Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SNORD12C-201ENST00000386307 89 ntBASIC0.86□□□□□ -2.27
COL28A1Q2UY09 Y_RNA.580-201ENST00000391004 95 ntBASIC0.86□□□□□ -2.27
COL28A1Q2UY09 AC098934.3-201ENST00000430450 190 ntBASIC0.86□□□□□ -2.27
COL28A1Q2UY09 snoU13.21-201ENST00000459368 105 ntBASIC0.86□□□□□ -2.27
COL28A1Q2UY09 RPL39P28-201ENST00000465655 155 ntBASIC0.86□□□□□ -2.27
COL28A1Q2UY09 MIR3671-201ENST00000580455 88 ntBASIC0.86□□□□□ -2.27
COL28A1Q2UY09 AL589743.1-201ENST00000551932 2712 ntBASIC0.85□□□□□ -2.27
COL28A1Q2UY09 MIR608-201ENST00000384820 100 ntBASIC0.85□□□□□ -2.27
COL28A1Q2UY09 RNU6-588P-201ENST00000410281 105 ntBASIC0.85□□□□□ -2.27
COL28A1Q2UY09 AL353765.1-201ENST00000605514 183 ntBASIC0.85□□□□□ -2.27
COL28A1Q2UY09 AC098479.1-201ENST00000609225 154 ntBASIC0.85□□□□□ -2.27
COL28A1Q2UY09 AC090425.1-201ENST00000610007 140 ntBASIC0.85□□□□□ -2.27
COL28A1Q2UY09 MIR3658-201ENST00000636291 56 ntBASIC0.85□□□□□ -2.27
COL28A1Q2UY09 MIR100-201ENST00000385259 80 ntBASIC0.84□□□□□ -2.27
COL28A1Q2UY09 SNORD37.2-201ENST00000391075 66 ntBASIC0.84□□□□□ -2.27
COL28A1Q2UY09 RNU6-394P-201ENST00000410735 107 ntBASIC0.84□□□□□ -2.27
COL28A1Q2UY09 SNORD83.1-201ENST00000411362 77 ntBASIC0.84□□□□□ -2.27
COL28A1Q2UY09 AC108059.2-201ENST00000434626 151 ntBASIC0.84□□□□□ -2.27
COL28A1Q2UY09 AC074198.2-201ENST00000508153 258 ntBASIC0.84□□□□□ -2.27
COL28A1Q2UY09 uc_338.6-201ENST00000613544 171 ntBASIC0.84□□□□□ -2.27
COL28A1Q2UY09 AC010332.2-201ENST00000613083 1904 ntBASIC0.83□□□□□ -2.28
COL28A1Q2UY09 MIR30D-201ENST00000362283 70 ntBASIC0.83□□□□□ -2.28
COL28A1Q2UY09 Y_RNA.120-201ENST00000363304 110 ntBASIC0.83□□□□□ -2.28
COL28A1Q2UY09 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
COL28A1Q2UY09 SNORD105-201ENST00000386910 85 ntBASIC0.83□□□□□ -2.28
COL28A1Q2UY09 PCNPP3-201ENST00000393579 471 ntBASIC0.83□□□□□ -2.28
COL28A1Q2UY09 AC004941.2-201ENST00000427009 228 ntBASIC0.83□□□□□ -2.28
COL28A1Q2UY09 RNU2-60P-201ENST00000517290 128 ntBASIC0.83□□□□□ -2.28
COL28A1Q2UY09 MIR4771-2-201ENST00000577758 74 ntBASIC0.83□□□□□ -2.28
COL28A1Q2UY09 MIR4771-1-201ENST00000582617 74 ntBASIC0.83□□□□□ -2.28
COL28A1Q2UY09 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.83□□□□□ -2.28
COL28A1Q2UY09 AL662814.1-201ENST00000617364 121 ntBASIC0.83□□□□□ -2.28
COL28A1Q2UY09 RNU6-1335P-201ENST00000365426 107 ntBASIC0.82□□□□□ -2.28
COL28A1Q2UY09 RNU6-886P-201ENST00000384319 105 ntBASIC0.82□□□□□ -2.28
COL28A1Q2UY09 Y_RNA.584-201ENST00000391090 114 ntBASIC0.82□□□□□ -2.28
COL28A1Q2UY09 RNA5SP193-201ENST00000410353 107 ntBASIC0.82□□□□□ -2.28
COL28A1Q2UY09 RNA5SP144-201ENST00000410846 116 ntBASIC0.82□□□□□ -2.28
COL28A1Q2UY09 AC112693.2-201ENST00000556538 232 ntBASIC0.82□□□□□ -2.28
COL28A1Q2UY09 Y_RNA.757-201ENST00000578934 114 ntBASIC0.82□□□□□ -2.28
COL28A1Q2UY09 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
COL28A1Q2UY09 Y_RNA.270-201ENST00000364693 104 ntBASIC0.81□□□□□ -2.28
COL28A1Q2UY09 Y_RNA.280-201ENST00000364765 112 ntBASIC0.81□□□□□ -2.28
COL28A1Q2UY09 RNU6-449P-201ENST00000383914 107 ntBASIC0.81□□□□□ -2.28
COL28A1Q2UY09 Y_RNA.555-201ENST00000384673 110 ntBASIC0.81□□□□□ -2.28
COL28A1Q2UY09 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.81□□□□□ -2.28
COL28A1Q2UY09 ACA64.5-201ENST00000516207 127 ntBASIC0.81□□□□□ -2.28
COL28A1Q2UY09 MIR4711-201ENST00000578274 70 ntBASIC0.81□□□□□ -2.28
COL28A1Q2UY09 MIR4676-201ENST00000583078 72 ntBASIC0.81□□□□□ -2.28
COL28A1Q2UY09 Y_RNA.778-201ENST00000620203 90 ntBASIC0.81□□□□□ -2.28
COL28A1Q2UY09 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.8□□□□□ -2.28
COL28A1Q2UY09 RNU4-16P-201ENST00000364737 141 ntBASIC0.8□□□□□ -2.28
COL28A1Q2UY09 SNORD18B-201ENST00000365659 72 ntBASIC0.8□□□□□ -2.28
COL28A1Q2UY09 MIR508-201ENST00000384857 115 ntBASIC0.8□□□□□ -2.28
COL28A1Q2UY09 AL603914.1-201ENST00000401964 204 ntBASIC0.8□□□□□ -2.28
COL28A1Q2UY09 RNA5SP237-201ENST00000410414 113 ntBASIC0.8□□□□□ -2.28
COL28A1Q2UY09 RNU7-185P-201ENST00000459215 60 ntBASIC0.8□□□□□ -2.28
COL28A1Q2UY09 RNU6-977P-201ENST00000516411 103 ntBASIC0.8□□□□□ -2.28
COL28A1Q2UY09 MIR4804-201ENST00000581683 73 ntBASIC0.8□□□□□ -2.28
COL28A1Q2UY09 AC096720.1-201ENST00000604441 183 ntBASIC0.8□□□□□ -2.28
COL28A1Q2UY09 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.8□□□□□ -2.28
COL28A1Q2UY09 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
COL28A1Q2UY09 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
COL28A1Q2UY09 SNORD115-2-201ENST00000362842 82 ntBASIC0.79□□□□□ -2.28
COL28A1Q2UY09 SNORD115-20-201ENST00000365099 82 ntBASIC0.79□□□□□ -2.28
COL28A1Q2UY09 MIR125B2-201ENST00000385128 89 ntBASIC0.79□□□□□ -2.28
COL28A1Q2UY09 MIR146A-201ENST00000385201 99 ntBASIC0.79□□□□□ -2.28
COL28A1Q2UY09 SNORD99-201ENST00000408612 74 ntBASIC0.79□□□□□ -2.28
COL28A1Q2UY09 AC013244.2-201ENST00000603396 103 ntBASIC0.79□□□□□ -2.28
COL28A1Q2UY09 AC020891.4-201ENST00000605745 93 ntBASIC0.79□□□□□ -2.28
COL28A1Q2UY09 MIR2909-201ENST00000617113 69 ntBASIC0.79□□□□□ -2.28
COL28A1Q2UY09 MIR6835-201ENST00000621552 64 ntBASIC0.79□□□□□ -2.28
COL28A1Q2UY09 RNU6-690P-201ENST00000365242 106 ntBASIC0.78□□□□□ -2.28
COL28A1Q2UY09 RNU6-110P-201ENST00000384508 104 ntBASIC0.78□□□□□ -2.28
COL28A1Q2UY09 MIR938-201ENST00000401216 83 ntBASIC0.78□□□□□ -2.28
COL28A1Q2UY09 MIR1257-201ENST00000408490 117 ntBASIC0.78□□□□□ -2.28
COL28A1Q2UY09 RNU6-1086P-201ENST00000410930 100 ntBASIC0.78□□□□□ -2.28
COL28A1Q2UY09 AL022718.1-201ENST00000412004 84 ntBASIC0.78□□□□□ -2.28
COL28A1Q2UY09 RNU7-197P-201ENST00000458836 62 ntBASIC0.78□□□□□ -2.28
COL28A1Q2UY09 AC141846.1-201ENST00000568348 142 ntBASIC0.78□□□□□ -2.28
COL28A1Q2UY09 MIR4653-201ENST00000585107 83 ntBASIC0.78□□□□□ -2.28
COL28A1Q2UY09 FAM71BP1-201ENST00000604431 523 ntBASIC0.78□□□□□ -2.28
COL28A1Q2UY09 AC023934.1-201ENST00000574529 2389 ntBASIC0.78□□□□□ -2.28
COL28A1Q2UY09 RNU4-11P-201ENST00000365287 132 ntBASIC0.77□□□□□ -2.29
COL28A1Q2UY09 MIR520F-201ENST00000384824 87 ntBASIC0.77□□□□□ -2.29
COL28A1Q2UY09 AC244098.3-201ENST00000424803 96 ntBASIC0.77□□□□□ -2.29
COL28A1Q2UY09 RNU7-56P-201ENST00000458744 62 ntBASIC0.77□□□□□ -2.29
COL28A1Q2UY09 Y_RNA.651-201ENST00000459380 103 ntBASIC0.77□□□□□ -2.29
COL28A1Q2UY09 RNU6-1258P-201ENST00000516911 111 ntBASIC0.77□□□□□ -2.29
COL28A1Q2UY09 MIR3144-201ENST00000579460 79 ntBASIC0.77□□□□□ -2.29
COL28A1Q2UY09 MIR4305-201ENST00000583252 102 ntBASIC0.77□□□□□ -2.29
COL28A1Q2UY09 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.77□□□□□ -2.29
COL28A1Q2UY09 Y_RNA.150-201ENST00000363562 102 ntBASIC0.76□□□□□ -2.29
COL28A1Q2UY09 RNY1P11-201ENST00000363759 113 ntBASIC0.76□□□□□ -2.29
COL28A1Q2UY09 Y_RNA.180-201ENST00000363867 113 ntBASIC0.76□□□□□ -2.29
COL28A1Q2UY09 RNU6-151P-201ENST00000364158 107 ntBASIC0.76□□□□□ -2.29
COL28A1Q2UY09 RNU6-1130P-201ENST00000365434 107 ntBASIC0.76□□□□□ -2.29
COL28A1Q2UY09 MIR573-201ENST00000384964 99 ntBASIC0.76□□□□□ -2.29
COL28A1Q2UY09 RNU1-119P-201ENST00000391122 165 ntBASIC0.76□□□□□ -2.29
COL28A1Q2UY09 PSMC1P5-201ENST00000512850 177 ntBASIC0.76□□□□□ -2.29
COL28A1Q2UY09 SNORD92-201ENST00000585078 85 ntBASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 315.4 ms