Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 Y_RNA.274-201ENST00000364714 101 ntBASIC0.53□□□□□ -2.32
LHX1P48742 Y_RNA.337-201ENST00000365312 102 ntBASIC0.53□□□□□ -2.32
LHX1P48742 RNU4-83P-201ENST00000410863 133 ntBASIC0.53□□□□□ -2.32
LHX1P48742 AC141846.1-201ENST00000568348 142 ntBASIC0.53□□□□□ -2.32
LHX1P48742 Y_RNA.297-201ENST00000364950 91 ntBASIC0.52□□□□□ -2.33
LHX1P48742 SNORD100-201ENST00000408573 76 ntBASIC0.52□□□□□ -2.33
LHX1P48742 AC098934.3-201ENST00000430450 190 ntBASIC0.52□□□□□ -2.33
LHX1P48742 AC022559.1-201ENST00000520905 205 ntBASIC0.52□□□□□ -2.33
LHX1P48742 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.52□□□□□ -2.33
LHX1P48742 AC141273.2-201ENST00000618989 130 ntBASIC0.52□□□□□ -2.33
LHX1P48742 MIR7111-201ENST00000619751 72 ntBASIC0.52□□□□□ -2.33
LHX1P48742 RNU6-1082P-201ENST00000364574 107 ntBASIC0.51□□□□□ -2.33
LHX1P48742 RNU6-818P-201ENST00000364837 108 ntBASIC0.51□□□□□ -2.33
LHX1P48742 Y_RNA.357-201ENST00000365487 109 ntBASIC0.51□□□□□ -2.33
LHX1P48742 SNORA18-201ENST00000384416 132 ntBASIC0.51□□□□□ -2.33
LHX1P48742 AC114737.2-201ENST00000421583 173 ntBASIC0.51□□□□□ -2.33
LHX1P48742 Y_RNA.644-201ENST00000459006 113 ntBASIC0.51□□□□□ -2.33
LHX1P48742 AC002350.1-201ENST00000490759 375 ntBASIC0.51□□□□□ -2.33
LHX1P48742 Y_RNA.674-201ENST00000516362 113 ntBASIC0.51□□□□□ -2.33
LHX1P48742 RNU6-229P-201ENST00000516614 102 ntBASIC0.51□□□□□ -2.33
LHX1P48742 RNU6-448P-201ENST00000517052 107 ntBASIC0.51□□□□□ -2.33
LHX1P48742 MIR4711-201ENST00000578274 70 ntBASIC0.51□□□□□ -2.33
LHX1P48742 AC072026.1-201ENST00000605023 201 ntBASIC0.51□□□□□ -2.33
LHX1P48742 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.51□□□□□ -2.33
LHX1P48742 uc_338.17-201ENST00000619633 179 ntBASIC0.51□□□□□ -2.33
LHX1P48742 PVT1_3.1-201ENST00000620853 95 ntBASIC0.51□□□□□ -2.33
LHX1P48742 U8.15-201ENST00000390947 134 ntBASIC0.5□□□□□ -2.33
LHX1P48742 SNORA75.5-201ENST00000391291 81 ntBASIC0.5□□□□□ -2.33
LHX1P48742 RNU5E-9P-201ENST00000411164 104 ntBASIC0.5□□□□□ -2.33
LHX1P48742 Y_RNA.793-201ENST00000411222 111 ntBASIC0.5□□□□□ -2.33
LHX1P48742 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.5□□□□□ -2.33
LHX1P48742 Y_RNA.757-201ENST00000578934 114 ntBASIC0.5□□□□□ -2.33
LHX1P48742 AC243829.3-201ENST00000622177 108 ntBASIC0.5□□□□□ -2.33
LHX1P48742 RNU6-403P-201ENST00000363163 104 ntBASIC0.49□□□□□ -2.33
LHX1P48742 RNU6-379P-201ENST00000363813 104 ntBASIC0.49□□□□□ -2.33
LHX1P48742 RNA5SP117-201ENST00000365294 118 ntBASIC0.49□□□□□ -2.33
LHX1P48742 RNU6-949P-201ENST00000384040 107 ntBASIC0.49□□□□□ -2.33
LHX1P48742 RNU6-342P-201ENST00000384521 104 ntBASIC0.49□□□□□ -2.33
LHX1P48742 AL157398.1-201ENST00000452981 186 ntBASIC0.49□□□□□ -2.33
LHX1P48742 MIR8066-201ENST00000617280 78 ntBASIC0.49□□□□□ -2.33
LHX1P48742 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.49□□□□□ -2.33
LHX1P48742 MIR5087-201ENST00000635826 76 ntBASIC0.49□□□□□ -2.33
LHX1P48742 MIR6844-201ENST00000637122 62 ntBASIC0.49□□□□□ -2.33
LHX1P48742 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
LHX1P48742 RNU6-349P-201ENST00000362402 107 ntBASIC0.48□□□□□ -2.33
LHX1P48742 Y_RNA.42-201ENST00000362660 108 ntBASIC0.48□□□□□ -2.33
LHX1P48742 Y_RNA.171-201ENST00000363760 102 ntBASIC0.48□□□□□ -2.33
LHX1P48742 Y_RNA.552-201ENST00000384665 112 ntBASIC0.48□□□□□ -2.33
LHX1P48742 RNA5SP193-201ENST00000410353 107 ntBASIC0.48□□□□□ -2.33
LHX1P48742 RNA5SP144-201ENST00000410846 116 ntBASIC0.48□□□□□ -2.33
LHX1P48742 AL022718.1-201ENST00000412004 84 ntBASIC0.48□□□□□ -2.33
LHX1P48742 RNA5SP236-201ENST00000516169 116 ntBASIC0.48□□□□□ -2.33
LHX1P48742 RN7SKP12-201ENST00000516275 143 ntBASIC0.48□□□□□ -2.33
LHX1P48742 RNU6-1258P-201ENST00000516911 111 ntBASIC0.48□□□□□ -2.33
LHX1P48742 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.48□□□□□ -2.33
LHX1P48742 AP002392.1-201ENST00000537692 208 ntBASIC0.48□□□□□ -2.33
LHX1P48742 AC078938.1-201ENST00000620993 318 ntBASIC0.48□□□□□ -2.33
LHX1P48742 RNU6-690P-201ENST00000365242 106 ntBASIC0.47□□□□□ -2.33
LHX1P48742 Y_RNA.476-201ENST00000384347 108 ntBASIC0.47□□□□□ -2.33
LHX1P48742 MT-TG-201ENST00000387429 68 ntBASIC0.47□□□□□ -2.33
LHX1P48742 RNU6-239P-201ENST00000390990 99 ntBASIC0.47□□□□□ -2.33
LHX1P48742 RNU6-679P-201ENST00000391003 106 ntBASIC0.47□□□□□ -2.33
LHX1P48742 MTATP6P21-201ENST00000440681 189 ntBASIC0.47□□□□□ -2.33
LHX1P48742 RNU7-113P-201ENST00000459273 62 ntBASIC0.47□□□□□ -2.33
LHX1P48742 MIR3646-201ENST00000578301 84 ntBASIC0.47□□□□□ -2.33
LHX1P48742 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.47□□□□□ -2.33
LHX1P48742 Y_RNA.13-201ENST00000362403 112 ntBASIC0.46□□□□□ -2.34
LHX1P48742 RNY1P13-201ENST00000365030 105 ntBASIC0.46□□□□□ -2.34
LHX1P48742 RNU6-588P-201ENST00000410281 105 ntBASIC0.46□□□□□ -2.34
LHX1P48742 RNU6-1086P-201ENST00000410930 100 ntBASIC0.46□□□□□ -2.34
LHX1P48742 RNU6-388P-201ENST00000517012 105 ntBASIC0.46□□□□□ -2.34
LHX1P48742 RNU6-389P-201ENST00000517048 105 ntBASIC0.46□□□□□ -2.34
LHX1P48742 MIR6082-201ENST00000613604 109 ntBASIC0.46□□□□□ -2.34
LHX1P48742 AC092634.7-201ENST00000621022 103 ntBASIC0.46□□□□□ -2.34
LHX1P48742 AL589743.1-201ENST00000551932 2712 ntBASIC0.45□□□□□ -2.34
LHX1P48742 RNU4-84P-201ENST00000364200 139 ntBASIC0.45□□□□□ -2.34
LHX1P48742 RNU6-200P-201ENST00000364743 107 ntBASIC0.45□□□□□ -2.34
LHX1P48742 SNORA72.6-201ENST00000384520 129 ntBASIC0.45□□□□□ -2.34
LHX1P48742 MIR613-201ENST00000385248 95 ntBASIC0.45□□□□□ -2.34
LHX1P48742 SNORD37.2-201ENST00000391075 66 ntBASIC0.45□□□□□ -2.34
LHX1P48742 Y_RNA.588-201ENST00000391254 102 ntBASIC0.45□□□□□ -2.34
LHX1P48742 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.45□□□□□ -2.34
LHX1P48742 AP003327.1-201ENST00000529684 127 ntBASIC0.45□□□□□ -2.34
LHX1P48742 MIR4491-201ENST00000581087 68 ntBASIC0.45□□□□□ -2.34
LHX1P48742 AC011603.4-201ENST00000611325 277 ntBASIC0.45□□□□□ -2.34
LHX1P48742 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.45□□□□□ -2.34
LHX1P48742 Y_RNA.497-201ENST00000384447 98 ntBASIC0.44□□□□□ -2.34
LHX1P48742 MIR216A-201ENST00000385063 110 ntBASIC0.44□□□□□ -2.34
LHX1P48742 Y_RNA.617-201ENST00000410920 90 ntBASIC0.44□□□□□ -2.34
LHX1P48742 RNU7-79P-201ENST00000516082 62 ntBASIC0.44□□□□□ -2.34
LHX1P48742 RNA5SP33-201ENST00000516687 98 ntBASIC0.44□□□□□ -2.34
LHX1P48742 RNU6-765P-201ENST00000516916 99 ntBASIC0.44□□□□□ -2.34
LHX1P48742 MIR3678-201ENST00000578455 94 ntBASIC0.44□□□□□ -2.34
LHX1P48742 AC243829.6-201ENST00000612652 106 ntBASIC0.44□□□□□ -2.34
LHX1P48742 Y_RNA.240-201ENST00000364469 95 ntBASIC0.43□□□□□ -2.34
LHX1P48742 Y_RNA.470-201ENST00000384307 117 ntBASIC0.43□□□□□ -2.34
LHX1P48742 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.43□□□□□ -2.34
LHX1P48742 RNU6-138P-201ENST00000515952 107 ntBASIC0.43□□□□□ -2.34
LHX1P48742 RNU6-469P-201ENST00000516253 101 ntBASIC0.43□□□□□ -2.34
LHX1P48742 RNA5SP94-201ENST00000516917 108 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms