Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU6-369P-201ENST00000362515 102 ntBASIC0.91□□□□□ -2.26
HOXA1P49639 RNU6-934P-201ENST00000365154 107 ntBASIC0.91□□□□□ -2.26
HOXA1P49639 MIR539-201ENST00000365690 78 ntBASIC0.91□□□□□ -2.26
HOXA1P49639 Y_RNA.528-201ENST00000384575 108 ntBASIC0.91□□□□□ -2.26
HOXA1P49639 MIR19B1-201ENST00000384829 87 ntBASIC0.91□□□□□ -2.26
HOXA1P49639 MIR942-201ENST00000401111 86 ntBASIC0.91□□□□□ -2.26
HOXA1P49639 SNORD111-201ENST00000408139 94 ntBASIC0.91□□□□□ -2.26
HOXA1P49639 RNU6-1086P-201ENST00000410930 100 ntBASIC0.91□□□□□ -2.26
HOXA1P49639 RPL39P28-201ENST00000465655 155 ntBASIC0.91□□□□□ -2.26
HOXA1P49639 AC025166.1-201ENST00000612411 163 ntBASIC0.91□□□□□ -2.26
HOXA1P49639 AL365222.1-201ENST00000614661 98 ntBASIC0.91□□□□□ -2.26
HOXA1P49639 AL157834.3-201ENST00000615543 103 ntBASIC0.91□□□□□ -2.26
HOXA1P49639 AC023934.1-201ENST00000574529 2389 ntBASIC0.9□□□□□ -2.27
HOXA1P49639 RNU6-80P-201ENST00000384195 107 ntBASIC0.9□□□□□ -2.27
HOXA1P49639 RNU6-959P-201ENST00000384671 107 ntBASIC0.9□□□□□ -2.27
HOXA1P49639 SNORD89-201ENST00000390981 114 ntBASIC0.9□□□□□ -2.27
HOXA1P49639 BTF3P4-201ENST00000418852 495 ntBASIC0.9□□□□□ -2.27
HOXA1P49639 RNU6-893P-201ENST00000458841 100 ntBASIC0.9□□□□□ -2.27
HOXA1P49639 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.9□□□□□ -2.27
HOXA1P49639 AL359881.1-201ENST00000602916 267 ntBASIC0.9□□□□□ -2.27
HOXA1P49639 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.27
HOXA1P49639 AL391516.1-201ENST00000554380 2449 ntBASIC0.89□□□□□ -2.27
HOXA1P49639 SNORD115-2-201ENST00000362842 82 ntBASIC0.89□□□□□ -2.27
HOXA1P49639 RNY1P13-201ENST00000365030 105 ntBASIC0.89□□□□□ -2.27
HOXA1P49639 SNORD115-20-201ENST00000365099 82 ntBASIC0.89□□□□□ -2.27
HOXA1P49639 RNU6-81P-201ENST00000365608 104 ntBASIC0.89□□□□□ -2.27
HOXA1P49639 U8.15-201ENST00000390947 134 ntBASIC0.89□□□□□ -2.27
HOXA1P49639 SNORA17.3-201ENST00000391159 129 ntBASIC0.89□□□□□ -2.27
HOXA1P49639 RNU7-79P-201ENST00000516082 62 ntBASIC0.89□□□□□ -2.27
HOXA1P49639 RNU6-1333P-201ENST00000516162 93 ntBASIC0.89□□□□□ -2.27
HOXA1P49639 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.89□□□□□ -2.27
HOXA1P49639 AC105081.1-201ENST00000617727 106 ntBASIC0.89□□□□□ -2.27
HOXA1P49639 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
HOXA1P49639 MTND5P18-201ENST00000445624 1801 ntBASIC0.88□□□□□ -2.27
HOXA1P49639 AL157777.2-201ENST00000258070 137 ntBASIC0.88□□□□□ -2.27
HOXA1P49639 RNA5SP432-201ENST00000362480 116 ntBASIC0.88□□□□□ -2.27
HOXA1P49639 RNU1-124P-201ENST00000363861 145 ntBASIC0.88□□□□□ -2.27
HOXA1P49639 MIRLET7F2-201ENST00000385277 83 ntBASIC0.88□□□□□ -2.27
HOXA1P49639 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.88□□□□□ -2.27
HOXA1P49639 RNU6-659P-201ENST00000516454 104 ntBASIC0.88□□□□□ -2.27
HOXA1P49639 SNORD67.1-201ENST00000516618 108 ntBASIC0.88□□□□□ -2.27
HOXA1P49639 RNU7-6P-201ENST00000516845 62 ntBASIC0.88□□□□□ -2.27
HOXA1P49639 RNU7-35P-201ENST00000517174 62 ntBASIC0.88□□□□□ -2.27
HOXA1P49639 snoU13.31-201ENST00000607291 104 ntBASIC0.88□□□□□ -2.27
HOXA1P49639 AC132825.6-201ENST00000638861 357 ntBASIC0.88□□□□□ -2.27
HOXA1P49639 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
HOXA1P49639 SNORD116-14-201ENST00000383894 92 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 SNORD116-17-201ENST00000383929 92 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 RNU6-616P-201ENST00000384353 107 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 SNORD116-15-201ENST00000384445 92 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 SNORD116-19-201ENST00000384729 92 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 MIR100-201ENST00000385259 80 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 RNU4-69P-201ENST00000410677 143 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 AC096949.1-201ENST00000412047 152 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 RPS26P5-201ENST00000418544 335 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 RNU7-185P-201ENST00000459215 60 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 SNORD33.1-201ENST00000516213 88 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 MIR4676-201ENST00000583078 72 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 SNORA4-201ENST00000584302 138 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 Y_RNA.773-201ENST00000607168 90 ntBASIC0.87□□□□□ -2.27
HOXA1P49639 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.87□□□□□ -2.27
HOXA1P49639 SNORA19-201ENST00000384737 128 ntBASIC0.86□□□□□ -2.27
HOXA1P49639 RNU6-1307P-201ENST00000391012 103 ntBASIC0.86□□□□□ -2.27
HOXA1P49639 RPL39P25-201ENST00000449384 154 ntBASIC0.86□□□□□ -2.27
HOXA1P49639 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.86□□□□□ -2.27
HOXA1P49639 UBL5P1-201ENST00000507979 193 ntBASIC0.86□□□□□ -2.27
HOXA1P49639 AC108729.3-201ENST00000513484 108 ntBASIC0.86□□□□□ -2.27
HOXA1P49639 AC087741.2-201ENST00000619415 172 ntBASIC0.86□□□□□ -2.27
HOXA1P49639 Y_RNA.127-201ENST00000363386 109 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 Y_RNA.198-201ENST00000364013 98 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 RNU1-36P-201ENST00000365130 165 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 RNU6-949P-201ENST00000384040 107 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 MT-TF-201ENST00000387314 71 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 SNORD93-201ENST00000408813 74 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 RNA5SP136-201ENST00000410906 107 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 AL606753.1-201ENST00000427435 87 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 MIR18B-201ENST00000454574 71 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 AC087343.1-201ENST00000477341 475 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 MIR1255B1-201ENST00000636325 63 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 MIR3914-2-201ENST00000637339 95 ntBASIC0.85□□□□□ -2.27
HOXA1P49639 MIR1-1-201ENST00000362147 71 ntBASIC0.84□□□□□ -2.27
HOXA1P49639 SNORD114-24-201ENST00000365029 72 ntBASIC0.84□□□□□ -2.27
HOXA1P49639 Y_RNA.338-201ENST00000365320 114 ntBASIC0.84□□□□□ -2.27
HOXA1P49639 MIR520F-201ENST00000384824 87 ntBASIC0.84□□□□□ -2.27
HOXA1P49639 MIR1257-201ENST00000408490 117 ntBASIC0.84□□□□□ -2.27
HOXA1P49639 MIR1827-201ENST00000408549 66 ntBASIC0.84□□□□□ -2.27
HOXA1P49639 AC067940.1-201ENST00000458411 300 ntBASIC0.84□□□□□ -2.27
HOXA1P49639 COX6CP6-201ENST00000490840 228 ntBASIC0.84□□□□□ -2.27
HOXA1P49639 RNU6-977P-201ENST00000516411 103 ntBASIC0.84□□□□□ -2.27
HOXA1P49639 RNU7-137P-201ENST00000516788 62 ntBASIC0.84□□□□□ -2.27
HOXA1P49639 AC008608.1-201ENST00000603910 127 ntBASIC0.84□□□□□ -2.27
HOXA1P49639 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.84□□□□□ -2.27
HOXA1P49639 RNU6-403P-201ENST00000363163 104 ntBASIC0.83□□□□□ -2.28
HOXA1P49639 Y_RNA.213-201ENST00000364178 111 ntBASIC0.83□□□□□ -2.28
HOXA1P49639 Y_RNA.327-201ENST00000365201 102 ntBASIC0.83□□□□□ -2.28
HOXA1P49639 RNU6-22P-201ENST00000384355 107 ntBASIC0.83□□□□□ -2.28
HOXA1P49639 MIR200A-201ENST00000384875 90 ntBASIC0.83□□□□□ -2.28
HOXA1P49639 MIR548A1-201ENST00000385041 97 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 168.4 ms