201ENST00000411164 104 ntBASIC0.63□□□□□ -2.31
CCDC3Q9BQI4 Y_RNA.662-201ENST00000516028 97 ntBASIC0.63□□□□□ -2.31
CCDC3Q9BQI4 SNORA81.3-201ENST00000517283 198 ntBASIC0.63□□□□□ -2.31
CCDC3Q9BQI4 DNAJC19P2-201ENST00000593340 302 ntBASIC0.63□□□□□ -2.31
CCDC3Q9BQI4 RNA5SP347-201ENST00000362445 119 ntBASIC0.62□□□□□ -2.31
CCDC3Q9BQI4 Y_RNA.497-201ENST00000384447 98 ntBASIC0.62□□□□□ -2.31
CCDC3Q9BQI4 MIR520F-201ENST00000384824 87 ntBASIC0.62□□□□□ -2.31
CCDC3Q9BQI4 MIR1257-201ENST00000408490 117 ntBASIC0.62□□□□□ -2.31
CCDC3Q9BQI4 RNU6-1086P-201ENST00000410930 100 ntBASIC0.62□□□□□ -2.31
CCDC3Q9BQI4 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.62□□□□□ -2.31
CCDC3Q9BQI4 AC004792.1-201ENST00000614523 137 ntBASIC0.62□□□□□ -2.31
CCDC3Q9BQI4 RNU6-447P-201ENST00000410293 104 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 RNU6-1118P-201ENST00000410382 104 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 RNU6-1076P-201ENST00000410397 104 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 RNU6-355P-201ENST00000410427 104 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 RNU6-791P-201ENST00000410467 104 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 RNU6-705P-201ENST00000410601 104 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 RNU6-1100P-201ENST00000410691 104 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 RNA5SP144-201ENST00000410846 116 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 RNU6-860P-201ENST00000410860 104 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 RNU6-1217P-201ENST00000411276 104 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 RNU6-785P-201ENST00000411324 104 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 Y_RNA.757-201ENST00000578934 114 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 AC090897.1-201ENST00000580909 226 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 U6.90-201ENST00000614007 104 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 U6.70-201ENST00000620287 104 ntBASIC0.61□□□□□ -2.31
CCDC3Q9BQI4 SNORD114-23-201ENST00000363536 72 ntBASIC0.6□□□□□ -2.31
CCDC3Q9BQI4 RNU6-1336P-201ENST00000383886 109 ntBASIC0.6□□□□□ -2.31
CCDC3Q9BQI4 MIR193B-201ENST00000384907 83 ntBASIC0.6□□□□□ -2.31
CCDC3Q9BQI4 MIR520H-201ENST00000385126 88 ntBASIC0.6□□□□□ -2.31
CCDC3Q9BQI4 Y_RNA.580-201ENST00000391004 95 ntBASIC0.6□□□□□ -2.31
CCDC3Q9BQI4 SNORD100-201ENST00000408573 76 ntBASIC0.6□□□□□ -2.31
CCDC3Q9BQI4 RNA5SP237-201ENST00000410414 113 ntBASIC0.6□□□□□ -2.31
CCDC3Q9BQI4 RNU6-861P-201ENST00000516745 106 ntBASIC0.6□□□□□ -2.31
CCDC3Q9BQI4 AC011195.1-201ENST00000578177 177 ntBASIC0.6□□□□□ -2.31
CCDC3Q9BQI4 Y_RNA.120-201ENST00000363304 110 ntBASIC0.59□□□□□ -2.31
CCDC3Q9BQI4 RNU6-949P-201ENST00000384040 107 ntBASIC0.59□□□□□ -2.31
CCDC3Q9BQI4 AC141846.1-201ENST00000568348 142 ntBASIC0.59□□□□□ -2.31
CCDC3Q9BQI4 MIR4711-201ENST00000578274 70 ntBASIC0.59□□□□□ -2.31
CCDC3Q9BQI4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.59□□□□□ -2.31
CCDC3Q9BQI4 Y_RNA.251-201ENST00000364551 99 ntBASIC0.58□□□□□ -2.32
CCDC3Q9BQI4 AL603914.1-201ENST00000401964 204 ntBASIC0.58□□□□□ -2.32
CCDC3Q9BQI4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.58□□□□□ -2.32
CCDC3Q9BQI4 RNU6-588P-201ENST00000410281 105 ntBASIC0.58□□□□□ -2.32
CCDC3Q9BQI4 RNA5SP193-201ENST00000410353 107 ntBASIC0.58□□□□□ -2.32
CCDC3Q9BQI4 RNU6-182P-201ENST00000516970 105 ntBASIC0.58□□□□□ -2.32
CCDC3Q9BQI4 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.58□□□□□ -2.32
CCDC3Q9BQI4 Y_RNA.272-201ENST00000364696 102 ntBASIC0.57□□□□□ -2.32
CCDC3Q9BQI4 RNU6-364P-201ENST00000384387 107 ntBASIC0.57□□□□□ -2.32
CCDC3Q9BQI4 AL022718.1-201ENST00000412004 84 ntBASIC0.57□□□□□ -2.32
CCDC3Q9BQI4 AC098934.3-201ENST00000430450 190 ntBASIC0.57□□□□□ -2.32
CCDC3Q9BQI4 RNU6-1258P-201ENST00000516911 111 ntBASIC0.57□□□□□ -2.32
CCDC3Q9BQI4 RNU6-765P-201ENST00000516916 99 ntBASIC0.57□□□□□ -2.32
CCDC3Q9BQI4 RNU7-156P-201ENST00000517214 74 ntBASIC0.57□□□□□ -2.32
CCDC3Q9BQI4 RNU2-60P-201ENST00000517290 128 ntBASIC0.57□□□□□ -2.32
CCDC3Q9BQI4 AP003327.1-201ENST00000529684 127 ntBASIC0.57□□□□□ -2.32
CCDC3Q9BQI4 AC018659.1-201ENST00000551083 169 ntBASIC0.57□□□□□ -2.32
CCDC3Q9BQI4 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.57□□□□□ -2.32
CCDC3Q9BQI4 AC243829.3-201ENST00000622177 108 ntBASIC0.57□□□□□ -2.32
CCDC3Q9BQI4 U8.15-201ENST00000390947 134 ntBASIC0.56□□□□□ -2.32
CCDC3Q9BQI4 Y_RNA.584-201ENST00000391090 114 ntBASIC0.56□□□□□ -2.32
CCDC3Q9BQI4 AC092628.1-201ENST00000436250 252 ntBASIC0.56□□□□□ -2.32
CCDC3Q9BQI4 RNU7-102P-201ENST00000458948 62 ntBASIC0.56□□□□□ -2.32
CCDC3Q9BQI4 RNU7-35P-201ENST00000517174 62 ntBASIC0.56□□□□□ -2.32
CCDC3Q9BQI4 RNU6-794P-201ENST00000517261 64 ntBASIC0.56□□□□□ -2.32
CCDC3Q9BQI4 MIR1273G-201ENST00000577677 100 ntBASIC0.56□□□□□ -2.32
CCDC3Q9BQI4 MIR8066-201ENST00000617280 78 ntBASIC0.56□□□□□ -2.32
CCDC3Q9BQI4 uc_338.17-201ENST00000619633 179 ntBASIC0.56□□□□□ -2.32
CCDC3Q9BQI4 AC010487.4-201ENST00000637027 61 ntBASIC0.56□□□□□ -2.32
CCDC3Q9BQI4 MIR18A-201ENST00000362310 71 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 Y_RNA.42-201ENST00000362660 108 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 RNA5SP499-201ENST00000363982 119 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 SNORD18B-201ENST00000365659 72 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 SNORA18-201ENST00000384416 132 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 MIR92A1-201ENST00000385233 78 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 SNORD93-201ENST00000408813 74 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 RNU6-394P-201ENST00000410735 107 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 AC096949.1-201ENST00000412047 152 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 AC015818.7-201ENST00000428754 109 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 AC087499.7-201ENST00000441958 109 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 AC002350.1-201ENST00000490759 375 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 RNU6-229P-201ENST00000516614 102 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 MIR3612-201ENST00000579753 87 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 MIR4305-201ENST00000583252 102 ntBASIC0.55□□□□□ -2.32
CCDC3Q9BQI4 RNU4-16P-201ENST00000364737 141 ntBASIC0.54□□□□□ -2.32
CCDC3Q9BQI4 RNY1P13-201ENST00000365030 105 ntBASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 198.6 ms