Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AC108667.1-201ENST00000428618 249 ntBASIC1.64□□□□□ -2.15
ERCC4Q92889 RPS29P23-201ENST00000458635 123 ntBASIC1.64□□□□□ -2.15
ERCC4Q92889 RNU6-1053P-201ENST00000515930 101 ntBASIC1.64□□□□□ -2.15
ERCC4Q92889 MIR2115-201ENST00000516657 100 ntBASIC1.64□□□□□ -2.15
ERCC4Q92889 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.64□□□□□ -2.15
ERCC4Q92889 MIR5009-201ENST00000578736 100 ntBASIC1.64□□□□□ -2.15
ERCC4Q92889 MIR6516-201ENST00000630554 81 ntBASIC1.64□□□□□ -2.15
ERCC4Q92889 MIR377-201ENST00000362145 69 ntBASIC1.63□□□□□ -2.15
ERCC4Q92889 RNU6-363P-201ENST00000362895 105 ntBASIC1.63□□□□□ -2.15
ERCC4Q92889 Y_RNA.309-201ENST00000365046 111 ntBASIC1.63□□□□□ -2.15
ERCC4Q92889 RNU6-613P-201ENST00000410412 108 ntBASIC1.63□□□□□ -2.15
ERCC4Q92889 RNU6-554P-201ENST00000410466 106 ntBASIC1.63□□□□□ -2.15
ERCC4Q92889 snoU13.2-201ENST00000459201 104 ntBASIC1.63□□□□□ -2.15
ERCC4Q92889 SNORD53B-201ENST00000577887 78 ntBASIC1.63□□□□□ -2.15
ERCC4Q92889 MIR4264-201ENST00000583520 66 ntBASIC1.63□□□□□ -2.15
ERCC4Q92889 MIR7974-201ENST00000615835 79 ntBASIC1.63□□□□□ -2.15
ERCC4Q92889 MIR1255B1-201ENST00000636325 63 ntBASIC1.63□□□□□ -2.15
ERCC4Q92889 MIR103A2-201ENST00000362154 78 ntBASIC1.62□□□□□ -2.15
ERCC4Q92889 SNORA32-201ENST00000384072 121 ntBASIC1.62□□□□□ -2.15
ERCC4Q92889 SNORD77B-201ENST00000391112 67 ntBASIC1.62□□□□□ -2.15
ERCC4Q92889 MIR1912-201ENST00000410389 80 ntBASIC1.62□□□□□ -2.15
ERCC4Q92889 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.62□□□□□ -2.15
ERCC4Q92889 uc_338.28-201ENST00000612082 187 ntBASIC1.62□□□□□ -2.15
ERCC4Q92889 RNU6-580P-201ENST00000365159 107 ntBASIC1.61□□□□□ -2.15
ERCC4Q92889 RNU6-147P-201ENST00000383983 107 ntBASIC1.61□□□□□ -2.15
ERCC4Q92889 RNU6-616P-201ENST00000384353 107 ntBASIC1.61□□□□□ -2.15
ERCC4Q92889 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.61□□□□□ -2.15
ERCC4Q92889 MIR4498-201ENST00000577599 66 ntBASIC1.61□□□□□ -2.15
ERCC4Q92889 AL662814.1-201ENST00000617364 121 ntBASIC1.61□□□□□ -2.15
ERCC4Q92889 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
ERCC4Q92889 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
ERCC4Q92889 MIR378A-201ENST00000362177 66 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 Y_RNA.163-201ENST00000363702 113 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 RNU6-60P-201ENST00000364792 103 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 MIR517C-201ENST00000385103 95 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 RNU6-816P-201ENST00000390914 107 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 RNU6-1268P-201ENST00000391214 107 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 RNU6-1239P-201ENST00000391310 107 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 AL353813.1-201ENST00000440700 253 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 AC048334.1-201ENST00000477975 159 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 RNU7-79P-201ENST00000516082 62 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 RN7SKP88-201ENST00000516847 250 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 MIR4303-201ENST00000581299 66 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 7SK.8-201ENST00000612110 250 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 7SK.11-201ENST00000615477 250 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 MIR6740-201ENST00000618268 113 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 7SK.13-201ENST00000622040 250 ntBASIC1.6□□□□□ -2.15
ERCC4Q92889 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
ERCC4Q92889 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.59□□□□□ -2.15
ERCC4Q92889 RNU6-654P-201ENST00000364373 107 ntBASIC1.59□□□□□ -2.15
ERCC4Q92889 RNU4-67P-201ENST00000364569 141 ntBASIC1.59□□□□□ -2.15
ERCC4Q92889 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.59□□□□□ -2.15
ERCC4Q92889 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.59□□□□□ -2.15
ERCC4Q92889 FAM71BP1-201ENST00000604431 523 ntBASIC1.59□□□□□ -2.15
ERCC4Q92889 snoU13.31-201ENST00000607291 104 ntBASIC1.59□□□□□ -2.15
ERCC4Q92889 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
ERCC4Q92889 Y_RNA.4-201ENST00000362333 112 ntBASIC1.58□□□□□ -2.16
ERCC4Q92889 Y_RNA.164-201ENST00000363709 102 ntBASIC1.58□□□□□ -2.16
ERCC4Q92889 RNY1P13-201ENST00000365030 105 ntBASIC1.58□□□□□ -2.16
ERCC4Q92889 Y_RNA.363-201ENST00000365529 113 ntBASIC1.58□□□□□ -2.16
ERCC4Q92889 MIR588-201ENST00000384900 83 ntBASIC1.58□□□□□ -2.16
ERCC4Q92889 SNORA67.6-201ENST00000391093 99 ntBASIC1.58□□□□□ -2.16
ERCC4Q92889 AC141846.1-201ENST00000568348 142 ntBASIC1.58□□□□□ -2.16
ERCC4Q92889 MIR3613-201ENST00000579844 87 ntBASIC1.58□□□□□ -2.16
ERCC4Q92889 AP000753.3-201ENST00000604083 169 ntBASIC1.58□□□□□ -2.16
ERCC4Q92889 SEPT14P17-201ENST00000617978 177 ntBASIC1.58□□□□□ -2.16
ERCC4Q92889 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.58□□□□□ -2.16
ERCC4Q92889 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
ERCC4Q92889 Y_RNA.78-201ENST00000362970 110 ntBASIC1.57□□□□□ -2.16
ERCC4Q92889 SNORD115-35-201ENST00000365122 82 ntBASIC1.57□□□□□ -2.16
ERCC4Q92889 Y_RNA.328-201ENST00000365208 113 ntBASIC1.57□□□□□ -2.16
ERCC4Q92889 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.57□□□□□ -2.16
ERCC4Q92889 RNU4-62P-201ENST00000410125 130 ntBASIC1.57□□□□□ -2.16
ERCC4Q92889 AL031737.1-201ENST00000450125 223 ntBASIC1.57□□□□□ -2.16
ERCC4Q92889 RNU7-137P-201ENST00000516788 62 ntBASIC1.57□□□□□ -2.16
ERCC4Q92889 AC068338.1-201ENST00000565567 176 ntBASIC1.57□□□□□ -2.16
ERCC4Q92889 MIR30D-201ENST00000362283 70 ntBASIC1.56□□□□□ -2.16
ERCC4Q92889 RNU6-766P-201ENST00000362478 107 ntBASIC1.56□□□□□ -2.16
ERCC4Q92889 SNORD114-10-201ENST00000363409 72 ntBASIC1.56□□□□□ -2.16
ERCC4Q92889 Y_RNA.507-201ENST00000384500 99 ntBASIC1.56□□□□□ -2.16
ERCC4Q92889 RNU6-679P-201ENST00000391003 106 ntBASIC1.56□□□□□ -2.16
ERCC4Q92889 MIR1302-5-201ENST00000408164 150 ntBASIC1.56□□□□□ -2.16
ERCC4Q92889 RPL39P25-201ENST00000449384 154 ntBASIC1.56□□□□□ -2.16
ERCC4Q92889 SNORA31.2-201ENST00000516019 134 ntBASIC1.56□□□□□ -2.16
ERCC4Q92889 RNU6-1018P-201ENST00000516577 106 ntBASIC1.56□□□□□ -2.16
ERCC4Q92889 SNORD67.1-201ENST00000516618 108 ntBASIC1.56□□□□□ -2.16
ERCC4Q92889 RNU6-537P-201ENST00000517277 103 ntBASIC1.56□□□□□ -2.16
ERCC4Q92889 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
ERCC4Q92889 RNY1P10-201ENST00000363268 113 ntBASIC1.55□□□□□ -2.16
ERCC4Q92889 Y_RNA.168-201ENST00000363740 102 ntBASIC1.55□□□□□ -2.16
ERCC4Q92889 RNU6-949P-201ENST00000384040 107 ntBASIC1.55□□□□□ -2.16
ERCC4Q92889 MIR206-201ENST00000384872 86 ntBASIC1.55□□□□□ -2.16
ERCC4Q92889 SNORA75.2-201ENST00000391138 150 ntBASIC1.55□□□□□ -2.16
ERCC4Q92889 SNORA75.3-201ENST00000391231 150 ntBASIC1.55□□□□□ -2.16
ERCC4Q92889 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.55□□□□□ -2.16
ERCC4Q92889 RNU7-2P-201ENST00000516096 62 ntBASIC1.55□□□□□ -2.16
ERCC4Q92889 SNORA31.24-201ENST00000517232 57 ntBASIC1.55□□□□□ -2.16
ERCC4Q92889 AL512598.1-201ENST00000610158 273 ntBASIC1.55□□□□□ -2.16
ERCC4Q92889 uc_338.6-201ENST00000613544 171 ntBASIC1.55□□□□□ -2.16
ERCC4Q92889 MIR450A1-201ENST00000362262 91 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 222.6 ms