| HOOK2 | Q96ED9 | AC010332.2-201 | ENST00000613083 | 1904 nt | BASIC | 1.16 | □□□□□ -2.22 | | |
| HOOK2 | Q96ED9 | MIR373-201 | ENST00000362273 | 69 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | Y_RNA.170-201 | ENST00000363746 | 110 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU6-309P-201 | ENST00000364573 | 106 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU6-915P-201 | ENST00000364943 | 103 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | SNORD89-201 | ENST00000390981 | 114 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU6-460P-201 | ENST00000391158 | 108 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU7-113P-201 | ENST00000459273 | 62 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AC113410.1-201 | ENST00000505029 | 247 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU6-240P-201 | ENST00000516098 | 97 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU7-200P-201 | ENST00000516105 | 62 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AP001328.1-201 | ENST00000528550 | 176 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AC032019.2-201 | ENST00000584916 | 403 nt | TSL 5 BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AC021443.1-201 | ENST00000604478 | 211 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AL662814.1-201 | ENST00000617364 | 121 nt | BASIC | 1.15 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | CCDC68-202 | ENST00000432185 | 4014 nt | APPRIS P1 TSL 1 (best) BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNY1P5-201 | ENST00000383890 | 115 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | SNORD83.1-201 | ENST00000411362 | 77 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | Y_RNA.651-201 | ENST00000459380 | 103 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | MIR4771-2-201 | ENST00000577758 | 74 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | MIR4771-1-201 | ENST00000582617 | 74 nt | BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | C9orf84-205 | ENST00000394779 | 5060 nt | APPRIS ALT2 TSL 2 BASIC | 1.14 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | MIR30D-201 | ENST00000362283 | 70 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | SNORD115-2-201 | ENST00000362842 | 82 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | SNORD115-20-201 | ENST00000365099 | 82 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | MIR569-201 | ENST00000385228 | 96 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RPL39P25-201 | ENST00000449384 | 154 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | CYP3A137P-201 | ENST00000562436 | 69 nt | BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AC108866.1-201 | ENST00000503073 | 2339 nt | TSL 5 BASIC | 1.13 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU1-36P-201 | ENST00000365130 | 165 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AL138808.1-201 | ENST00000441428 | 371 nt | TSL 2 BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | snoU13.21-201 | ENST00000459368 | 105 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU6-977P-201 | ENST00000516411 | 103 nt | BASIC | 1.12 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | Y_RNA.36-201 | ENST00000362602 | 112 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | Y_RNA.171-201 | ENST00000363760 | 102 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | Y_RNA.343-201 | ENST00000365354 | 112 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | Y_RNA.420-201 | ENST00000384043 | 110 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | SNORA18-201 | ENST00000384416 | 132 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU6-1237P-201 | ENST00000384777 | 107 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | MIR1257-201 | ENST00000408490 | 117 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU6-1086P-201 | ENST00000410930 | 100 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU7-164P-201 | ENST00000459221 | 62 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AC092892.1-201 | ENST00000496067 | 327 nt | TSL 5 BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | IGHVII-40-1-201 | ENST00000517316 | 58 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | MIR3121-201 | ENST00000579680 | 77 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | uc_338.6-201 | ENST00000613544 | 171 nt | BASIC | 1.11 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | C9orf84-204 | ENST00000394777 | 4955 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.1 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AC023934.1-201 | ENST00000574529 | 2389 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | Y_RNA.531-201 | ENST00000384589 | 121 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | SNORD105-201 | ENST00000386910 | 85 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AC012668.1-201 | ENST00000457625 | 228 nt | TSL 3 BASIC | 1.1 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU5E-3P-201 | ENST00000515913 | 68 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU6-255P-201 | ENST00000516957 | 105 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AC141846.1-201 | ENST00000568348 | 142 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | MIR3973-201 | ENST00000579824 | 107 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | U7.2-201 | ENST00000607576 | 63 nt | BASIC | 1.1 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | TRAJ22-201 | ENST00000390515 | 63 nt | APPRIS P1 BASIC | 1.09 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU7-185P-201 | ENST00000459215 | 60 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNA5SP33-201 | ENST00000516687 | 98 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | RNU6-1258P-201 | ENST00000516911 | 111 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AC004812.1-201 | ENST00000540773 | 146 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | MIR4676-201 | ENST00000583078 | 72 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | AL137067.1-201 | ENST00000615933 | 120 nt | BASIC | 1.09 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | IST1-227 | ENST00000626438 | 126 nt | TSL 5 BASIC | 1.09 | □□□□□ -2.23 | | |
| HOOK2 | Q96ED9 | OMD-201 | ENST00000375550 | 2449 nt | APPRIS P1 TSL 1 (best) BASIC | 1.08 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | RNU6-369P-201 | ENST00000362515 | 102 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | Y_RNA.299-201 | ENST00000364973 | 94 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | MIR938-201 | ENST00000401216 | 83 nt | BASIC | 1.08 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | RNU6-508P-201 | ENST00000363231 | 103 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | RNU6-647P-201 | ENST00000364243 | 107 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | Y_RNA.298-201 | ENST00000364960 | 107 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | Y_RNA.366-201 | ENST00000365540 | 102 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | MIR125B2-201 | ENST00000385128 | 89 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | RNU6ATAC42P-201 | ENST00000408637 | 95 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | RNU2-35P-201 | ENST00000516446 | 142 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | MIR4804-201 | ENST00000581683 | 73 nt | BASIC | 1.07 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | IL6ST-202 | ENST00000381286 | 201 nt | TSL 1 (best) BASIC | 1.06 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | RNU6-949P-201 | ENST00000384040 | 107 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | MIR608-201 | ENST00000384820 | 100 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | MIR520F-201 | ENST00000384824 | 87 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | AL512326.2-201 | ENST00000426359 | 151 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | RNU6-426P-201 | ENST00000516464 | 97 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | RNU7-35P-201 | ENST00000517174 | 62 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | MIR4698-201 | ENST00000577795 | 80 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | AL353765.1-201 | ENST00000605514 | 183 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | AC020891.4-201 | ENST00000605745 | 93 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | TUG1_4.1-201 | ENST00000619464 | 181 nt | BASIC | 1.06 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | LEKR1-212 | ENST00000640869 | 237 nt | TSL 5 BASIC | 1.06 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | RNU6-1187P-201 | ENST00000364771 | 110 nt | BASIC | 1.05 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | Y_RNA.470-201 | ENST00000384307 | 117 nt | BASIC | 1.05 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | MT-TR-201 | ENST00000387439 | 65 nt | BASIC | 1.05 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | AC004941.2-201 | ENST00000427009 | 228 nt | BASIC | 1.05 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | RNU7-123P-201 | ENST00000515911 | 60 nt | BASIC | 1.05 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | 5S_rRNA.15-201 | ENST00000611169 | 127 nt | BASIC | 1.05 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | RNU6-364P-201 | ENST00000384387 | 107 nt | BASIC | 1.04 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | Y_RNA.506-201 | ENST00000384494 | 102 nt | BASIC | 1.04 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | SNORD93-201 | ENST00000408813 | 74 nt | BASIC | 1.04 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | RNU7-79P-201 | ENST00000516082 | 62 nt | BASIC | 1.04 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | FAM19A1-204 | ENST00000617084 | 159 nt | TSL 5 BASIC | 1.04 | □□□□□ -2.24 | | |
| HOOK2 | Q96ED9 | CCDC73-201 | ENST00000335185 | 3849 nt | APPRIS P2 TSL 2 BASIC | 1.03 | □□□□□ -2.24 | | |