Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 SNORA40-201ENST00000388090 126 ntBASIC1.4□□□□□ -2.19
SF3A1Q15459 RPS26P5-201ENST00000418544 335 ntBASIC1.4□□□□□ -2.19
SF3A1Q15459 AL512326.2-201ENST00000426359 151 ntBASIC1.4□□□□□ -2.19
SF3A1Q15459 RN7SKP179-201ENST00000516126 217 ntBASIC1.4□□□□□ -2.19
SF3A1Q15459 AC004812.1-201ENST00000540773 146 ntBASIC1.4□□□□□ -2.19
SF3A1Q15459 RNU6-42P-201ENST00000384165 107 ntBASIC1.39□□□□□ -2.19
SF3A1Q15459 Y_RNA.466-201ENST00000384294 113 ntBASIC1.39□□□□□ -2.19
SF3A1Q15459 Y_RNA.470-201ENST00000384307 117 ntBASIC1.39□□□□□ -2.19
SF3A1Q15459 MIR1257-201ENST00000408490 117 ntBASIC1.39□□□□□ -2.19
SF3A1Q15459 MIR1827-201ENST00000408549 66 ntBASIC1.39□□□□□ -2.19
SF3A1Q15459 RNU6-977P-201ENST00000516411 103 ntBASIC1.39□□□□□ -2.19
SF3A1Q15459 MIR4661-201ENST00000582720 75 ntBASIC1.39□□□□□ -2.19
SF3A1Q15459 TUG1_4.1-201ENST00000619464 181 ntBASIC1.39□□□□□ -2.19
SF3A1Q15459 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.38□□□□□ -2.19
SF3A1Q15459 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
SF3A1Q15459 RNU6-647P-201ENST00000364243 107 ntBASIC1.38□□□□□ -2.19
SF3A1Q15459 Y_RNA.298-201ENST00000364960 107 ntBASIC1.38□□□□□ -2.19
SF3A1Q15459 RNU6-53P-201ENST00000365367 106 ntBASIC1.38□□□□□ -2.19
SF3A1Q15459 SNORA32-201ENST00000384072 121 ntBASIC1.38□□□□□ -2.19
SF3A1Q15459 Y_RNA.531-201ENST00000384589 121 ntBASIC1.38□□□□□ -2.19
SF3A1Q15459 U7.7-201ENST00000459276 60 ntBASIC1.38□□□□□ -2.19
SF3A1Q15459 RNA5SP220-201ENST00000516298 104 ntBASIC1.38□□□□□ -2.19
SF3A1Q15459 RNY4P20-201ENST00000516678 93 ntBASIC1.38□□□□□ -2.19
SF3A1Q15459 AC141846.1-201ENST00000568348 142 ntBASIC1.38□□□□□ -2.19
SF3A1Q15459 MIR30D-201ENST00000362283 70 ntBASIC1.37□□□□□ -2.19
SF3A1Q15459 MTND4LP9-201ENST00000427694 174 ntBASIC1.37□□□□□ -2.19
SF3A1Q15459 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.37□□□□□ -2.19
SF3A1Q15459 UBL5P1-201ENST00000507979 193 ntBASIC1.37□□□□□ -2.19
SF3A1Q15459 RNA5SP255-201ENST00000516370 107 ntBASIC1.37□□□□□ -2.19
SF3A1Q15459 RNU6-1110P-201ENST00000516462 101 ntBASIC1.37□□□□□ -2.19
SF3A1Q15459 MIR6734-201ENST00000621166 68 ntBASIC1.37□□□□□ -2.19
SF3A1Q15459 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.36□□□□□ -2.19
SF3A1Q15459 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.36□□□□□ -2.19
SF3A1Q15459 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.36□□□□□ -2.19
SF3A1Q15459 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.36□□□□□ -2.19
SF3A1Q15459 AL391516.1-201ENST00000554380 2449 ntBASIC1.35□□□□□ -2.19
SF3A1Q15459 SNORD114-22-201ENST00000365423 72 ntBASIC1.35□□□□□ -2.19
SF3A1Q15459 MIR520F-201ENST00000384824 87 ntBASIC1.35□□□□□ -2.19
SF3A1Q15459 RNU6-257P-201ENST00000410238 98 ntBASIC1.35□□□□□ -2.19
SF3A1Q15459 RNU6-1086P-201ENST00000410930 100 ntBASIC1.35□□□□□ -2.19
SF3A1Q15459 RNU7-185P-201ENST00000459215 60 ntBASIC1.35□□□□□ -2.19
SF3A1Q15459 MIR4676-201ENST00000583078 72 ntBASIC1.35□□□□□ -2.19
SF3A1Q15459 MIR548AE2-201ENST00000583456 67 ntBASIC1.35□□□□□ -2.19
SF3A1Q15459 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.34□□□□□ -2.19
SF3A1Q15459 AL603908.1-201ENST00000406098 201 ntBASIC1.34□□□□□ -2.19
SF3A1Q15459 SNORD93-201ENST00000408813 74 ntBASIC1.34□□□□□ -2.19
SF3A1Q15459 SUMO1P3-201ENST00000439961 304 ntBASIC1.34□□□□□ -2.19
SF3A1Q15459 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.34□□□□□ -2.19
SF3A1Q15459 AC020891.4-201ENST00000605745 93 ntBASIC1.34□□□□□ -2.19
SF3A1Q15459 SNORD115-2-201ENST00000362842 82 ntBASIC1.33□□□□□ -2.2
SF3A1Q15459 SNORD115-20-201ENST00000365099 82 ntBASIC1.33□□□□□ -2.2
SF3A1Q15459 RNU6-1335P-201ENST00000365426 107 ntBASIC1.33□□□□□ -2.2
SF3A1Q15459 SNORD50.2-201ENST00000365465 70 ntBASIC1.33□□□□□ -2.2
SF3A1Q15459 MIR613-201ENST00000385248 95 ntBASIC1.33□□□□□ -2.2
SF3A1Q15459 AC025627.3-201ENST00000582078 182 ntBASIC1.33□□□□□ -2.2
SF3A1Q15459 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.33□□□□□ -2.2
SF3A1Q15459 MIR1285-1-201ENST00000408593 84 ntBASIC1.32□□□□□ -2.2
SF3A1Q15459 RNU6-1211P-201ENST00000459179 105 ntBASIC1.32□□□□□ -2.2
SF3A1Q15459 RN7SKP19-201ENST00000516016 252 ntBASIC1.32□□□□□ -2.2
SF3A1Q15459 AL589743.1-201ENST00000551932 2712 ntBASIC1.31□□□□□ -2.2
SF3A1Q15459 RNU6-235P-201ENST00000362644 107 ntBASIC1.31□□□□□ -2.2
SF3A1Q15459 RNU6-187P-201ENST00000384139 106 ntBASIC1.31□□□□□ -2.2
SF3A1Q15459 RNU6-364P-201ENST00000384387 107 ntBASIC1.31□□□□□ -2.2
SF3A1Q15459 AL158147.1-201ENST00000443970 75 ntBASIC1.31□□□□□ -2.2
SF3A1Q15459 RNU7-79P-201ENST00000516082 62 ntBASIC1.31□□□□□ -2.2
SF3A1Q15459 AC022523.2-201ENST00000561045 150 ntBASIC1.31□□□□□ -2.2
SF3A1Q15459 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.31□□□□□ -2.2
SF3A1Q15459 RMST_2.1-201ENST00000617263 136 ntBASIC1.31□□□□□ -2.2
SF3A1Q15459 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
SF3A1Q15459 RNU6-369P-201ENST00000362515 102 ntBASIC1.3□□□□□ -2.2
SF3A1Q15459 Y_RNA.299-201ENST00000364973 94 ntBASIC1.3□□□□□ -2.2
SF3A1Q15459 RNU6-949P-201ENST00000384040 107 ntBASIC1.3□□□□□ -2.2
SF3A1Q15459 SNORD105-201ENST00000386910 85 ntBASIC1.3□□□□□ -2.2
SF3A1Q15459 MIR938-201ENST00000401216 83 ntBASIC1.3□□□□□ -2.2
SF3A1Q15459 MIR1263-201ENST00000408324 86 ntBASIC1.3□□□□□ -2.2
SF3A1Q15459 RNU7-35P-201ENST00000517174 62 ntBASIC1.3□□□□□ -2.2
SF3A1Q15459 IGKV1-22-201ENST00000524313 326 ntBASIC1.3□□□□□ -2.2
SF3A1Q15459 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.3□□□□□ -2.2
SF3A1Q15459 RNU6-704P-201ENST00000364162 103 ntBASIC1.29□□□□□ -2.2
SF3A1Q15459 RNY1P13-201ENST00000365030 105 ntBASIC1.29□□□□□ -2.2
SF3A1Q15459 MIR539-201ENST00000365690 78 ntBASIC1.29□□□□□ -2.2
SF3A1Q15459 MIR125B2-201ENST00000385128 89 ntBASIC1.29□□□□□ -2.2
SF3A1Q15459 RNU6-1061P-201ENST00000516530 99 ntBASIC1.29□□□□□ -2.2
SF3A1Q15459 MIR4804-201ENST00000581683 73 ntBASIC1.29□□□□□ -2.2
SF3A1Q15459 MIR96-201ENST00000362288 78 ntBASIC1.28□□□□□ -2.2
SF3A1Q15459 RNU1-36P-201ENST00000365130 165 ntBASIC1.28□□□□□ -2.2
SF3A1Q15459 MIR520H-201ENST00000385126 88 ntBASIC1.28□□□□□ -2.2
SF3A1Q15459 SNORD77B-201ENST00000391112 67 ntBASIC1.28□□□□□ -2.2
SF3A1Q15459 RNU1-119P-201ENST00000391122 165 ntBASIC1.28□□□□□ -2.2
SF3A1Q15459 RNU4-69P-201ENST00000410677 143 ntBASIC1.28□□□□□ -2.2
SF3A1Q15459 RNU6-403P-201ENST00000363163 104 ntBASIC1.27□□□□□ -2.21
SF3A1Q15459 Y_RNA.280-201ENST00000364765 112 ntBASIC1.27□□□□□ -2.21
SF3A1Q15459 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
SF3A1Q15459 U8.15-201ENST00000390947 134 ntBASIC1.27□□□□□ -2.21
SF3A1Q15459 Y_RNA.586-201ENST00000391146 98 ntBASIC1.27□□□□□ -2.21
SF3A1Q15459 SNORD99-201ENST00000408612 74 ntBASIC1.27□□□□□ -2.21
SF3A1Q15459 RNU4-83P-201ENST00000410863 133 ntBASIC1.27□□□□□ -2.21
SF3A1Q15459 RNU6-971P-201ENST00000516920 106 ntBASIC1.27□□□□□ -2.21
SF3A1Q15459 RNU7-156P-201ENST00000517214 74 ntBASIC1.27□□□□□ -2.21
SF3A1Q15459 MIR759-201ENST00000390224 91 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms