Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RNU6-1100P-201ENST00000410691 104 ntBASIC0.44□□□□□ -2.34
PTPN4P29074 RNU6-860P-201ENST00000410860 104 ntBASIC0.44□□□□□ -2.34
PTPN4P29074 RNU6-1217P-201ENST00000411276 104 ntBASIC0.44□□□□□ -2.34
PTPN4P29074 RNU6-785P-201ENST00000411324 104 ntBASIC0.44□□□□□ -2.34
PTPN4P29074 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.44□□□□□ -2.34
PTPN4P29074 U6.90-201ENST00000614007 104 ntBASIC0.44□□□□□ -2.34
PTPN4P29074 U6.70-201ENST00000620287 104 ntBASIC0.44□□□□□ -2.34
PTPN4P29074 SNORA22.1-201ENST00000362701 134 ntBASIC0.43□□□□□ -2.34
PTPN4P29074 SNORD18A-201ENST00000363753 72 ntBASIC0.43□□□□□ -2.34
PTPN4P29074 RNU6-47P-201ENST00000383866 107 ntBASIC0.43□□□□□ -2.34
PTPN4P29074 SNORD100-201ENST00000408573 76 ntBASIC0.43□□□□□ -2.34
PTPN4P29074 RNA5SP237-201ENST00000410414 113 ntBASIC0.43□□□□□ -2.34
PTPN4P29074 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.43□□□□□ -2.34
PTPN4P29074 MTND5P32-201ENST00000560711 1802 ntBASIC0.43□□□□□ -2.34
PTPN4P29074 Y_RNA.83-201ENST00000363005 113 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 Y_RNA.144-201ENST00000363521 113 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 RNA5SP457-201ENST00000363657 124 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 RNU6-1336P-201ENST00000383886 109 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.42□□□□□ -2.34
PTPN4P29074 MIR4431-201ENST00000579990 94 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 AC009779.6-201ENST00000603972 165 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 AC090625.1-201ENST00000357130 210 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 RNU6-1020P-201ENST00000363684 107 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 RNU4-16P-201ENST00000364737 141 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 VTRNA1-3-201ENST00000365645 89 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 Y_RNA.521-201ENST00000384560 114 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 SNORD93-201ENST00000408813 74 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 AC002350.1-201ENST00000490759 375 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 AC141846.1-201ENST00000568348 142 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 AL162730.1-201ENST00000605734 292 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 MIR8066-201ENST00000617280 78 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 Y_RNA.42-201ENST00000362660 108 ntBASIC0.4□□□□□ -2.35
PTPN4P29074 Y_RNA.52-201ENST00000362760 96 ntBASIC0.4□□□□□ -2.35
PTPN4P29074 RNU4-83P-201ENST00000410863 133 ntBASIC0.4□□□□□ -2.35
PTPN4P29074 AC130289.1-201ENST00000577321 73 ntBASIC0.4□□□□□ -2.35
PTPN4P29074 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.4□□□□□ -2.35
PTPN4P29074 uc_338.16-201ENST00000621804 95 ntBASIC0.4□□□□□ -2.35
PTPN4P29074 MIR330-201ENST00000362196 94 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RNY1P6-201ENST00000384193 109 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 Y_RNA.515-201ENST00000384535 112 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RNU6-768P-201ENST00000384683 107 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 U8.15-201ENST00000390947 134 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RPL39P25-201ENST00000449384 154 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RNU6-893P-201ENST00000458841 100 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RNU6-1258P-201ENST00000516911 111 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RNU6-448P-201ENST00000517052 107 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 Y_RNA.757-201ENST00000578934 114 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RNU6-1082P-201ENST00000364574 107 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 RNU6-312P-201ENST00000364629 107 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 RNU6-949P-201ENST00000384040 107 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 SNORA18-201ENST00000384416 132 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 AC096949.1-201ENST00000412047 152 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 AC107027.2-201ENST00000512197 115 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 RNU6-1219P-201ENST00000516143 112 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 RNA5SP236-201ENST00000516169 116 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 RNA5SP330-201ENST00000517096 96 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 MIR8087-201ENST00000612745 78 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 RNU6-349P-201ENST00000362402 107 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.85-201ENST00000363014 111 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.171-201ENST00000363760 102 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.233-201ENST00000364407 101 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.258-201ENST00000364613 105 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.274-201ENST00000364714 101 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.489-201ENST00000384410 101 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.588-201ENST00000391254 102 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 AL078595.1-201ENST00000404458 226 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 RNA5SP144-201ENST00000410846 116 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 SNORA68.3-201ENST00000515906 83 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 AC022559.1-201ENST00000520905 205 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.13-201ENST00000362403 112 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 RNY1P13-201ENST00000365030 105 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 RNA5SP117-201ENST00000365294 118 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 RNU6-679P-201ENST00000391003 106 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 Y_RNA.617-201ENST00000410920 90 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 RNU5E-9P-201ENST00000411164 104 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 SNORD71-201ENST00000411292 86 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.36□□□□□ -2.35
PTPN4P29074 RNA5SP94-201ENST00000516917 108 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 AP003327.1-201ENST00000529684 127 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 AC092634.7-201ENST00000621022 103 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
PTPN4P29074 RNU6-403P-201ENST00000363163 104 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 Y_RNA.115-201ENST00000363272 98 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 RNA5SP517-201ENST00000364724 117 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 Y_RNA.337-201ENST00000365312 102 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 RNU6-1086P-201ENST00000410930 100 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 MIR3678-201ENST00000578455 94 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 MIR4491-201ENST00000581087 68 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 MIR6082-201ENST00000613604 109 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.35□□□□□ -2.35
PTPN4P29074 RNU6-818P-201ENST00000364837 108 ntBASIC0.34□□□□□ -2.36
PTPN4P29074 SNORA75.5-201ENST00000391291 81 ntBASIC0.34□□□□□ -2.36
PTPN4P29074 Y_RNA.644-201ENST00000459006 113 ntBASIC0.34□□□□□ -2.36
PTPN4P29074 Y_RNA.674-201ENST00000516362 113 ntBASIC0.34□□□□□ -2.36
PTPN4P29074 RNU6-765P-201ENST00000516916 99 ntBASIC0.34□□□□□ -2.36
PTPN4P29074 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 169 ms