Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MIR4752-201ENST00000579672 72 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 MIR4305-201ENST00000583252 102 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 MIR4282-201ENST00000583613 67 ntBASIC-0.05□□□□□ -2.42
RFX3P48380 Y_RNA.202-201ENST00000364083 110 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 SNORA72.6-201ENST00000384520 129 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 RNU6-291P-201ENST00000384720 107 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 MIR610-201ENST00000385139 96 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 Y_RNA.590-201ENST00000410140 107 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 RNU6-985P-201ENST00000410182 104 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 SNORD116-25-201ENST00000516517 92 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 RNU6-570P-201ENST00000517051 105 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 AP003072.1-201ENST00000531740 145 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 MIR3171-201ENST00000584270 74 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 MIR4743-201ENST00000584576 69 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 AL365265.1-201ENST00000621045 234 ntBASIC-0.06□□□□□ -2.42
RFX3P48380 RNU4-17P-201ENST00000365598 141 ntBASIC-0.07□□□□□ -2.42
RFX3P48380 SNORA2A-201ENST00000383885 135 ntBASIC-0.07□□□□□ -2.42
RFX3P48380 SNORA18-201ENST00000384416 132 ntBASIC-0.07□□□□□ -2.42
RFX3P48380 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
RFX3P48380 Y_RNA.679-201ENST00000516416 91 ntBASIC-0.07□□□□□ -2.42
RFX3P48380 MTND5P34-201ENST00000568888 325 ntBASIC-0.07□□□□□ -2.42
RFX3P48380 MIR4290-201ENST00000583807 95 ntBASIC-0.07□□□□□ -2.42
RFX3P48380 Y_RNA.138-201ENST00000363462 102 ntBASIC-0.08□□□□□ -2.42
RFX3P48380 Y_RNA.237-201ENST00000364439 102 ntBASIC-0.08□□□□□ -2.42
RFX3P48380 RNY1P13-201ENST00000365030 105 ntBASIC-0.08□□□□□ -2.42
RFX3P48380 Y_RNA.535-201ENST00000384612 99 ntBASIC-0.08□□□□□ -2.42
RFX3P48380 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-0.08□□□□□ -2.42
RFX3P48380 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-0.08□□□□□ -2.42
RFX3P48380 AC020661.2-201ENST00000560114 134 ntBASIC-0.08□□□□□ -2.42
RFX3P48380 U6.104-201ENST00000637979 90 ntBASIC-0.08□□□□□ -2.42
RFX3P48380 RNU6-713P-201ENST00000384761 107 ntBASIC-0.09□□□□□ -2.42
RFX3P48380 MIR593-201ENST00000384856 100 ntBASIC-0.09□□□□□ -2.42
RFX3P48380 MIRLET7F2-201ENST00000385277 83 ntBASIC-0.09□□□□□ -2.42
RFX3P48380 MIR760-201ENST00000390220 80 ntBASIC-0.09□□□□□ -2.42
RFX3P48380 MIR892B-201ENST00000401279 77 ntBASIC-0.09□□□□□ -2.42
RFX3P48380 MIR548H2-201ENST00000408874 88 ntBASIC-0.09□□□□□ -2.42
RFX3P48380 MTND4LP11-201ENST00000422184 280 ntBASIC-0.09□□□□□ -2.42
RFX3P48380 AP001094.1-201ENST00000579805 193 ntBASIC-0.09□□□□□ -2.42
RFX3P48380 RNU1-29P-201ENST00000606574 126 ntBASIC-0.09□□□□□ -2.42
RFX3P48380 AC244669.1-204ENST00000621564 178 ntBASIC-0.09□□□□□ -2.42
RFX3P48380 Y_RNA.61-201ENST00000362835 102 ntBASIC-0.1□□□□□ -2.43
RFX3P48380 Y_RNA.262-201ENST00000364641 102 ntBASIC-0.1□□□□□ -2.43
RFX3P48380 MIR624-201ENST00000385217 97 ntBASIC-0.1□□□□□ -2.43
RFX3P48380 RNU6-1109P-201ENST00000391187 107 ntBASIC-0.1□□□□□ -2.43
RFX3P48380 RNU6-651P-201ENST00000411040 105 ntBASIC-0.1□□□□□ -2.43
RFX3P48380 RNU6-561P-201ENST00000516222 102 ntBASIC-0.1□□□□□ -2.43
RFX3P48380 MIR378D2-201ENST00000580636 98 ntBASIC-0.1□□□□□ -2.43
RFX3P48380 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.1□□□□□ -2.43
RFX3P48380 MIR499B-201ENST00000636498 73 ntBASIC-0.1□□□□□ -2.43
RFX3P48380 RNU4-58P-201ENST00000363192 141 ntBASIC-0.11□□□□□ -2.43
RFX3P48380 RNA5SP128-201ENST00000365305 116 ntBASIC-0.11□□□□□ -2.43
RFX3P48380 RNU4-70P-201ENST00000384579 139 ntBASIC-0.11□□□□□ -2.43
RFX3P48380 MIR145-201ENST00000384967 88 ntBASIC-0.11□□□□□ -2.43
RFX3P48380 SNORA25.16-201ENST00000516741 121 ntBASIC-0.11□□□□□ -2.43
RFX3P48380 SCARNA15-202ENST00000516881 127 ntBASIC-0.11□□□□□ -2.43
RFX3P48380 RNU6-1137P-201ENST00000517073 99 ntBASIC-0.11□□□□□ -2.43
RFX3P48380 AL442663.2-201ENST00000554385 511 ntBASIC-0.11□□□□□ -2.43
RFX3P48380 MIR4744-201ENST00000581563 82 ntBASIC-0.11□□□□□ -2.43
RFX3P48380 Y_RNA.216-201ENST00000364205 93 ntBASIC-0.12□□□□□ -2.43
RFX3P48380 RNU6-978P-201ENST00000364371 103 ntBASIC-0.12□□□□□ -2.43
RFX3P48380 SNORA33.2-201ENST00000365413 134 ntBASIC-0.12□□□□□ -2.43
RFX3P48380 RNU6-639P-201ENST00000384074 107 ntBASIC-0.12□□□□□ -2.43
RFX3P48380 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.12□□□□□ -2.43
RFX3P48380 AC108059.2-201ENST00000434626 151 ntBASIC-0.12□□□□□ -2.43
RFX3P48380 RNU7-79P-201ENST00000516082 62 ntBASIC-0.12□□□□□ -2.43
RFX3P48380 RNA5SP395-201ENST00000516567 118 ntBASIC-0.12□□□□□ -2.43
RFX3P48380 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.12□□□□□ -2.43
RFX3P48380 MIR6759-201ENST00000638110 65 ntBASIC-0.12□□□□□ -2.43
RFX3P48380 RNA5SP245-201ENST00000364239 121 ntBASIC-0.13□□□□□ -2.43
RFX3P48380 RNU6-923P-201ENST00000364753 107 ntBASIC-0.13□□□□□ -2.43
RFX3P48380 RNU6-756P-201ENST00000383997 107 ntBASIC-0.13□□□□□ -2.43
RFX3P48380 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.13□□□□□ -2.43
RFX3P48380 RNU6-929P-201ENST00000384429 107 ntBASIC-0.13□□□□□ -2.43
RFX3P48380 AL121914.1-201ENST00000450188 156 ntBASIC-0.13□□□□□ -2.43
RFX3P48380 AL117351.2-201ENST00000513571 157 ntBASIC-0.13□□□□□ -2.43
RFX3P48380 RNU7-35P-201ENST00000517174 62 ntBASIC-0.13□□□□□ -2.43
RFX3P48380 DEFB131E-201ENST00000532329 154 ntBASIC-0.13□□□□□ -2.43
RFX3P48380 AL442067.1-201ENST00000613261 223 ntBASIC-0.13□□□□□ -2.43
RFX3P48380 MIR1295B-201ENST00000636144 60 ntBASIC-0.13□□□□□ -2.43
RFX3P48380 SNORA63.5-201ENST00000363548 123 ntBASIC-0.14□□□□□ -2.43
RFX3P48380 RNY1P6-201ENST00000384193 109 ntBASIC-0.14□□□□□ -2.43
RFX3P48380 RNU6-1149P-201ENST00000516810 97 ntBASIC-0.14□□□□□ -2.43
RFX3P48380 RNU6-782P-201ENST00000516852 104 ntBASIC-0.14□□□□□ -2.43
RFX3P48380 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.14□□□□□ -2.43
RFX3P48380 Y_RNA.518-201ENST00000384552 113 ntBASIC-0.15□□□□□ -2.43
RFX3P48380 MIR1302-6-201ENST00000408466 90 ntBASIC-0.15□□□□□ -2.43
RFX3P48380 RPL39P34-201ENST00000477141 156 ntBASIC-0.15□□□□□ -2.43
RFX3P48380 AL356055.1-201ENST00000602528 446 ntBASIC-0.15□□□□□ -2.43
RFX3P48380 AL360085.1-201ENST00000604713 532 ntBASIC-0.15□□□□□ -2.43
RFX3P48380 MIR101-2-201ENST00000362195 79 ntBASIC-0.16□□□□□ -2.44
RFX3P48380 Y_RNA.56-201ENST00000362798 112 ntBASIC-0.16□□□□□ -2.44
RFX3P48380 SNORD115-2-201ENST00000362842 82 ntBASIC-0.16□□□□□ -2.44
RFX3P48380 RNU4-16P-201ENST00000364737 141 ntBASIC-0.16□□□□□ -2.44
RFX3P48380 SNORD115-20-201ENST00000365099 82 ntBASIC-0.16□□□□□ -2.44
RFX3P48380 RNU6-302P-201ENST00000365249 107 ntBASIC-0.16□□□□□ -2.44
RFX3P48380 Y_RNA.352-201ENST00000365439 102 ntBASIC-0.16□□□□□ -2.44
RFX3P48380 RNU6V-201ENST00000384105 107 ntBASIC-0.16□□□□□ -2.44
RFX3P48380 RNU6-578P-201ENST00000390980 103 ntBASIC-0.16□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms